Trem compositions and uses thereof

ABSTRACT

The invention relates generally to tRNA-based effector molecules having a non-naturally occurring modification and methods relating thereto.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a continuation of International Application No. PCT/US2021/027357, filed Apr. 14, 2021, which claims priority to U.S. Provisional Application No. 63/009,669, filed on Apr. 14, 2020, the entire contents of which is hereby incorporated by reference.

SEQUENCE LISTING

The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on May 25, 2021, is named F2099-7004WO(VL63009-W1)_SL.txt and is 435,100 bytes in size.

BACKGROUND

Transfer RNAs (tRNAs) are complex, naturally occurring RNA molecules that possess a number of functions including initiation and elongation of proteins.

SUMMARY

The present disclosure features modified tRNA-based effector molecules (TREMs, e.g., a TREM or TREM fragment), as well as related compositions and uses thereof. As provided herein, TREMs are complex molecules which can mediate a variety of cellular processes. The TREMs disclosed herein comprise at least one modification (e.g., a non-naturally occurring modification), e.g., on a component nucleotide (e.g., a nucleobase or sugar) or within an internucleotide region, e.g., the TREM backbone. In one aspect, provided herein is a TREM comprising a sequence of Formula A: [L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2], wherein independently, [L1] and [VL Domain], are optional; and one of [L1], [ASt Domain1], [L2]-[DH Domain], [L3], [ACH Domain], [VL Domain], [TH Domain], [L4], and [ASt Domain2] comprises a nucleotide comprising a non-naturally occurring modification.

In an embodiment, the TREM: (a) has the ability to: (i) support protein synthesis, (ii) be charged by a synthetase, (iii) be bound by an elongation factor, (iv) introduce an amino acid into a peptide chain, (v) support elongation, or (vi) support initiation; (b) comprises at least X contiguous nucleotides without a non-naturally occurring modification, wherein X is greater than 3, 4, 5, 6, 7, 8, 9, or 10; (c) comprises at least 3, but less than all of the nucleotides of a type (e.g., A, T, C, G or U) comprise the same non-naturally occurring modification; (d) comprises at least X nucleotides of a type (e.g., A, T, C, G or U) that do not comprise a non-naturally occurring modification, wherein X=1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 or 50; (e) comprises no more than 5, 10, or 15 nucleotides of a type (e.g., A, T, C, G or U) that comprise a non-naturally occurring modification; and/or (f) comprises no more than 5, 10, or 15 nucleotides of a type (e.g., A, T, C, G or U) that do not comprise a non-naturally occurring modification.

In an embodiment, the TREM comprises feature (a)(i). In an embodiment, the TREM comprises feature (a)(ii). In an embodiment, the TREM comprises feature (a)(iii). In an embodiment, the TREM comprises feature (a)(iv). In an embodiment, the TREM comprises feature (a)(v). In an embodiment, the TREM comprises feature (a)(vi). In an embodiment, the TREM comprises feature (b). In an embodiment, the TREM comprises feature (c). In an embodiment, the TREM comprises feature (d). In an embodiment, the TREM comprises feature (e). In an embodiment, the TREM comprises feature (f). In an embodiment, the TREM comprises all of features (a)-(f) or a combination thereof.

In an embodiment, the TREM Domain comprising the non-naturally occurring modification has a function, e.g., a domain function described herein.

In an aspect, provided herein is a TREM core fragment comprising a sequence of Formula B:

[L1]_(y)-[ASt Domain1]_(x)-[L2]_(y)-[DH Domain]_(y)-[L3]_(y)-[ACH Domain]_(x)-[VL Domain]_(y)-[TH Domain]_(y)-[L4]_(y)-[ASt Domain2]_(x),

wherein x=1 and y=0 or 1; and one of [ASt Domain1], [ACH Domain], and [ASt Domain2] comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, the TREM has the ability to support protein synthesis. In an embodiment, the TREM has the ability to be able to be charged by a synthetase. In an embodiment, the TREM has the ability to be bound by an elongation factor. In an embodiment, the TREM has the ability to introduce an amino acid into a peptide chain. In an embodiment, the TREM has the ability to support elongation. In an embodiment, the TREM has the ability to support initiation.

In an embodiment, the [ASt Domain 1] and/or [ASt Domain 2] comprising the non-naturally occurring modification has the ability to initiate or elongate a polypeptide chain.

In an embodiment, the [ACH Domain] comprising the non-naturally occurring modification has the ability to mediate pairing with a codon.

In an embodiment, y=1 for any one, two, three, four, five, six, all or a combination of [L1], [L2], [DH Domain], [L3], [VL Domain], [TH Domain], [L4].

In an embodiment, y=0 for any one, two, three, four, five, six, all or a combination of [L1], [L2], [DH Domain], [L3], [VL Domain], [TH Domain], [L4].

In an embodiment, y=1 for linker [L1], and L1 comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, y=1 for linker [L2], and L2 comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, y=1 for [DH Domain (DHD)], and DHD comprises a nucleotide having a non-naturally occurring modification. In an embodiment, the DHD comprising the non-naturally occurring modification has the ability to mediate recognition of aminoacyl-tRNA synthetase.

In an embodiment, y=1 for linker [L3], and L3 comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, y=1 for [VL Domain (VLD)], and VLD comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, y=1 for [TH Domain (THD)], and THD comprises a nucleotide having a non-naturally occurring modification. In an embodiment, the THD comprising the non-naturally occurring modification has the ability to mediate recognition of the ribosome.

In an embodiment, y=1 for linker [L4], and L4 comprises a nucleotide having a non-naturally occurring modification.

In another aspect, the disclosure provides a TREM fragment comprising a portion of a TREM, wherein the TREM comprises a sequence of Formula A:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2],

and wherein the TREM fragment comprises a non-naturally occurring modification.

In an embodiment, the TREM fragment comprises one, two, three or all or any combination of the following: (a) a TREM half (e.g., from a cleavage in the ACH Domain, e.g., in the anticodon sequence, e.g., a 5′ half or a 3′ half); (b) a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g., from a cleavage in a DH Domain or the ACH Domain); (c) a 3′ fragment (e.g., a fragment comprising the 3′ end, e.g., from a cleavage in the TH Domain); or (d) an internal fragment (e.g., from a cleavage in any one of the ACH Domain, DH Domain or TH Domain).

In an embodiment, the TREM fragment comprise (a) a TREM half which comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, the TREM fragment comprise (b) a 5′ fragment which comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, the TREM fragment comprise (c) a 3′ fragment which comprises a nucleotide having a non-naturally occurring modification.

In an embodiment, the TREM fragment comprise (d) an internal fragment which comprises a nucleotide having a non-naturally occurring modification.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the TREM Domain comprises a plurality of nucleotides each having a non-naturally occurring modification. In an embodiment, the non-naturally occurring modification comprises a nucleobase modification, a sugar (e.g., ribose) modification, or a backbone modification. In an embodiment, tbe non-naturally occurring modification is a sugar (e.g., ribose) modification. In an embodiment, tbe non-naturally occurring modification is 2′-ribose modification, e.g., a 2′-OMe, 2′-halo (e.g., 2′-F), 2′-MOE, or 2′-deoxy modification. In an embodiment, tbe non-naturally occurring modification is a backbone modification, e.g., a phosphorothioate modification.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the TREM sequence comprises a CCA sequence on a terminus, e.g., the 3′ terminus. In an embodiment, the TREM sequence does not comprise a CCA sequence on a terminus, e.g., the 3′ terminus.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a modification in a base or a backbone of a nucleotide, e.g., a modification chosen from any one of Tables 5, 6, 7, 8 or 9.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a base modification chosen from a modification listed in Table 5.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a base modification chosen from a modification listed in Table 6.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a base modification chosen from a modification listed in Table 7.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a backbone modification chosen from a modification listed in Table 8.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the non-naturally occurring modification is a backbone modification chosen from a modification listed in Table 9.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 1, e.g., any one of SEQ ID NOs 1-451.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the TREM, TREM core fragment, or TREM fragment is encoded by a consensus sequence chosen from any one of SEQ ID NOs: 562-621.

In an embodiment of any of the TREMs, TREM core fragments, or TREM fragments disclosed herein, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in any one of Tables 15-22, e.g., any one of SEQ ID NOs: 622-1187. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 15, e.g., any one of SEQ ID NOs: 622-698. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 16, e.g., any one of SEQ ID NOs: 699-774. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 17, e.g., any one of SEQ ID NOs: 775-841. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 18, e.g., any one of SEQ ID NOs: 842-917. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 19, e.g., any one of SEQ ID NOs: 918-992. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 20, e.g., any one of SEQ ID NOs: 993-1078. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 21, e.g., any one of SEQ ID NOs: 1079-1154. In an embodiment, the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 22, e.g., any one of SEQ ID NOs: 1155-1187.

In another aspect, the disclosure provides a pharmaceutical composition comprising a TREM, a TREM core fragment, or a TREM fragment disclosed herein.

In another aspect, the disclosure provides a method of making a TREM, a TREM core fragment, or a TREM fragment disclosed herein, comprising linking a first nucleotide to a second nucleotide to form the TREM.

In an embodiment, the TREM, TREM core fragment or TREM fragment is non-naturally occurring (e.g., synthetic).

In an embodiment, the TREM, TREM core fragment or TREM fragment is made by cell-free solid phase synthesis.

In another aspect, the disclosure provides a method of modulating a tRNA pool in a cell comprising: providing a TREM, a TREM core fragment, or a TREM fragment disclosed herein, and contacting the cell with the TREM, TREM core fragment or TREM fragment, thereby modulating the tRNA pool in the cell.

In an aspect, the disclosure provides a method of contacting a cell, tissue, or subject with a TREM, a TREM core fragment, or a TREM fragment disclosed herein, comprising: contacting the cell, tissue or subject with the TREM, TREM core fragment or TREM fragment, thereby contacting the cell, tissue, or subject with the TREM, TREM core fragment or TREM fragment.

In another aspect, the disclosure provides a method of delivering a TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject, comprising: providing a cell, tissue, or subject, and contacting the cell, tissue, or subject, a TREM, a TREM core fragment, or a TREM fragment disclosed herein.

In an aspect, the disclosure provides a method of modulating a tRNA pool in a cell comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the cell, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the cell;

contacting the cell with a TREM, a TREM core fragment, or a TREM fragment disclosed herein, wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the cell,

thereby modulating the tRNA pool in the cell.

In another aspect, the disclosure provides a method of modulating a tRNA pool in a subject having an ORF, which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the subject, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the subject;

contacting the subject with a TREM, a TREM core fragment, or a TREM fragment disclosed herein, wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the subject,

thereby modulating the tRNA pool in the subject.

In an aspect, the disclosure provides a method of modulating a tRNA pool in a subject having an endogenous ORF comprising a codon comprising a synonymous mutation (a synonymous mutation codon or SMC), comprising:

providing a composition comprising a TREM, a TREM core fragment, or a TREM fragment disclosed herein, wherein the TREM, TREM core fragment or TREM fragment comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the subject with the composition in an amount and/or for a time sufficient to modulate the tRNA pool in the subject,

thereby modulating the tRNA pool in the subject.

In another aspect, the disclosure provides a method of modulating a tRNA pool in a cell comprising an endogenous ORF comprising a codon comprising a SMC, comprising:

providing a composition comprising a TREM, a TREM core fragment, or a TREM fragment disclosed herein, wherein the TREM, TREM core fragment or TREM fragment comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the cell with the composition comprising a TREM in an amount and/or for a time sufficient to modulate the tRNA pool in the cell,

thereby modulating the tRNA pool in the cell.

In an aspect, the disclosure provides a method of modulating expression of a protein in a cell, wherein the protein is encoded by a nucleic acid comprising an ORF, which ORF comprises a codon having a mutation, comprising:

contacting the cell with a composition comprising a TREM, a TREM core fragment, or a TREM fragment disclosed herein in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the cell.

In another aspect, the disclosure provides a method of modulating expression of a protein in a subject, wherein the protein is encoded by a nucleic acid comprising an endogenous ORF, which ORF comprises a codon having a mutation, comprising:

contacting the subject with a composition comprising a TREM, a TREM core fragment, or a TREM fragment disclosed herein, in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the subject.

In an embodiment of any of the methods disclosed herein, the mutation in the ORF is a nonsense mutation, e.g., resulting in a premature stop codon chosen from UAA, UGA or UAG.

In an embodiment, the stop codon is UAA. In an embodiment, the stop codon is UGA. In an embodiment, the stop codon is UAG.

In an embodiment of any of the methods disclosed herein, the TREM comprises an anticodon that pairs with a stop codon.

TREMs of the disclosure include TREMs, TREM core fragments and TREM fragments. TREMs, TREM core fragments or TREM fragments can be modified with non-naturally occurring modifications to, e.g., increase the level and/or activity (e.g., stability) of the TREM. Pharmaceutical TREM compositions, e.g., comprising TREMs having a non-naturally occurring modification, can be administered to cells, tissues or subjects to modulate these functions, e.g., in vitro or in vivo. Disclosed herein are TREMs, TREM core fragments or TREM fragments comprising non-naturally occurring modifications, TREM compositions, preparations, methods of making TREM compositions and preparations, and methods of using the same.

Additional features of any of the aforesaid TREMs, TREM core fragments, TREM fragments, TREM compositions, preparations, methods of making TREM compositions and preparations, and methods of using TREM compositions and preparations include one or more of the features in the Enumerated Embodiments, Figures, Description, Examples, or Claims.

Those skilled in the art will recognize or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following Enumerated Embodiments, Figures, Description, Examples, or Claims.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a schematic illustrating the activity (log 2 fold change) of modified TREMs containing a 2′-OMe, 2′-F, 2′-OME, 2′-deoxy, and PS modification at each position along an exemplary TREM sequence (TREM-Arg-TGA) over an unmodified TREM, as outlined in Example 11.

ENUMERATED EMBODIMENTS Enumerated Embodiments I

1. A TREM comprising a sequence of Formula A:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2],

wherein:

independently, [L1] and [VL Domain], are optional;

one of [L1], [ASt Domain1], [L2]-[DH Domain], [L3], [ACH Domain], [VL Domain], [TH Domain], [L4], and [ASt Domain2] comprises a nucleotide having a non-naturally occurring modification; and

wherein:

-   -   (a) the TREM has the ability to: support protein synthesis, be         charged by a synthetase, be bound by an elongation factor,         introduce an amino acid into a peptide chain, support         elongation, or support initiation;     -   (b) the TREM comprises at least X contiguous nucleotides without         a non-naturally occurring modification, wherein X is greater         than 10;     -   (c) at least 3, but less than all of the nucleotides of a type         (e.g., A, T, C, G or U) comprise the same non-naturally         occurring modification;     -   (d) at least X nucleotides of a type (e.g., A, T, C, G or U) do         not comprise a non-naturally occurring modification, wherein         X=1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,         19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,         35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 or         50;     -   (e) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) comprise a non-naturally occurring modification;         and/or     -   (f) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) do not comprise a non-naturally occurring         modification.         2. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(a).         3. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(b).         4. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(c).         5. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(d).         6. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(e).         7. The TREM of embodiment 1, comprising the feature provided in         embodiment 1(f).         8. The TREM of embodiment 1, comprising all of the features         provided in embodiments 1(a)-(f).         9. The TREM of any one of embodiments 1-8, wherein the Domain         comprising the non-naturally occurring modification has a         function, e.g., a domain function described herein.         10. The TREM of any one of embodiments 1-8, comprising an [L1].         11. The TREM of any one of embodiments 1-8, comprising a [VL         Domain].         12. The TREM of any one of embodiments 1-8, wherein: [L1] is a         linker comprising a nucleotide having a non-naturally occurring         modification.         13. The TREM of any one of embodiments 1-8, wherein [ASt Domain1         (AstD1)] comprises a nucleotide having a non-naturally occurring         modification.         14. The TREM of any one of embodiments 1-8, wherein [L2] is a         linker comprising a nucleotide having a non-naturally occurring         modification.         15. The TREM of any one of embodiments 1-8, wherein [DH Domain         (DHD)] comprises a nucleotide having a non-naturally occurring         modification.         16. The TREM of any one of embodiments 1-8, wherein [L3] is a         linker comprising a nucleotide having a non-naturally occurring         modification.         17. The TREM of any one of embodiments 1-8, wherein [ACH Domain         (ACHD)] comprises a nucleotide having a non-naturally occurring         modification.         18. The TREM of any one of embodiments 1-8, wherein [VL Domain         (VLD)] comprises a nucleotide having a non-naturally occurring         modification.         19. The TREM of any one of embodiments 1-8, wherein [TH Domain         (THD)] comprises a nucleotide having a non-naturally occurring         modification.         20. The TREM of any one of embodiments 1-8, wherein [L4] is a         linker comprises a nucleotide having a non-naturally occurring         modification.         21. The TREM of any one of embodiments 1-8, wherein: [ASt         Domain2 (AStD2)] comprises a nucleotide having a non-naturally         occurring modification.         22. A TREM core fragment comprising a sequence of Formula B:

[L1]_(y)-[ASt Domain1]_(x)-[L2]_(y)-[DH Domain]_(y)-[L3]_(y)-[ACH Domain]_(x)-[VL Domain]_(y)-[TH Domain]_(y)-[L4]_(y)-[ASt Domain2],

wherein:

-   -   x=1 and y=0 or 1;

one of [ASt Domain1], [ACH Domain], and [ASt Domain2] comprises a nucleotide having a non-naturally occurring modification; and

the TREM has the ability to: support protein synthesis; be able to be charged by a synthetase, be bound by an elongation factor, introduce an amino acid into a peptide chain, support elongation, or support initiation.

23. The TREM core fragment of embodiment 22, wherein AStD1 and AStD2 comprise an ASt Domain (AStD). 24. The TREM core fragment of embodiment 22, wherein the [ASt Domain 1], and/or [ASt Domain 2] comprising the non-naturally occurring modification has the ability to initiate or elongate a polypeptide chain. 25. The TREM core fragment of embodiment 22, wherein the [ACH Domain] comprising the non-naturally occurring modification has the ability to mediate pairing with a codon. 26. The TREM core fragment of embodiment 22, wherein y=1 for any one, two, three, four, five, six, all or a combination of [L1], [L2], [DH Domain], [L3], [VL Domain], [TH Domain], [L4]. 27. The TREM core fragment of embodiment 22, wherein y=0 for any one, two, three, four, five, six, all or a combination of [L1], [L2], [DH Domain], [L3], [VL Domain], [TH Domain], [L4]. 28. The TREM core fragment of embodiment 22, wherein y=1 for linker [L1], and L1 comprises a nucleotide having a non-naturally occurring modification. 29. The TREM core fragment of embodiment 22, wherein y=1 for linker [L2], and L2 comprises a nucleotide having a non-naturally occurring modification. 30. The TREM core fragment of embodiment 22, wherein y=1 for [DH Domain (DHD)], and DHD comprises a nucleotide having a non-naturally occurring modification. 31. The TREM core fragment of embodiment 30, wherein the DHD comprising the non-naturally 25 occurring modification has the ability to mediate recognition of aminoacyl-tRNA synthetase. 32. The TREM core fragment of embodiment 22, wherein y=1 for linker [L3], and L3 comprises a nucleotide having a non-naturally occurring modification. 33. The TREM core fragment of embodiment 22, wherein y=1 for [VL Domain (VLD)], and VLD comprises a nucleotide having a non-naturally occurring modification. 34. The TREM core fragment of embodiment 22, wherein y=1 for [TH Domain (THD)], and THD comprises a nucleotide having a non-naturally occurring modification. 35. The TREM core fragment of embodiment 34, wherein the THD comprising the non-naturally occurring modification has the ability to mediate recognition of the ribosome. 36. The TREM core fragment of embodiment 22, wherein y=1 for linker [L4], and L4 comprises a nucleotide having a non-naturally occurring modification. 37. A TREM fragment comprising a portion of a TREM, wherein the TREM comprises a sequence of Formula A:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2], and wherein:

the TREM fragment comprises:

a non-naturally occurring modification; and

one, two, three or all or any combination of the following:

-   -   (a) a TREM half (e.g., from a cleavage in the ACH Domain, e.g.,         in the anticodon sequence, e.g., a 5′ half or a 3′ half);     -   (b) a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g.,         from a cleavage in a DH Domain or the ACH Domain);     -   (c) a 3′ fragment (e.g., a fragment comprising the 3′ end, e.g.,         from a cleavage in the TH Domain); or     -   (d) an internal fragment (e.g., from a cleavage in any one of         the ACH Domain, DH Domain or TH Domain).         38. The TREM of embodiment 37, wherein the TREM fragment         comprise (a) a TREM half which comprises a nucleotide having a         non-naturally occurring modification.         39. The TREM of embodiment 37, wherein the TREM fragment         comprise (b) a 5′ fragment which comprises a nucleotide having a         non-naturally occurring modification.         40. The TREM of embodiment 37, wherein the TREM fragment         comprise (c) a 3′ fragment which comprises a nucleotide having a         non-naturally occurring modification.         41. The TREM of embodiment 37, wherein the TREM fragment         comprise (d) an internal fragment which comprises a nucleotide         having a non-naturally occurring modification.         42. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein the TREM Domain comprises a plurality of nucleotides         each having a non-naturally occurring modification.         43. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of AStD1 have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6 or 7.         44. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of AStD1 have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6 or 7.         45. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of AStD2 have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6 or 7.         46. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of AStD2 have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6 or 7.         47. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of ACHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.         48. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of ACHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, 16, or 17.         49. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of ACHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.         50. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of ACHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, or 16.         51. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of THD have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.         52. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of THD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, 16, or 17.         53. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of THD have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.         54. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of THD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, or 16.         55. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of DHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 2, 3, 4, 5, 6, 7, 8, 9 or 10.         56. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of DHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, 16, 17, 18 or 19.         57. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of DHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.         58. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein no more than X of the nucleotides of DHD have a         non-naturally occurring modification, wherein X is equal to or         greater than 11, 12, 13, 14, 15, 16, 17, or 18.         59. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of the VLD have a         non-naturally occurring modification, wherein X is equal to or         greater than 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,         17, 18, 19, 20, 50, 100, 150, 200 or 271.         60. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein all of the nucleotides of the AStD1, AStD2, ACHD,         DHD, and/or THD have a non-naturally occurring modification.         61. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of AStD1 and/or AStD2         do not have a non-naturally occurring modification, wherein X is         equal to or greater than 1, 2, 3, 4, 5, 6 or 7.         62. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of ACHD do not have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,         16, or 17.         63. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of THD do not have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,         16, or 17.         64. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of DHD do not have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,         16, 17, 18 or 19.         65. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of VLD do not have a         non-naturally occurring modification, wherein X is equal to or         greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,         16, 17, 18, 19, 20, 50, 100, 150, 200 or 271.         66. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein the TREM Linker L2 comprises two nucleotides each         having a non-naturally occurring modification.         67. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein at least X of the nucleotides of the TREM Linker do         not have a non-naturally occurring modification, wherein X is         equal to 1 or 2.         68. The TREM of any one of embodiments 1-8, the TREM core         fragment of embodiment 22, or the TREM fragment of embodiment         37, wherein:

each of a plurality of TREM Domains and Linkers comprises a nucleotide having a non-naturally occurring modification.

69. The TREM, TREM core fragment or TREM fragment of embodiment 68, wherein one of the TREM Domains and Linkers of the plurality comprises a plurality of nucleotides each having a non-naturally occurring modification. 70. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a modification in a base or a backbone of a nucleotide, e.g., a modification chosen from any one of Tables 5-9. 71. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a base modification chosen from a modification listed in Table 5. 72. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a base modification chosen from a modification listed in Table 6. 73. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a base modification chosen from a modification listed in Table 7. 74. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a backbone base modification chosen from a modification listed in Table 8. 75. The TREM, TREM core fragment or TREM fragment of any of the preceding embodiments, wherein the non-naturally occurring modification is a backbone modification chosen from a modification listed in Table 9. 76. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, comprising a nucleotide of a first type comprising a non-naturally occurring modification. 77. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, comprising a nucleotide of a first type and a nucleotide of a second type comprising a non-naturally occurring modification. 78. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein the non-naturally occurring modification on the nucleotide of the first type and the non-naturally occurring modification on the nucleotide of the second type are the same non-naturally occurring modification. 79. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein the non-naturally occurring modification on the nucleotide of the first type and the non-naturally occurring modification on the nucleotide of the second type are different non-naturally occurring modifications. 80. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is chosen from: A, T, C, G or U. 81. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the second type is chosen from: A, T, C, G or U. 82. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is an A. 83. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is a G. 84. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is a C. 85. The TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is a T. 86. The TREM, TREM core fragment or TREM fragment of embodiments 76 or 77, wherein the nucleotide of the first type is a U. 87. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein when the nucleotide of the first type is an A, the nucleotide of the second type is chosen from: T, C, G or U. 88. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein when the nucleotide of the first type is a G, the nucleotide of the second type is chosen from: T, C, A or U. 89. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein when the nucleotide of the first type is a C, the nucleotide of the second type is chosen from: T, A, G or U. 90. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein when the nucleotide of the first type is a T, the nucleotide of the second type is chosen from: A, C, G or U. 91. The TREM, TREM core fragment or TREM fragment of embodiment 77, wherein when the nucleotide of the first type is a U, the nucleotide of the second type is chosen from: T, C, G or A. 92. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the non-naturally modification is in a purine (A or G). 93. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the non-naturally modification is not in a purine (A or G). 94. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the non-naturally modification is in a pyrimidine (U, T or C). 95. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the non-naturally modification is not in a pyrimidine (U, T or C). 96. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the DHD has a first sequence, a second sequence and a third sequence, optionally wherein the first sequence and the third sequence form a stem and the second sequence forms a loop, e.g., under physiological conditions. 97. The TREM, TREM core fragment or TREM fragment of embodiment 96, wherein the DHD comprises a non-naturally occurring modification in the first sequence or the third sequence, e.g., in the stem. 98. The TREM, TREM core fragment or TREM fragment of embodiment 96, wherein the DHD comprises a non-naturally occurring modification in the second sequence, e.g., in the loop. 100. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the ACHD has a first sequence, a second sequence and a third sequence, optionally wherein the first sequence and the third sequence form a stem and the second sequence forms a loop, e.g., under physiological conditions. 101. The TREM, TREM core fragment or TREM fragment of embodiment 100, wherein the ACHD comprises a non-naturally occurring modification in the first sequence or the third sequence, e.g., in the stem. 102. The TREM, TREM core fragment or TREM fragment of embodiment 100, wherein the ACHD comprises a non-naturally occurring modification in the second sequence, e.g., in the loop. 103. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the THD has a first sequence, a second sequence and a third sequence, optionally wherein the first sequence and the third sequence form a stem and the second sequence forms a loop, e.g., under physiological conditions. 104. The TREM, TREM core fragment or TREM fragment of embodiment 103, wherein the THD comprises a non-naturally occurring modification in the first sequence or the third sequence, e.g., in the stem. 105. The TREM, TREM core fragment or TREM fragment of embodiment 103, wherein the THD comprises a non-naturally occurring modification in the second sequence, e.g., in the loop. 106. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the VLD comprises a variable region having 1-271 nucleotides. 107. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM comprises at least X contiguous nucleotides without a non-naturally occurring modification, wherein X is greater than 10. 108. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein at least 3, but less than all of the nucleotides of a type (e.g., A, T, C, G or U) comprise the same non-naturally occurring modification. 109. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein at least X nucleotides of a type (e.g., A, T, C, G or U) do not comprise a non-naturally occurring modification, wherein X=1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 or 50. 110. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein no more than 5, 10, or 15 of a type (e.g., A, T, C, G or U) comprise a non-naturally occurring modification. 111. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein no more than 5, 10, or 15 of a type (e.g., A, T, C, G or U) do not comprise a non-naturally occurring modification. 112. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, which specifies X, wherein X is an amino acid selected from alanine, arginine, asparagine, aspartate, cysteine, glutamine, glutamate, glycine, histidine, isoleucine, methionine, leucine, lysine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, or valine. 113. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, which recognizes a codon provided in Table 8 or Table 9. 114. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM is a cognate TREM. 115. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM is a non-cognate TREM. 116. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment, or TREM fragment is encoded by a sequence provided in Table 1, e.g., any one of SEQ ID NOs 1-451. 117. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment, or TREM fragment is encoded by a consensus sequence chosen from any one of SEQ ID NOs: 562-621. 118. The TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment, or TREM fragment is encoded by a consensus sequence chosen from any one of SEQ ID NOs: 622-1187. 119. A pharmaceutical composition comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37. 120. The pharmaceutical composition of embodiment 119, comprising a pharmaceutically acceptable component, e.g., an excipient. 121. A lipid nanoparticle formulation comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37. 122. A method of making a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, comprising linking a first nucleotide to a second nucleotide to form the TREM. 123. The method of embodiment 122, wherein the TREM, TREM core fragment or TREM fragment is synthetic (e.g, non-naturally occurring). 124. The method of embodiment 122 or 123, wherein the synthesis is performed in vitro. 125. The method of embodiment 122, wherein the TREM, TREM core fragment or TREM fragment is made by cell-free solid phase synthesis. 126. A cell comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37. 127. A cell comprising a TREM, TREM core fragment or TREM fragment made according to the method of embodiment 122. 128. A method of modulating a tRNA pool in a cell comprising:

providing a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, and

contacting the cell with the TREM, TREM core fragment or TREM fragment,

thereby modulating the tRNA pool in the cell.

129. A method of contacting a cell, tissue, or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, comprising

contacting the cell, tissue or subject with the TREM, TREM core fragment or TREM fragment,

thereby contacting the cell, tissue, or subject with the TREM, TREM core fragment or TREM fragment.

130. A method of presenting a TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject with a TREM, TREM core fragment or TREM fragment, comprising

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby presenting the TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject.

131. A method of forming a TREM, TREM core fragment or TREM fragment-contacted cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby forming a TREM, TREM core fragment or TREM fragment-contacted cell, tissue, or subject.

132. A method of using a TREM, TREM core fragment or TREM fragment comprising,

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby using the TREM.

133. A method of applying a TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby applying a TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject.

134. A method of exposing a cell, tissue, or subject to a TREM, comprising

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby exposing a cell, tissue, or subject to a TREM, TREM core fragment or TREM fragment.

135. A method of forming an admixture of a TREM, TREM core fragment or TREM fragment and a cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, thereby forming an admixture of a TREM, TREM core fragment or TREM fragment and a cell, tissue, or subject.

136. A method of delivering a TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject, comprising:

providing a cell, tissue, or subject, and contacting the cell, tissue, or subject, a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37.

137. A method, e.g., an ex vivo method, of modulating the metabolism, e.g., the translational capacity of an organelle, comprising:

providing a preparation of an organelle, e.g., mitochondria or chloroplasts, and contacting the organelle with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37.

138. A method of treating a subject, e.g., modulating the metabolism, e.g., the translational capacity of a cell, in a subject, comprising:

providing, e.g., administering to the subject a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37,

thereby treating the subject.

139. A method of modulating a tRNA pool in a cell comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the cell, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the cell;

contacting the cell with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the cell,

thereby modulating the tRNA pool in the cell.

140. A method of modulating a tRNA pool in a subject having an endogenous open reading frame (ORF), which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the subject, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the subject;

contacting the subject with a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the subject,

thereby modulating the tRNA pool in the subject.

141. A method of modulating a tRNA pool in a subject having an endogenous open reading frame (ORF) comprising a codon comprising a synonymous mutation (a synonymous mutation codon or SMC), comprising:

providing a composition comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment or TREM fragment comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the subject with the composition in an amount and/or for a time sufficient to modulate the tRNA pool in the subject,

thereby modulating the tRNA pool in the subject.

142. A method of modulating a tRNA pool in a cell comprising an endogenous open reading frame (ORF) comprising a codon comprising a synonymous mutation (a synonymous mutation codon or SMC), comprising:

providing a composition comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, wherein the TREM, TREM core fragment or TREM fragment comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the cell with the composition comprising a TREM in an amount and/or for a time sufficient to modulate the tRNA pool in the cell,

thereby modulating the tRNA pool in the cell.

143. A method of modulating expression of a protein in a cell, wherein the protein is encoded by a nucleic acid comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a mutation, comprising:

contacting the cell with a composition comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37 in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the cell.

144. A method of modulating expression of a protein in a subject, wherein the protein is encoded by a nucleic acid comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a mutation, comprising:

contacting the subject with a composition comprising a TREM of any one of embodiments 1-8, the TREM core fragment of embodiment 22, or the TREM fragment of embodiment 37, in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM, TREM core fragment or TREM fragment has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the subject.

145. The method of embodiment 143 or 144, wherein the mutation in the ORF is a nonsense mutation, e.g., resulting in a premature stop codon chosen from UAA, UGA or UAG. 146. The method of embodiment 143 or 144, wherein the TREM comprises an anticodon that pairs with a stop codon.

Enumerated Embodiments II

1000. A TREM comprising a nucleotide (at a position identified herein) comprising a non-naturally occurring modification or a nucleotide (at a position identified herein) lacking a non-naturally occurring modification. 1001. The TREM of embodiment 1000, comprising the following structure:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2].

1002. A TREM comprising a sequence of Formula A:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2],

wherein:

independently, [L1] and [VL Domain], are optional;

one of [L1], [ASt Domain1], [L2]-[DH Domain], [L3], [ACH Domain], [VL Domain], [TH Domain], [L4], and [ASt Domain2] comprises a nucleotide having a non-naturally occurring modification; and

wherein:

-   -   (a) the TREM has the ability to: (i) support protein         synthesis, (ii) be charged by a synthetase, (iii) be bound by an         elongation factor, (iv) introduce an amino acid into a peptide         chain, (v) support elongation, or (vi) support initiation;     -   (b) the TREM comprises X₁ contiguous nucleotides without a         non-naturally occurring modification, wherein X₁ is 3, 4, 5, 6,         7, 8, 9, 10 or greater;     -   (c) the TREM comprises X₂ non-naturally occurring modifications,         wherein X₂ is, 2, 3, 4, or greater;     -   (d) the TREM comprises X₃ different non-naturally occurring         modifications, wherein X₃ is, 2, 3, 4, or greater;     -   (e) 3 nucleotides, wherein less than all of the nucleotides of a         type (e.g., A, T, C, G or U) comprise the same non-naturally         occurring modification;     -   (f) X₄ nucleotides of a type (e.g., A, T, C, G or U) do not         comprise a non-naturally occurring modification, wherein X₄ is         equal to or greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,         13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28,         29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44,         45, 46, 47, 48, 49 or 50;     -   (g) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) comprise a non-naturally occurring modification;         and/or     -   (h) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) do not comprise a non-naturally occurring         modification; and/or the ACH Domain comprises a non-extended         anticodon.         1003. The TREM of any preceding embodiment, wherein:     -   (a) the TREM has the ability to: (i) support protein         synthesis, (ii) be charged by a synthetase, (iii) be bound by an         elongation factor, (iv) introduce an amino acid into a peptide         chain, (v) support elongation, or (vi) support initiation.         1004. The TREM of any preceding embodiment, wherein:     -   (b) the TREM comprises X₁ contiguous nucleotides without a         non-naturally occurring modification, wherein X₁ is 10 or         greater.         1005. The TREM of any preceding embodiment, wherein: the TREM         comprises at X₂ non-naturally occurring modifications, wherein         X₂ is, 2, 3, 4, or greater.         1006. The TREM of any preceding embodiment, wherein:     -   (c) the TREM comprises X₃ different non-naturally occurring         modifications, wherein X₃ is, 2, 3, 4, or greater.         1007. The TREM of any preceding embodiment, wherein:     -   (d) 3 nucleotides, wherein less than all of the nucleotides of a         type (e.g., A, T, C, G or U) comprise the same non-naturally         occurring modification.         1008. The TREM of any preceding embodiment, wherein:     -   (e) X₄ nucleotides of a type (e.g., A, T, C, G or U) do not         comprise a non-naturally occurring modification, wherein X₄ is         equal to or greater than 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,         13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28,         29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44,         45, 46, 47, 48, 49 or 50.         1009. The TREM of any preceding embodiment, wherein:     -   (f) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) comprise a non-naturally occurring modification.         1010. The TREM of any preceding embodiment, wherein:     -   (g) no more than 5, 10, or 15 nucleotides of a type (e.g., A, T,         C, G or U) do not comprise a non-naturally occurring         modification; and/or the ACH Domain comprises a non-extended         anticodon.         1011. The TREM of any preceding embodiment wherein the ACH         Domain comprises a non-extended anticodon or does not include an         extended anticodon.         1012. A TREM fragment comprising a portion of a TREM, wherein         the TREM comprises a sequence of Formula A:

[L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2], and wherein:

the TREM fragment comprises:

a non-naturally occurring modification; and

one, two, three or all or any combination of the following:

-   -   (a) a TREM half (e.g., from a cleavage in the ACH Domain, e.g.,         in the anticodon sequence, e.g., a 5′ half or a 3′ half);     -   (b) a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g.,         from a cleavage in a DH Domain or the ACH Domain);     -   (c) a 3′ fragment (e.g., a fragment comprising the 3′ end, e.g.,         from a cleavage in the TH Domain); or     -   (d) an internal fragment (e.g., from a cleavage in any one of         the ACH Domain, DH Domain or TH Domain).         1013. The TREM or TREM fragment of any of the above embodiments,         comprising a non-naturally occurring modification on a         nucleotide sugar moiety (2′-modification) or in the TREM         backbone.         1014. The TREM or TREM fragment of any of the above embodiments,         comprising a nucleotide comprising a 2′ non-naturally occurring         modification on the sugar moiety.         1015. The TREM or TREM fragment of any of the above embodiments,         wherein the nucleotide corresponds to any of nucleotides 1-76 of         SEQ ID NO: 622, nucleotides 1-85 of SEQ ID NO: 993, or         nucleotides 1-75 of SEQ ID NO: 1079 is modified.         1016. The TREM or TREM fragment of embodiments 1000-1015,         wherein the nucleotide is in the ASt Domain1.         1017. The TREM or TREM fragment of embodiments 1000-1016,         wherein the nucleotide is in the DH Domain.         1018. The TREM or TREM fragment of embodiments 1000-1017,         wherein the nucleotide is in the ACH Domain.         1019. The TREM or TREM fragment of embodiments 1000-1018,         wherein the nucleotide is in the VL Domain.         1020. The TREM or TREM fragment of embodiments 1000-1019,         wherein the nucleotide is in the TH Domain.         1021. The TREM or TREM fragment of embodiments 1000-1020,         wherein the nucleotide is in the ASt Domain2.         1022. The TREM or TREM fragment of embodiments 1000-10021,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1023. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 2, 4, 6, 10, 12, 13, 17, 18, 20, 22, 29, 30, 42, 43, 45, 50,         52, 56, 59, 61, 65, 66, 68, 69, 71, 72, and 73 of SEQ ID NO: 622         is modified.         1024. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         20, 29, 33, 40, 41, 44, 45, 48, 49, 50, 52, 53, 54, 56, 59, 61,         62, 63, 65, 67, 68, 69, 71, 72, 75, and 76 of SEQ ID NO: 622 is         modified.         1025. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 4, 14, 15, 16, 17, 20, 29, 44, 45, 47, 49, 50, 52, 54, 56,         57, 59, 65, 72, and 73 of SEQ ID NO: 622 is modified.         1026. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         3, 4, 5, 6, 14, 15, 16, 20, 22, 23, 33, 54, 59, 62, 63, 72, and         76 of SEQ ID NO: 622 is modified.         1027. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 2, 3, 9, 14, 15, 16, 17, 18, 19, 20, 21, 35, 37, 38, 44, 45,         46, 52, 54, 55, 56, 57, 58, 73, and 74 of SEQ ID NO: 622 is         modified.         1028. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 17, 18, 20, 29, 30, 50, 52, and 73 of SEQ ID NO: 622 is         modified.         1029. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 4, 5, 34, 38, 39, 61, 79, 80, and 82 of SEQ ID NO: 993 is         modified.         1030. The TREM or TREM fragment of embodiments 1000-1022,         wherein the nucleotide corresponding to any one of nucleotides         1, 4, 12, 13, 17, 18, 23, 28, 29, 30, 38, 39, 41, 44, 48, 49,         51, 52, 53, 58, 60, 61, 63, 64, 65, 66, 68, 69, 71, 72, 73, 74,         and 75 of SEQ ID NO: 1079 is modified.         1031. The TREM or TREM fragment of embodiments 1000-1014,         wherein the 2′ non-naturally occurring modification comprises an         ester, halo, hydrogen, alkyl group.         1032. The TREM or TREM fragment of embodiments 1000-1014,         wherein the 2′ non-naturally occurring modification comprises a         2′-OMe moiety.         1033. The TREM or TREM fragment of embodiments 1000-1024,         wherein the 2′ non-naturally occurring modification comprises a         2′-MOE moiety.         1034. The TREM or TREM fragment of embodiments 1000-1014,         wherein the 2′ non-naturally occurring modification comprises a         2′-halo (e.g., 2′-F or 2′Cl).         1035. The TREM or TREM fragment of embodiments 1000-1014,         wherein the 2′ non-naturally occurring modification comprises a         2′-deoxy group (e.g., a 2′-H).         1036. The TREM or TREM fragment of any of embodiments 1000-1035,         comprising a nucleotide that lacks a non-naturally occurring         modification, e.g., lacks a 2′ non-naturally occurring         modification on a sugar moiety.         1037. The TREM or TREM fragment of any of embodiment 1036,         wherein the nucleotide corresponds to any of nucleotides 1-76 of         SEQ ID NO:622 and lacks a non-naturally occurring modification.         1038. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the ASt Domain1.         1039. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the DH Domain.         1040. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the ACH Domain.         1041. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the VL Domain.         1042. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the TH Domain.         1043. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in the ASt Domain2.         1044. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide is in a linker domain (e.g., [L1], [L2], [L3], or         [L4]).         1045. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide corresponds to any one of nucleotides 1-76 of SEQ ID         NO: 622 and lacks a non-naturally occurring modification, e.g.,         2′ non-naturally occurring modification on a sugar.         1046. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide corresponding to any one of nucleotides 1-85 of SEQ         ID NO: 993 lacks a non-naturally occurring modification, e.g., a         2′ non-naturally occurring modification on a sugar.         1047. The TREM or TREM fragment of embodiment 1036, wherein the         nucleotide corresponding to any one of nucleotides 1-75 of SEQ         ID NO: 1079 lacks a non-naturally occurring modification, e.g.,         a 2′ non-naturally occurring modification on a sugar.         1048. The TREM or TREM fragment of any one of embodiments         1000-1047, comprising a nucleotide comprising a 2′ OMe         non-naturally occurring modification.         1049. The TREM or TREM fragment of embodiment 1000-1048, wherein         the nucleotide corresponds to any of nucleotides 1-76 of SEQ ID         NO: 622 is modified.         1050. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the ASt Domain1.         1051. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the DH Domain.         1052. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the ACH Domain.         1053. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the VL Domain.         1054. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the TH Domain.         1055. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in the ASt Domain2.         1056. The TREM or TREM fragment of any of embodiment 1048-1049,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1057. The TREM or TREM fragment of any of embodiment 1048-1056,         wherein the nucleotide corresponding to any one of nucleotides         1, 2, 4, 6, 10, 12, 13, 17, 18, 20, 22, 29, 30, 42, 43, 45, 50,         52, 56, 59, 61, 65, 66, 68, 69, 71, 72, and 73 of SEQ ID NO: 622         is modified (e.g., a sequence in Table 15).         1058. The TREM or TREM fragment of any of embodiment 1000-1047,         comprising a nucleotide comprising a nucleotide that lacks a         non-naturally occurring modification, e.g., lacks a 2′ OMe         modification on a sugar moiety.         1059. The TREM or TREM fragment of embodiment 1058, wherein the         nucleotide corresponds to any of nucleotides 1-76 of SEQ ID NO:         622 lacks a non-naturally occurring modification, e.g., lacks a         2′ OMe modification on a sugar moiety.         1060. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the ASt Domain1.         1061. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the DH Domain.         1062. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the ACH Domain.         1063 The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the VL Domain.         1064. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the TH Domain.         1065. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in the ASt Domain2.         1066. The TREM or TREM fragment of any of embodiment 1058-1059,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1067. The TREM or TREM fragment of any of embodiment 1000-1066,         comprising a nucleotide comprising a 2′ halo, e.g., a 2′ fluoro,         non-naturally occurring modification on a sugar moiety.         1068. The TREM or TREM fragment of embodiment 1067, wherein the         2′ halo is 2′ fluoro.         1069. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide corresponding to any of nucleotides 1-76 of SEQ         ID NO: 622 is modified.         1070. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the ASt Domain1.         1071. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the DH Domain.         1072. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the ACH Domain.         1073. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the VL Domain.         1074. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the TH Domain.         1075. The TREM or TREM fragment of embodiment 1067-1068, wherein         the nucleotide is in the ASt Domain2.         1076. The TREM or TREM fragment of any of embodiment 1067-1068,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1077. The TREM or TREM fragment of any of embodiment 1067-1076,         wherein the nucleotide corresponding to any one of nucleotides         20, 29, 33, 40, 41, 44, 45, 48, 49, 50, 52, 53, 54, 56, 59, 61,         62, 63, 65, 67, 68, 69, 71, 72, 75, and 76 of SEQ ID NO: 622 is         modified.         1078. The TREM or TREM fragment of any of embodiment 1000-1035,         comprising a nucleotide that lacks a non-naturally occurring         modification, e.g., lacks a 2′ halo, e.g., a 2′ fluoro,         non-naturally occurring modification on a sugar moiety.         1079. The TREM or TREM fragment of embodiment 1078, wherein 2′         halo is 2′ fluoro.         1080. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide corresponds to any of nucleotides 1-76 of         SEQ ID NO: 622 and lacks a non-naturally occurring modification.         1081. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the ASt Domain1.         1082. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the DH Domain.         1083. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the ACH Domain.         1084. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the VL Domain.         1085. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the TH Domain.         1086. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in the ASt Domain2.         1087. The TREM or TREM fragment of any of embodiments 1078-1079,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1088. The TREM or TREM fragment of any of embodiment 1000-1013,         wherein the nucleotide corresponding to any one of nucleotides         20, 29, 33, 40, 41, 44, 45, 48, 49, 50, 52, 53, 54, 56, 59, 61,         62, 63, 67, 68, 69, 71, 72, 75, and 76 of SEQ ID NO: 622 lacks a         non-naturally occurring modification, e.g., a 2′ fluoro         non-naturally occurring modification on the sugar.         1089. The TREM or TREM fragment of any of embodiments 1000-1088,         wherein the non-naturally occurring modification comprises a 2′         deoxy nucleotide.         1090. The TREM or TREM fragment of embodiment 1084, wherein the         2′ deoxy nucleotide corresponds to any of nucleotides 1-76 of         SEQ ID NO: 622 is modified.         1091. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the ASt Domain1.         1092. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the DH Domain.         1093. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the ACH Domain.         1094. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the VL Domain.         1095. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the TH Domain.         1096. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the 2′ deoxy nucleotide is in the ASt Domain2.         1097. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1098. The TREM or TREM fragment of any of embodiments 1089-1090,         wherein the nucleotide corresponding to any one of nucleotides         3, 4, 5, 6, 14, 15, 16, 20, 22, 23, 33, 54, 59, 62, 63, 72, and         76 of SEQ ID NO: 622 is a 2′ deoxy nucleotide.         1099. The TREM or TREM fragment of any of embodiments 1000-1092,         comprising an 2′-OH nucleotide.         1100. The TREM or TREM fragment of embodiment 1099, wherein the         2′-OH nucleotide corresponds to any of nucleotides 1-76 of SEQ         ID NO:622.         1101. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the ASt Domain1.         1102. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the DH Domain.         1103. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the ACH Domain.         1104. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the VL Domain.         1105. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the TH Domain.         1106. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in the ASt Domain2.         1107. The TREM or TREM fragment of any of embodiments 1099-1100,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1109. The TREM or TREM fragment of any of embodiment 1000-1100,         wherein the nucleotide corresponding to any one of nucleotides         3, 4, 5, 6, 14, 15, 16, 20, 22, 23, 33, 54, 59, 62, 63, 72, and         76 of SEQ ID NO: 622 is a 2′-OH nucleotide.         1110. The TREM or TREM fragment of any of embodiments 1000-1109,         wherein the non-naturally occurring modification comprises a 2′         methoxyethyl (MOE) nucleotide.         1111. The TREM or TREM fragment of embodiment 1110, wherein the         nucleotide corresponds to any of nucleotides 1-76 of SEQ ID NO:         622.         1112. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the ASt Domain1.         1113. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the DH Domain.         1114. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the ACH Domain.         1115. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the VL Domain.         1116. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the TH Domain.         1117. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in the ASt Domain2.         1118. The TREM or TREM fragment of any of embodiments 1110-1111,         wherein the 2′-MOE nucleotide is in a linker domain (e.g., [L1],         [L2], [L3], or [L4]).         1119. The TREM or TREM fragment of any of embodiments 1110-1118,         wherein the nucleotide corresponding to any one of nucleotides         1, 4, 14, 15, 16, 17, 20, 29, 44, 45, 47, 49, 50, 52, 54, 56,         57, 59, 65, 72, and 73 of SEQ ID NO: 622 is a 2′-MOE nucleotide.         1120. The TREM or TREM fragment of any of embodiments 1000-1109,         comprising a nucleotide that lacks a non-naturally occurring         modification, e.g., lacks a 2-MOE, e.g., a non-naturally         occurring modification on a sugar moiety.         1121. The TREM or TREM fragment of embodiment 1120, wherein the         nucleotide corresponds to any of nucleotides 1-76 of SEQ ID NO:         622 and lacks a non-naturally occurring modification.         1122. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the ASt Domain1.         1123. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the DH Domain.         1124. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the ACH Domain.         1125. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the VL Domain.         1126. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the TH Domain.         1127. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in the ASt Domain2.         1128. The TREM or TREM fragment of any of embodiments 1120-1121,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1129. The TREM or TREM fragment of any of embodiments 1120-1128,         wherein the nucleotide corresponding to any one of nucleotides         1, 4, 14, 15, 16, 17, 20, 29, 44, 45, 47, 49, 50, 52, 54, 56,         57, 59, 65, 72, and 73 of SEQ ID NO: 622 and lacks a 2′-MOE         nucleotide.         1130. The TREM or TREM fragment of any of embodiment 1000-1129,         comprising a modified backbone, e.g., a modification of the         phosphate moiety attached to the 5′ or 3′ carbon of the sugar         moiety of a nucleotide.         1131. The TREM or TREM fragment of embodiment 1130, wherein the         phosphate moiety attached to the 5′ carbon is modified.         1132. The TREM or TREM fragment of embodiment 1130, wherein the         phosphapte moiety attached to the 3′ carbon is modified.         1133. The TREM or TREM fragment of embodiment 1130, wherein the         modification comprises a phosphothioate moiety.         1134. The TREM or TREM fragment of embodiments 1130-1133,         wherein the nucleotide corresponds to any of nucleotides 1-76 of         SEQ ID NO: 622 is modified.         1135. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the ASt Domain1.         1136. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the DH Domain.         1137. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the ACH Domain.         1138. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the VL Domain.         1139. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the TH Domain.         1140. The TREM or TREM fragment of embodiments 1130-1133,         wherein the modified nucleotide is in the ASt Domain2.         1141. The TREM or TREM fragment of any of embodiments 1130-1133,         wherein the nucleotide is in a linker domain (e.g., [L1], [L2],         [L3], or [L4]).         1142. The TREM or TREM fragment of embodiments 1130-1133,         wherein the nucleotide corresponding to any one of nucleotides         1, 2, 3, 9, 14, 15, 16, 17, 18, 19, 20, 21, 35, 37, 38, 44, 45,         46, 52, 54, 55, 56, 57, 58, 73, and 74 of SEQ ID NO: 622 is         backbone modified, e.g., with a phosphorothioate moiety.         1142. The TREM or TREM fragment of embodiments 1130-1141,         wherein the nucleotide corresponding to any one of nucleotides         14, 15, 16, 17, 18, 20, 44, 45, 47, 54, 56, 57, and 59 of SEQ ID         NO: 622 is backbone modified, e.g., with a phosphorothioate         moiety.         1143. The TREM or TREM fragment of embodiments 1000-1142,         lacking a backbone modification, e.g., a phosphorothioate         moiety.         1144. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified corresponds to any of         nucleotides 1-76 of SEQ ID NO: 622.         1145. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the ASt Domain1.         1146. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the DH Domain.         1147. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the ACH Domain.         1148. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the VL Domain.         1149. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the TH Domain.         1150. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in the ASt Domain2.         1151. The TREM or TREM fragment of embodiment 1143, wherein the         nucleotide which is not backbone modified is in a linker domain         (e.g., [L1], [L2], [L3], or [L4]).         1152. The TREM or TREM fragment of any of embodiments 1000-1151,         wherein the nucleotide corresponding to any one of nucleotides         1, 2, 3, 9, 14, 15, 16, 17, 18, 19, 20, 21, 35, 37, 38, 44, 45,         46, 52, 54, 55, 56, 57, 58, 73, and 74 of SEQ ID NO: 622 is not         backbone modified.         1153. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 15 is         modified with a 2′-O Me.         1154. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 15 is         modified with a 2′-O Me.         1155. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 15 is         modified with a 2′-O Me.         1156. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 15 is not         modified.         1157. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 15 is not         modified.         1158. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 15 is not         modified.         1159. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 21 is         modified with a 2′-O Me.         1160. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 21 is         modified with a 2′-O Me.         1161. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 21 is         modified with a 2′-O Me.         1162. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 21 is not         modified.         1163. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 21 is not         modified.         1164. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 21 is not         modified.         1165. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 22 is         modified with a 2′-O Me.         1166. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 22 is         modified with a 2′-O Me.         1167. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 22 is         modified with a 2′-O Me.         1168. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 22 is not         modified.         1169. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 22 is not         modified.         1170. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 22 is not         modified.         1171 The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 17 is         modified with a 2′-MOE.         1172. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 17 is         modified with a 2′-MOE.         1173. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 17 is         modified with a 2′-MOE.         1174. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 17 is not         modified.         1175. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 17 is not         modified.         1176. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 17 is not         modified.         1177. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 16 is         modified with a 2′-fluoro.         1178. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 16 is         modified with a 2′-fluoro.         1179. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 16 is         modified with a 2′-fluoro.         1180. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 16 is not         modified.         1181. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 16 is not         modified.         1182. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 16 is not         modified.         1183. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 18 is         modified to be a 2′-deoxy.         1184. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 18 is         modified to be a 2′-deoxy.         1185. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 18 is         modified to be a 2′-deoxy.         1186. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 18 is not         modified.         1187. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 18 is not         modified.         1188. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 18 is not         modified.         1189. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 19 comprises         a phosphorothate.         1190. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 19 comprises         a phosphorothate.         1191. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 19 comprises         a phosphorothate.         1192. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 3 for the 100 nm for the sequence in Table 19 is not         modified.         1193. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 2 for the 100 nm for the sequence in Table 19 is not         modified.         1194. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein a position corresponding to a modified position having a         value of 1 for the 100 nm for the sequence in Table 19 is not         modified.         1195. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein the TREM comprises an anticodon specific for an amino         acid from Table 1.         1196. The TREM or TREM fragment of any of embodiments 1000-1152,         wherein the TREM comprises an anticodon of Table 1.         1197. The TREM or TREM fragment of any of embodiments 1000-1196,         comprising a first and a second non-naturally occurring         modification.         1198. The TREM or TREM fragment of embodiment 1197, comprising a         third non-naturally occurring modification.         1199. The or TREM fragment of any of embodiments 1197-1198,         comprising, wherein the first and second non-naturally occurring         modifications are the same non-naturally occurring modification.         1200. The TREM or TREM fragment of any of embodiments 1197-1198,         comprising wherein the first and second non-naturally occurring         modifications are different non-naturally occurring         modifications.         1201. The TREM or TREM fragment of any of embodiments 1197-1198,         comprising wherein the first and second non-naturally occurring         modification are on the same nucleotide.         1202. The TREM or TREM fragment of any of embodiments 1197-1198,         wherein the first and second non-naturally occurring         modification are on the different nucleotides.         1203. The TREM or TREM fragment of any of embodiments 1197-1198,         wherein the first and second non-naturally occurring         modifications are in the same domain.         1204. The TREM or TREM fragment of any of embodiments 1197-1198,         wherein the first and second non-naturally occurring         modifications are in different domains.         1205. The TREM or TREM fragment of any one the preceding         embodiments, wherein the domain comprising the non-naturally         occurring modification has a function, e.g., a domain function         described herein.         1206. The TREM or TREM fragment of any of the preceding         embodiments, wherein the TREM has at least X % sequence identity         with a sequence described herein, e.g., with SEQ ID NO: 622, SEQ         ID NO: 993, or SEQ ID NO: 1079, or a consensus sequence         disclosed herein, e.g., from Table 9 or 10, wherein X=60, 70,         75, 80, 85, 90, or 95.         1207. The TREM or TREM fragment of embodiment 1206, wherein         X=60.         1208. The TREM or TREM fragment of embodiment 1206, wherein         X=70.         1209. The TREM or TREM fragment of embodiment 1206, wherein         X=75.         1210. The TREM or TREM fragment of embodiment 1206, wherein         X=80.         1211. The TREM or TREM fragment of embodiment 1206, wherein         X=85.         1212. The TREM or TREM fragment of embodiment 1206, wherein         X=90.         1213. The TREM or TREM fragment of embodiment 1206, wherein         X=95.         1214. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of any of Tables 15-22.         1215. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 15.         1216. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 16.         1217. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 17.         1218. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 18.         1219. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 19.         1220. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 20.         1221. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 21.         1222. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a position corresponding to a         position that is modified in a row of Table 22.         1223. The TREM or TREM fragment of any of embodiments 1001-1213,         having a modified nucleotide at a first and a modified         nucleotide at a second position, wherein the first and second         positions correspond to positions that are modified in any one         row of Table 22.         1224. A pharmaceutical composition comprising a TREM or TREM         fragment of any of the preceding embodiments.         1225. The pharmaceutical composition of embodiment 1224,         comprising a pharmaceutically acceptable component, e.g., an         excipient.         1226. A lipid nanoparticle formulation comprising a TREM or TREM         fragment of any one of embodiments 1000-1213, or a         pharmaceutical composition of any one of claims 1224-1225.         1227. A method of making a TREM or TREM fragment of any of         embodiments 1000-1213, comprising linking a first nucleotide to         a second nucleotide to form the TREM or TREM fragment.         1228. The method of embodiment 1227, wherein the TREM or TREM         fragment is non-naturally occurring (e.g., synthetic).         1229. The method of embodiment 1227, wherein the synthesis is         performed in vitro.         1230. The method of embodiment 1227, wherein the TREM or TREM         fragment is made by cell-free solid phase synthesis.         1231. A cell comprising a TREM or TREM fragment of any of         embodiments 1000-1213.         1232. A method of modulating a tRNA pool in a cell comprising:

providing a TREM or TREM fragment of any of embodiments 1000-1213, and

contacting the cell with the TREM,

thereby modulating the tRNA pool in the cell.

1233. A method of contacting a cell, tissue, or subject with a TREM or TREM fragment of any of embodiments 1000-1213, comprising

contacting the cell, tissue or subject with the TREM,

thereby contacting the cell, tissue, or subject with the TREM.

1234. A method of presenting a TREM or TREM fragment, to a cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby presenting the TREM, TREM core fragment or TREM fragment to a cell, tissue, or subject. 1235. A method of forming a TREM-contacted cell, tissue, or subject, comprising:

contacting the cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby forming a TREM-contacted cell, tissue, or subject. 1236. A method of using a TREM comprising,

contacting a cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby using the TREM. 1237. A method of applying a TREM to a cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby applying a TREM to a cell, tissue, or subject. 1238. A method of exposing a cell, tissue, or subject to a TREM, comprising

contacting the cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby exposing a cell, tissue, or subject to a TREM. 1239. A method of forming an admixture of a TREM, and a cell, tissue, or subject, comprising

contacting the cell, tissue or subject with a TREM or TREM fragment of any of embodiments 1000-1213,

thereby forming an admixture of a TREM and a cell, tissue, or subject. 1240. A method of delivering a TREM to a cell, tissue, or subject, comprising:

providing a cell, tissue, or subject, and contacting the cell, tissue, or subject, a TREM or TREM fragment of any of embodiments 1000-1213.

1241. A method, e.g., an ex vivo method, of modulating the metabolism, e.g., the translational capacity of an organelle, comprising:

providing a preparation of an organelle, e.g., mitochondria or chloroplasts, and contacting the organelle with a TREM or TREM fragment of any of embodiments 1000-1213.

1242. A method of treating a subject, e.g., modulating the metabolism, e.g., the translational capacity of a cell, in a subject, comprising:

providing, e.g., administering to the subject a TREM or TREM fragment of any of embodiments 1000-1213,

thereby treating the subject.

1243. A method of modulating a tRNA pool in a cell comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the cell, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the cell;

contacting the cell with a TREM or TREM fragment of any of embodiments 1000-1213, wherein the TREM has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the cell,

thereby modulating the tRNA pool in the cell.

1244. A method of modulating a tRNA pool in a subject having an endogenous open reading frame (ORF), which ORF comprises a codon having a first sequence, comprising:

optionally, acquiring knowledge of the abundance of one or both of (i) and (ii), e.g., acquiring knowledge of the relative amounts of: (i) and (ii) in the subject, wherein (i) is a tRNA moiety having an anticodon that pairs with the codon of the ORF having a first sequence (the first tRNA moiety) and (ii) is an isoacceptor tRNA moiety having an anticodon that pairs with a codon other than the codon having the first sequence (the second tRNA moiety) in the subject;

contacting the subject with a TREM or TREM fragment of any of embodiments 1000-1213, wherein the TREM has an anticodon that pairs with: the codon having the first sequence; or the codon other than the codon having the first sequence, in an amount and/or for a time sufficient to modulate the relative amounts of the first tRNA moiety and the second tRNA moiety in the subject,

thereby modulating the tRNA pool in the subject.

1245. A method of modulating a tRNA pool in a subject having an endogenous open reading frame (ORF) comprising a codon comprising a synonymous mutation (a synonymous mutation codon or SMC), comprising:

providing a composition comprising a TREM or TREM fragment of any of embodiments 1000-1213, wherein the TREM comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the subject with the composition in an amount and/or for a time sufficient to modulate the tRNA pool in the subject,

thereby modulating the tRNA pool in the subject.

1246. A method of modulating a tRNA pool in a cell comprising an endogenous open reading frame (ORF) comprising a codon comprising a synonymous mutation (a synonymous mutation codon or SMC), comprising:

providing a composition comprising a TREM or TREM fragment of any of embodiments 1000-1213, wherein the TREM comprises an isoacceptor tRNA moiety comprising an anticodon sequence that pairs with the SMC (the TREM);

contacting the cell with the composition comprising a TREM in an amount and/or for a time sufficient to modulate the tRNA pool in the cell,

thereby modulating the tRNA pool in the cell.

1247. A method of modulating expression of a protein in a cell, wherein the protein is encoded by a nucleic acid comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a mutation, comprising:

contacting the cell with a composition comprising a TREM or TREM fragment of any of embodiments 1000-1213, in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the cell.

1248. A method of modulating expression of a protein in a subject, wherein the protein is encoded by a nucleic acid comprising an endogenous open reading frame (ORF), which ORF comprises a codon having a mutation, comprising:

contacting the subject with a composition comprising a TREM or TREM fragment of any of embodiments 1000-1213, in an amount and/or for a time sufficient to modulate expression of the encoded protein,

wherein the TREM has an anticodon that pairs with the codon having the mutation,

thereby modulating expression of the protein in the subject.

1249. The method of embodiment 1247 or 1248, wherein the mutation in the ORF is a nonsense mutation, e.g., resulting in a premature stop codon chosen from UAA, UGA or UAG. 1250. The method of embodiment 1247 or 1248, wherein the TREM comprises an anticodon that pairs with a stop codon.

Other features, objects, and advantages of the invention will be apparent from the description and from the claims.

Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.

DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS

The present disclosure features tRNA-based effector molecules (TREMs) comprising a non-naturally occurring modification and methods relating thereto. As disclosed herein, TREMs are complex molecules which can mediate a variety of cellular processes. Pharmaceutical TREM compositions, e.g., TREMs comprising a non-naturally occurring modification, can be administered to a cell, a tissue, or to a subject to modulate these functions.

Definitions

A “nucleotide,” as that term is used herein, refers to an entity comprising a sugar, typically a pentameric sugar; a nucleobase; and a phosphate linking group. In an embodiment, a nucleotide comprises a naturally occurring, e.g., naturally occurring in a human cell, nucleotide, e.g., an adenine, thymine, guanine, cytosine, or uracil nucleotide.

A “modification,” as that term is used herein with reference to a nucleotide, refers to a modification of the chemical structure, e.g., a covalent modification, of the subject nucleotide. The modification can be naturally occurring or non-naturally occurring. In an embodiment, the modification is non-naturally occurring. In an embodiment, the modification is naturally occurring. In an embodiment, the modification is a synthetic modification. In an embodiment, the modification is a modification provided in Tables 5, 6, 7, 8 or 9.

A “non-naturally occurring modification,” as that term is used herein with reference to a nucleotide, refers to a modification that: (a) a cell, e.g., a human cell, does not make on an endogenous tRNA; or (b) a cell, e.g., a human cell, can make on an endogenous tRNA but wherein such modification is in a location in which it does not occur on a native tRNA, e.g., the modification is in a domain, linker or arm, or on a nucleotide and/or at a position within a domain, linker or arm, which does not have such modification in nature. In either case, the modification is added synthetically, e.g., in a cell free reaction, e.g., in a solid state or liquid phase synthetic reaction. In an embodiment, the non-naturally occurring modification is a modification that is not present (in identity, location or position) if a sequence of the TREM is expressed in a mammalian cell, e.g., a HEK293 cell line. Exemplary non-naturally occurring modifications are found in Tables 5, 6, 7, 8 or 9.

A “non-naturally modified nucleotide,” as that term is used herein, refers a nucleotide comprising a non-naturally occurring modification on or of a sugar, nucleobase, or phosphate moiety.

A “naturally occurring nucleotide,” as that term is used herein, refers to a nucleotide that does not comprise a non-naturally occurring modification. In an embodiment, it includes a naturally occurring modification.

A “tRNA-based effector molecule” or “TREM,” as that term is used herein, refers to an RNA molecule comprising a structure or property from (a)-(v) below, and which is a recombinant TREM, a synthetic TREM, or a TREM expressed from a heterologous cell. The TREMs described in the present invention are synthetic molecules and are made, e.g., in a cell free reaction, e.g., in a solid state or liquid phase synthetic reaction. TREMs are chemically distinct, e.g., in terms of primary sequence, type or location of modifications from the endogenous tRNA molecules made in cells, e.g., in mammalian cells, e.g., in human cells. A TREM can have a plurality (e.g., 2, 3, 4, 5, 6, 7, 8, 9) of the structures and functions of (a)-(v).

In an embodiment, a TREM is non-native, as evaluated by structure or the way in which it was made.

In an embodiment, a TREM comprises one or more of the following structures or properties:

(a′) an optional linker region of a consensus sequence provided in the “Consensus Sequence” section, e.g., a Linker 1 region;

(a) an amino acid attachment domain that binds an amino acid, e.g., an acceptor stem domain (AStD), wherein an AStD comprises sufficient RNA sequence to mediate, e.g., when present in an otherwise wildtype tRNA, acceptance of an amino acid, e.g., its cognate amino acid or a non-cognate amino acid, and transfer of the amino acid (AA) in the initiation or elongation of a polypeptide chain. Typically, the AStD comprises a 3′-end adenosine (CCA) for acceptor stem charging which is part of synthetase recognition. In an embodiment the AStD has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring AStD, e.g., an AStD encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of an AStD, e.g., an AStD encoded by a nucleic acid in Table 1, which fragment in embodiments has AStD activity and in other embodiments does not have AStD activity. (One of ordinary skill can determine the relevant corresponding sequence for any of the domains, stems, loops, or other sequence features mentioned herein from a sequence encoded by a nucleic acid in Table 1. E.g., one of ordinary skill can determine the sequence which corresponds to an AStD from a tRNA sequence encoded by a nucleic acid in Table 1.)

In an embodiment the AStD falls under the corresponding sequence of a consensus sequence provided in the “Consensus Sequence” section, or differs from the consensus sequence by no more than 1, 2, 5, or 10 positions;

In an embodiment, the AStD comprises residues R₁-R₂-R₃-R₄-R₅-R₆-R₇ and residues R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁ of Formula I_(ZZZ), wherein ZZZ indicates any of the twenty amino acids; In an embodiment, the AStD comprises residues R₁-R₂-R₃-R₄-R₅-R₆-R₇ and residues R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁ of Formula II_(ZZZ), wherein ZZZ indicates any of the twenty amino acids; In an embodiment, the AStD comprises residues R₁-R₂-R₃-R₄-R₅-R₆-R₇ and residues R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁ of Formula III_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

(a′-1) a linker comprising residues R₈-R₉ of a consensus sequence provided in the “Consensus Sequence” section, e.g., a Linker 2 region;

(b) a dihydrouridine hairpin domain (DHD), wherein a DHD comprises sufficient RNA sequence to mediate, e.g., when present in an otherwise wildtype tRNA, recognition of aminoacyl-tRNA synthetase, e.g., acts as a recognition site for aminoacyl-tRNA synthetase for amino acid charging of the TREM. In embodiments, a DHD mediates the stabilization of the TREM's tertiary structure. In an embodiment the DHD has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring DHD, e.g., a DHD encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of a DHD, e.g., a DHD encoded by a nucleic acid in Table 1, which fragment in embodiments has DHD activity and in other embodiments does not have DHD activity.

In an embodiment the DHD falls under the corresponding sequence of a consensus sequence provided in the “Consensus Sequence” section, or differs from the consensus sequence by no more than 1, 2, 5, or 10 positions;

In an embodiment, the DHD comprises residues R₁₀-R₁₁-R₁₂-R₁₃-R₁₄ R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈ of Formula I_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the DHD comprises residues R₁₀-R₁₁-R₁₂-R₁₃-R₁₄ R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈ of Formula II_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the DHD comprises residues R₁₀-R₁₁-R₁₂-R₁₃-R₁₄ R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈ of Formula III_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

(b′-1) a linker comprising residue R₂₉ of a consensus sequence provided in the “Consensus Sequence” section, e.g., a Linker 3 region;

(c) an anticodon that binds a respective codon in an mRNA, e.g., an anticodon hairpin domain (ACHD), wherein an ACHD comprises sufficient sequence, e.g., an anticodon triplet, to mediate, e.g., when present in an otherwise wildtype tRNA, pairing (with or without wobble) with a codon; In an embodiment the ACHD has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring ACHD, e.g., an ACHD encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of an ACHD, e.g., an ACHD encoded by a nucleic acid in Table 1, which fragment in embodiments has ACHD activity and in other embodiments does not have ACHD activity.

In an embodiment the ACHD falls under the corresponding sequence of a consensus sequence provided in the “Consensus Sequence” section, or differs from the consensus sequence by no more than 1, 2, 5, or 10 positions;

In an embodiment, the ACHD comprises residues -R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆ of Formula I_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the ACHD comprises residues -R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄-R₄₆ of Formula II_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the ACHD comprises residues -R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄-R₄₆ of Formula III_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

(d) a variable loop domain (VLD), wherein a VLD comprises sufficient RNA sequence to mediate, e.g., when present in an otherwise wildtype tRNA, recognition of aminoacyl-tRNA synthetase, e.g., acts as a recognition site for aminoacyl-tRNA synthetase for amino acid charging of the TREM. In embodiments, a VLD mediates the stabilization of the TREM's tertiary structure. In an embodiment, a VLD modulates, e.g., increases, the specificity of the TREM, e.g., for its cognate amino acid, e.g., the VLD modulates the TREM's cognate adaptor function. In an embodiment the VLD has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring VLD, e.g., a VLD encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of a VLD, e.g., a VLD encoded by a nucleic acid in Table 1, which fragment in embodiments has VLD activity and in other embodiments does not have VLD activity.

In an embodiment the VLD falls under the corresponding sequence of a consensus sequence provided in the “Consensus Sequence” section.

In an embodiment, the VLD comprises residue -[R₄₇]_(x) of a consensus sequence provided in the “Consensus Sequence” section, wherein x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271);

(e) a thymine hairpin domain (THD), wherein a THD comprises sufficient RNA sequence, to mediate, e.g., when present in an otherwise wildtype tRNA, recognition of the ribosome, e.g., acts as a recognition site for the ribosome to form a TREM-ribosome complex during translation. In an embodiment the THD has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring THD, e.g., a THD encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of a THD, e.g., a THD encoded by a nucleic acid in Table 1, which fragment in embodiments has THD activity and in other embodiments does not have THD activity.

In an embodiment the THD falls under the corresponding sequence of a consensus sequence provided in the “Consensus Sequence” section, or differs from the consensus sequence by no more than 1, 2, 5, or 10 positions;

In an embodiment, the THD comprises residues -R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄ of Formula I_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the THD comprises residues -R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄ of Formula II_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

In an embodiment, the THD comprises residues -R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄ of Formula III_(ZZZ), wherein ZZZ indicates any of the twenty amino acids;

(e′ 1) a linker comprising residue R₇₂ of a consensus sequence provided in the “Consensus Sequence” section, e.g., a Linker 4 region;

(f) under physiological conditions, it comprises a stem structure and one or a plurality of loop structures, e.g., 1, 2, or 3 loops. A loop can comprise a domain described herein, e.g., a domain selected from (a)-(e). A loop can comprise one or a plurality of domains. In an embodiment, a stem or loop structure has at least 75, 80, 85, 85, 90, 95, or 100% identity with a naturally occurring stem or loop structure, e.g., a stem or loop structure encoded by a nucleic acid in Table 1. In an embodiment, the TREM can comprise a fragment or analog of a stem or loop structure, e.g., a stem or loop structure encoded by a nucleic acid in Table 1, which fragment in embodiments has activity of a stem or loop structure, and in other embodiments does not have activity of a stem or loop structure;

(g) a tertiary structure, e.g., an L-shaped tertiary structure;

(h) adaptor function, i.e., the TREM mediates acceptance of an amino acid, e.g., its cognate amino acid and transfer of the AA in the initiation or elongation of a polypeptide chain;

(i) cognate adaptor function wherein the TREM mediates acceptance and incorporation of an amino acid (e.g., cognate amino acid) associated in nature with the anti-codon of the TREM to initiate or elongate a polypeptide chain;

(j) non-cognate adaptor function, wherein the TREM mediates acceptance and incorporation of an amino acid (e.g., non-cognate amino acid) other than the amino acid associated in nature with the anti-codon of the TREM in the initiation or elongation of a polypeptide chain;

(k) a regulatory function, e.g., an epigenetic function (e.g., gene silencing function or signaling pathway modulation function), cell fate modulation function, mRNA stability modulation function, protein stability modulation function, protein transduction modulation function, or protein compartmentalization function;

(l) a structure which allows for ribosome binding;

(m) a post-transcriptional modification, e.g., a naturally occurring post-trasncriptional modification;

(n) the ability to inhibit a functional property of a tRNA, e.g., any of properties (h)-(k) possessed by a tRNA;

(o) the ability to modulate cell fate;

(p) the ability to modulate ribosome occupancy;

(q) the ability to modulate protein translation;

(r) the ability to modulate mRNA stability;

(s) the ability to modulate protein folding and structure;

(t) the ability to modulate protein transduction or compartmentalization;

(u) the ability to modulate protein stability; or

(v) the ability to modulate a signaling pathway, e.g., a cellular signaling pathway.

In an embodiment, a TREM comprises a full-length tRNA molecule or a fragment thereof.

In an embodiment, a TREM comprises the following properties: (a)-(e).

In an embodiment, a TREM comprises the following properties: (a) and (c).

In an embodiment, a TREM comprises the following properties: (a), (c) and (h).

In an embodiment, a TREM comprises the following properties: (a), (c), (h) and (b).

In an embodiment, a TREM comprises the following properties: (a), (c), (h) and (e).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (b) and (e).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (b), (e) and (g).

In an embodiment, a TREM comprises the following properties: (a), (c), (h) and (m).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (m), and (g).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (m) and (b).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (m) and (e).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (m), (g), (b) and (e).

In an embodiment, a TREM comprises the following properties: (a), (c), (h), (m), (g), (b), (e) and (q).

In an embodiment, a TREM comprises:

(i) an amino acid attachment domain that binds an amino acid (e.g., an AStD, as described in (a) herein; and

(ii) an anticodon that binds a respective codon in an mRNA (e.g., an ACHD, as described in (c) herein).

In an embodiment the TREM comprises a flexible RNA linker which provides for covalent linkage of (i) to (ii).

In an embodiment, the TREM mediates protein translation.

In an embodiment a TREM comprises a linker, e.g., an RNA linker, e.g., a flexible RNA linker, which provides for covalent linkage between a first and a second structure or domain. In an embodiment, an RNA linker comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 ribonucleotides. A TREM can comprise one or a plurality of linkers, e.g., in embodiments a TREM comprising (a), (b), (c), (d) and (e) can have a first linker between a first and second domain, and a second linker between a third domain and another domain.

In an embodiment, the TREM comprises a sequence of Formula A: [L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2].

In an embodiment, a TREM comprises an RNA sequence at least 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98 or 99% identical with, or which differs by no more than 1, 2, 3, 4, 5, 10, 15, 20, 25, or 30 ribonucleotides from, an RNA sequence encoded by a DNA sequence listed in Table 1, or a fragment or functional fragment thereof. In an embodiment, a TREM comprises an RNA sequence encoded by a DNA sequence listed in Table 1, or a fragment or functional fragment thereof. In an embodiment, a TREM comprises an RNA sequence encoded by a DNA sequence at least 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98 or 99% identical with a DNA sequence listed in Table 1, or a fragment or functional fragment thereof. In an embodiment, a TREM comprises a TREM domain, e.g., a domain described herein, comprising at least 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98, or 99% identical with, or which differs by no more than 1, 2, 3, 4, 5, 10, or 15, ribonucleotides from, an RNA encoded by a DNA sequence listed in Table 1, or a fragment or a functional fragment thereof. In an embodiment, a TREM comprises a TREM domain, e.g., a domain described herein, comprising an RNA sequence encoded by DNA sequence listed in Table 1, or a fragment or functional fragment thereof. In an embodiment, a TREM comprises a TREM domain, e.g., a domain described herein, comprising an RNA sequence encoded by DNA sequence at least 60, 65, 70, 75, 80, 85, 90, 95, 96, 97, 98 or 99% identical with a DNA sequence listed in Table 1, or a fragment or functional fragment thereof.

In an embodiment, a TREM is 76-90 nucleotides in length. In embodiments, a TREM or a fragment or functional fragment thereof is between 10-90 nucleotides, between 10-80 nucleotides, between 10-70 nucleotides, between 10-60 nucleotides, between 10-50 nucleotides, between 10-40 nucleotides, between 10-30 nucleotides, between 10-20 nucleotides, between 20-90 nucleotides, between 20-80 nucleotides, 20-70 nucleotides, between 20-60 nucleotides, between 20-50 nucleotides, between 20-40 nucleotides, between 30-90 nucleotides, between 30-80 nucleotides, between 30-70 nucleotides, between 30-60 nucleotides, or between 30-50 nucleotides.

In an embodiment, a TREM is aminoacylated, e.g., charged, with an amino acid by an aminoacyl tRNA synthetase.

In an embodiment, a TREM is not charged with an amino acid, e.g., an uncharged TREM (uTREM).

In an embodiment, a TREM comprises less than a full length tRNA. In embodiments, a TREM can correspond to a naturally occurring fragment of a tRNA, or to a non-naturally occurring fragment. Exemplary fragments include: TREM halves (e.g., from a cleavage in the ACHD, e.g., in the anticodon sequence, e.g., 5′ halves or 3′ halves); a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g., from a cleavage in a DHD or the ACHD); a 3′ fragment (e.g., a fragment comprising the 3′ end, e.g., from a cleavage in the THD); or an internal fragment (e.g., from a cleavage in one or more of the ACHD, DHD or THD).

A “TREM core fragment,” as that term is used herein, refers to a portion of the sequence of Formula B: [L1]_(y)-[ASt Domain1]_(x)-[L2]_(y)-[DH Domain]_(y)-[L3]_(y)-[ACH Domain]_(x)-[VL Domain]_(y)-[TH Domain]_(y)-[L4]_(y)-[ASt Domain2]_(x), wherein: x=1 and y=0 or 1.

A “TREM fragment,” as used herein, refers to a portion of a TREM, wherein the TREM comprises a sequence of Formula A: [L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2].

A “cognate adaptor function TREM,” as that term is used herein, refers to a TREM which mediates initiation or elongation with the AA (the cognate AA) associated in nature with the anti-codon of the TREM.

“Decreased expression,” as that term is used herein, refers to a decrease in comparison to a reference, e.g., in the case where altered control region, or addition of an agent, results in a decreased expression of the subject product, it is decreased relative to an otherwise similar cell without the alteration or addition.

An “exogenous nucleic acid,” as that term is used herein, refers to a nucleic acid sequence that is not present in or differs by at least one nucleotide from the closest sequence in a reference cell, e.g., a cell into which the exogenous nucleic acid is introduced. In an embodiment, an exogenous nucleic acid comprises a nucleic acid that encodes a TREM.

An “exogenous TREM,” as that term is used herein, refers to a TREM that:

(a) differs by at least one nucleotide or one post transcriptional modification from the closest sequence tRNA in a reference cell, e.g., a cell into which the exogenous nucleic acid is introduced;

(b) has been introduced into a cell other than the cell in which it was transcribed;

(c) is present in a cell other than one in which it naturally occurs; or

(d) has an expression profile, e.g., level or distribution, that is non-wildtype, e.g., it is expressed at a higher level than wildtype. In an embodiment, the expression profile can be mediated by a change introduced into a nucleic acid that modulates expression or by addition of an agent that modulates expression of the RNA molecule. In an embodiment an exogenous TREM comprises 1, 2, 3 or 4 of properties (a)-(d).

A “GMP-grade composition,” as that term is used herein, refers to a composition in compliance with current good manufacturing practice (cGMP) guidelines, or other similar requirements. In an embodiment, a GMP-grade composition can be used as a pharmaceutical product.

As used herein, the terms “increasing” and “decreasing” refer to modulating that results in, respectively, greater or lesser amounts of function, expression, or activity of a particular metric relative to a reference. For example, subsequent to administration to a cell, tissue or subject of a TREM described herein, the amount of a marker of a metric (e.g., protein translation, mRNA stability, protein folding) as described herein may be increased or decreased by at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or 98%, 2×, 3×, 5×, 10× or more relative to the amount of the marker prior to administration or relative to the effect of a negative control agent. The metric may be measured subsequent to administration at a time that the administration has had the recited effect, e.g., at least 12 hours, 24 hours, one week, one month, 3 months, or 6 months, after a treatment has begun.

“Increased expression,” as that term is used herein, refers to an increase in comparison to a reference, e.g., in the case where altered control region, or addition of an agent, results in an increased expression of the subject product, it is increased relative to an otherwise similar cell without the alteration or addition.

A “non-cognate adaptor function TREM,” as that term is used herein, refers to a TREM which mediates initiation or elongation with an AA (a non-cognate AA) other than the AA associated in nature with the anti-codon of the TREM. In an embodiment, a non-cognate adaptor function TREM is also referred to as a mischarged TREM (mTREM).

A “non-naturally occurring sequence,” as that term is used herein, refers to a sequence wherein an Adenine is replaced by a residue other than an analog of Adenine, a Cytosine is replaced by a residue other than an analog of Cytosine, a Guanine is replaced by a residue other than an analog of Guanine, and a Uracil is replaced by a residue other than an analog of Uracil. An analog refers to any possible derivative of the ribonucleotides, A, G, C or U. In an embodiment, a sequence having a derivative of any one of ribonucleotides A, G, C or U is a non-naturally occurring sequence.

A “pharmaceutical TREM composition,” as that term is used herein, refers to a TREM composition that is suitable for pharmaceutical use. Typically, a pharmaceutical TREM composition comprises a pharmaceutical excipient. In an embodiment the TREM will be the only active ingredient in the pharmaceutical TREM composition. In embodiments the pharmaceutical TREM composition is free, substantially free, or has less than a pharmaceutically acceptable amount, of host cell proteins, DNA, e.g., host cell DNA, endotoxins, and bacteria.

A “post-transcriptional processing,” as that term is used herein, with respect to a subject molecule, e.g., a TREM, RNA or tRNAs, refers to a covalent modification of the subject molecule. In an embodiment, the covalent modification occurs post-transcriptionally. In an embodiment, the covalent modification occurs co-transcriptionally. In an embodiment the modification is made in vivo, e.g., in a cell used to produce a TREM. In an embodiment the modification is made ex vivo, e.g., it is made on a TREM isolated or obtained from the cell which produced the TREM. In an embodiment, the post-transcriptional modification is selected from a post-transcriptional modification listed in Table 2.

A “synthetic TREM,” as that term is used herein, refers to a TREM which was synthesized other than in or by a cell having an endogenous nucleic acid encoding the TREM, e.g., a synthetic TREM is synthetized by cell-free solid phase synthesis. A synthetic TREM can have the same, or a different, sequence, or tertiary structure, as a native tRNA.

A “recombinant TREM,” as that term is used herein, refers to a TREM that was expressed in a cell modified by human intervention, having a modification that mediates the production of the TREM, e.g., the cell comprises an exogenous sequence encoding the TREM, or a modification that mediates expression, e.g., transcriptional expression or post-transcriptional modification, of the TREM. A recombinant TREM can have the same, or a different, sequence, set of post-transcriptional modifications, or tertiary structure, as a reference tRNA, e.g., a native tRNA.

A “tRNA”, as that term is used herein, refers to a naturally occurring transfer ribonucleic acid in its native state.

A “TREM composition,” as that term is used herein, refers to a composition comprising a plurality of TREMs, a plurality of TREM core fragments and/or a plurality of TREM fragments. A TREM composition can comprise one or more species of TREMs, TREM core fragments or TREM fragments. In an embodiment, the composition comprises only a single species of TREM, TREM core fragment or TREM fragment. In an embodiment, the TREM composition comprises a first TREM, TREM core fragment or TREM fragment species; and a second TREM, TREM core fragment or TREM fragment species. In an embodiment, the TREM composition comprises X TREM, TREM core fragment or TREM fragment species, wherein X=2, 3, 4, 5, 6, 7, 8, 9, or 10. In an embodiment, the TREM, TREM core fragment or TREM fragment has at least 70, 75, 80, 85, 90, or 95, or has 100%, identity with a sequence encoded by a nucleic acid in Table 1. A TREM composition can comprise one or more species of TREMs, TREM core fragments or TREM fragments. In an embodiment, the TREM composition is at least 10, 20, 30, 40, 50, 60, 70, 80, 90, 95 or 99% dry weight TREMs (for a liquid composition dry weight refers to the weight after removal of substantially all liquid, e.g., after lyophilization). In an embodiment, the composition is a liquid. In an embodiment, the composition is dry, e.g., a lyophilized material. In an embodiment, the composition is a frozen composition. In an embodiment, the composition is sterile. In an embodiment, the composition comprises at least 0.5 g, 1.0 g, 5.0 g, 10 g, 15 g, 25 g, 50 g, 100 g, 200 g, 400 g, or 500 g (e.g., as determined by dry weight) of TREM.

In an embodiment, at least X % of the TREMs in a TREM composition has a non-naturally occurring modification at a selected position, and X is 80, 90, 95, 96, 97, 98, 99, or 99.5.

In an embodiment, at least X % of the TREMs in a TREM composition has a non-naturally occurring modification at a first position and a non-naturally occurring modification at a second position, and X, independently, is 80, 90, 95, 96, 97, 98, 99, or 99.5. In embodiments, the modification at the first and second position is the same. In embodiments, the modification at the first and second position are different. In embodiments, the nucleotide at the first and second position is the same, e.g., both are adenine. In embodiments, the nucleotide at the first and second position are different, e.g., one is adenine and one is thymine.

In an embodiment, at least X % of the TREMs in a TREM composition has a non-naturally occurring modification at a first position and less than Y % have a non-naturally occurring modification at a second position, wherein X is 80, 90, 95, 96, 97, 98, 99, or 99.5 and Y is 20, 20, 5, 2, 1, 0.1, or 0.01. In embodiments, the nucleotide at the first and second position is the same, e.g., both are adenine. In embodiments the nucleotide at the first and second position are different, e.g., one is adenine and one is thymine.

TREM, TREM Core Fragment and TREM Fragment

A “tRNA-based effector molecule” or “TREM” refers to an RNA molecule comprising one or more of the properties described herein. A TREM can comprise a non-naturally occurring modification, e.g., as provided in Tables 4, 5, 6 or 7.

In an embodiment, a TREM includes a TREM comprising a sequence of Formula A; a TREM core fragment comprising a sequence of Formula B; or a TREM fragment comprising a portion of a TREM which TREM comprises a sequence of Formula A.

In an embodiment, a TREM comprises a sequence of Formula A: [L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2]. In an embodiment, [VL Domain] is optional. In an embodiment, [L1] is optional.

In an embodiment, a TREM core fragment comprises a sequence of Formula B: [L1]_(y)-[ASt Domain1]_(x)-[L2]_(y)-[DH Domain]_(y)-[L3]_(y)-[ACH Domain]_(x)-[VL Domain]_(y)-[TH Domain]_(y)-[L4]_(y)-[ASt Domain2]_(x), wherein: x=1 and y=0 or 1. In an embodiment, y=0. In an embodiment, y=1.

In an embodiment, a TREM fragment comprises a portion of a TREM, wherein the TREM comprises a sequence of Formula A: [L1]-[ASt Domain1]-[L2]-[DH Domain]-[L3]-[ACH Domain]-[VL Domain]-[TH Domain]-[L4]-[ASt Domain2], and wherein the TREM fragment comprises: one, two, three or all or any combination of the following: a TREM half (e.g., from a cleavage in the ACH Domain, e.g., in the anticodon sequence, e.g., a 5′ half or a 3′ half); a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g., from a cleavage in a DH Domain or the ACH Domain); a 3′ fragment (e.g., a fragment comprising the 3′ end, e.g., from a cleavage in the TH Domain); or an internal fragment (e.g., from a cleavage in any one of the ACH Domain, DH Domain or TH Domain). Exemplary TREM fragments include TREM halves (e.g., from a cleavage in the ACHD, e.g., 5′TREM halves or 3′ TREM halves), a 5′ fragment (e.g., a fragment comprising the 5′ end, e.g., from a cleavage in a DHD or the ACHD), a 3′ fragment (e.g., a fragment comprising the 3′ end of a TREM, e.g., from a cleavage in the THD), or an internal fragment (e.g., from a cleavage in one or more of the ACHD, DHD or THD).

In an embodiment, a TREM, a TREM core fragment or a TREM fragment can be charged with an amino acid (e.g., a cognate amino acid); charged with a non-cognate amino acid (e.g., a mischarged TREM (mTREM)); or not charged with an amino acid (e.g., an uncharged TREM (uTREM)). In an embodiment, a TREM, a TREM core fragment or a TREM fragment can be charged with an amino acid selected from alanine, arginine, asparagine, aspartate, cysteine, glutamine, glutamate, glycine, histidine, isoleucine, methionine, leucine, lysine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, or valine.

In some embodiments, a non-extended anticodon is an anticodon of no more than three nucleotides. In an embodiment, a non-extended codon pairs with no more than three codon nucleotides on a nucleic acid being translated.

In an embodiment, the TREM, TREM core fragment or TREM fragment is a cognate TREM. In an embodiment, the TREM, TREM core fragment or TREM fragment is a non-cognate TREM. In an embodiment, the TREM, TREM core fragment or TREM fragment recognizes a codon provided in Table 2 or Table 3.

TABLE 2 List of codons AAA AAC AAG AAU ACA ACC ACG ACU AGA AGC AGG AGU AUA AUC AUG AUU CAA CAC CAG CAU CCA CCC CCG CCU CGA CGC CGG CGU CUA CUC CUG CUU GAA GAC GAG GAU GCA GCC GCG GCU GGA GGC GGG GGU GUA GUC GUG GUU UAA UAC UAG UAU UCA UCC UCG UCU UGA UGC UGG UGU UUA UUC UUG UUU

TABLE 3 Amino acids and corresponding codons Amino Acid mRNA codons Alanine GCU, GCC, GCA, GCG Arginine CGU, CGC, CGA, CGG, AGA, AGG Asparagine AAU, AAC Aspartate GAU, GAC Cysteine UGU, UGC Glutamate GAA, GAG Glutamine CAA, CAG Glycine GGU, GGC, GGA, GGG Histidine CAU, CAC Isoleucine AUU, AUC, AUA Leucine UUA, UUG, CUU, CUC, CUA, CUG Lysine AAA, AAG Methionine AUG Phenylalanine UUU, UUC Proline CCU, CCC, CCA, CCG Serine UCU, UCC, UCA, UCG

Stop UAA, UAG, UGA Threonine ACU, ACC, ACA, ACG

Tryptophan UGG Tyrosine UAU, UAC Valine GUU, GUC, GUA, GUG

indicates data missing or illegible when filed

In an embodiment, a TREM comprises a ribonucleic acid (RNA) sequence encoded by a deoxyribonucleic acid (DNA) sequence disclosed in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM comprises an RNA sequence at least 60%, 65%, 70%, 75%, 80%, 82%, 85%, 87%, 88%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identical to an RNA sequence encoded by a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM comprises an RNA sequence encoded by a DNA sequence at least 60%, 65%, 70%, 75%, 80%, 82%, 85%, 87%, 88%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identical to a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1.

In an embodiment, a TREM, a TREM core fragment, or TREM fragment comprises at least 5, 10, 15, 20, 25, or 30 consecutive nucleotides of an RNA sequence encoded by a DNA sequence disclosed in Table 1, e.g., at least 5, 10, 15, 20, 25, or 30 consecutive nucleotides of an RNA sequence encoded by any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM, a TREM core fragment, or TREM fragment comprises at least 5, 10, 15, 20, 25, or 30 consecutive nucleotides of an RNA sequence at least 60%, 65%, 70%, 75%, 80%, 82%, 85%, 87%, 88%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identical to an RNA sequence encoded by a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM, a TREM core fragment, or TREM fragment comprises at least 5, 10, 15, 20, 25, or 30 consecutive nucleotides of an RNA sequence encoded by a DNA sequence at least 60%, 65%, 70%, 75%, 80%, 82%, 85%, 87%, 88%, 90%, 92%, 95%, 96%, 97%, 98%, or 99% identical to a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1.

In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% of an RNA sequence encoded by a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% of an RNA sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% identical to an RNA sequence encoded by a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% of an RNA sequence encoded by a DNA sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% identical to a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1.

In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5 ribonucleotides (nt), 10 nt, 15 nt, 20 nt, 25 nt, 30 nt, 35 nt, 40 nt, 45 nt, 50 nt, 55 nt or 60 nt (but less than the full length) of an RNA sequence encoded by a DNA sequence disclosed in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5 ribonucleotides (nt), 10 nt, 15 nt, 20 nt, 25 nt, 30 nt, 35 nt, 40 nt, 45 nt, 50 nt, 55 nt or 60 nt (but less than the full length) of an RNA sequence which is at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99% or 100% identical to an RNA sequence encoded by a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1. In an embodiment, a TREM core fragment or a TREM fragment comprises at least 5 ribonucleotides (nt), 10 nt, 15 nt, 20 nt, 25 nt, 30 nt, 35 nt, 40 nt, 45 nt, 50 nt, 55 nt or 60 nt (but less than the full length) of an RNA sequence encoded by a DNA sequence with at least 80%, 82%, 85%, 87%, 88%, 90%, 92%, 95%, 96%, 97%, 98%, 99% or 100% identity to a DNA sequence provided in Table 1, e.g., any one of SEQ ID NOs: 1-451 disclosed in Table 1.

In an embodiment, a TREM core fragment or a TREM fragment comprises a sequence of a length of between 10-90 ribonucleotides (rnt), between 10-80 rnt, between 10-70 rnt, between 10-60 rnt, between 10-50 rnt, between 10-40 rnt, between 10-30 rnt, between 10-20 rnt, between 20-90 rnt, between 20-80 rnt, 20-70 rnt, between 20-60 rnt, between 20-50 rnt, between 20-40 rnt, between 30-90 rnt, between 30-80 rnt, between 30-70 rnt, between 30-60 rnt, or between 30-50 rnt

TABLE 1 List of tRNA Sequences SEQ ID NO tRNA name tRNA sequence 1 Ala_AGC_chr6:28763 GGGGGTATAGCTCAGTGGTAGAGCGCGTGCT 741-28763812 (-) TAGCATGCACGAGGTCCTGGGTTCGATCCCC 2 Ala_AGC_chr6:26687 GGGGAATTAGCTCAAGTGGTAGAGCGCTTGC 485-26687557 (+) TTAGCACGCAAGAGGTAGTGGGATCGATGCC 3 Ala_AGC_chr6:26572 GGGGAATTAGCTCAAATGGTAGAGCGCTCGC 092-26572164 (-) TTAGCATGCGAGAGGTAGCGGGATCGATGCC 4 Ala_AGC_chr6:26682 GGGGAATTAGCTCAAGTGGTAGAGCGCTTGC 715-26682787 (+) TTAGCATGCAAGAGGTAGTGGGATCGATGCC 5 Ala_AGC_chr6:26705 GGGGAATTAGCTCAAGCGGTAGAGCGCTTGC 606-26705678 (+) TTAGCATGCAAGAGGTAGTGGGATCGATGCC 6 Ala_AGC_chr6:26673 GGGGAATTAGCTCAAGTGGTAGAGCGCTTGC 590-26673662 (+) TTAGCATGCAAGAGGTAGTGGGATCAATGCC 7 Ala_AGC_chr14:8944 GGGGAATTAGCTCAAGTGGTAGAGCGCTCGC 5442-89445514 (+) TTAGCATGCGAGAGGTAGTGGGATCGATGCC 8 Ala_AGC_chr6:58196 GGGGAATTAGCCCAAGTGGTAGAGCGCTTGC 623-58196695 (-) TTAGCATGCAAGAGGTAGTGGGATCGATGCC 9 Ala_AGC_chr6:28806 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 221-28806292 (-) TAGCATGCACGAGGCCCCGGGTTCAATCCCC 10 Ala_AGC_chr6:28574 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 933-28575004 (+) TAGCATGTACGAGGTCCCGGGTTCAATCCCC 11 Ala_AGC_chr6:28626 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 014-28626085 (-) TAGCATGCATGAGGTCCCGGGTTCGATCCCC 12 Ala_AGC_chr6:28678 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 366-28678437 (+) TAGCATGCACGAGGCCCTGGGTTCAATCCCC 13 Ala_AGC_chr6:28779 GGGGGTATAGCTCAGCGGTAGAGCGCGTGCT 849-28779920 (-) TAGCATGCACGAGGTCCTGGGTTCAATCCCC 14 Ala_AGC_chr6:28687 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 481-28687552 (+) TAGCATGCACGAGGCCCCGGGTTCAATCCCT 15 Ala_AGC_chr2:27274 GGGGGATTAGCTCAAATGGTAGAGCGCTCGC 082-27274154 (+) TTAGCATGCGAGAGGTAGCGGGATCGATGCC 16 Ala_AGC_chr6:26730 GGGGAATTAGCTCAGGCGGTAGAGCGCTCGC 737-26730809 (+) TTAGCATGCGAGAGGTAGCGGGATCGACGCC 17 Ala_CGC_chr6:26553 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 731-26553802 (+) TCGCATGTATGAGGTCCCGGGTTCGATCCCC 18 Ala_CGC_chr6:28641 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 613-28641684 (-) TCGCATGTATGAGGCCCCGGGTTCGATCCCC 19 Ala_CGC_chr2:15725 GGGGATGTAGCTCAGTGGTAGAGCGCGCGCT 7281-157257352 (+) TCGCATGTGTGAGGTCCCGGGTTCAATCCCC 20 Ala_CGC_chr6:28697 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 092-28697163 (+) TCGCATGTACGAGGCCCCGGGTTCGACCCCC 21 Ala_TGC_chr6:28757 GGGGGTGTAGCTCAGTGGTAGAGCGCATGCT 547-28757618 (-) TTGCATGTATGAGGTCCCGGGTTCGATCCCC 22 Ala_TGC_chr6:28611 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 222-28611293 (+) TTGCATGTATGAGGTCCCGGGTTCGATCCCC 23 Ala_TGC_chr5:18063 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 3868-180633939 (+) TTGCATGTATGAGGCCCCGGGTTCGATCCCC 24 Ala_TGC_chr12:1254 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 24512-125424583 (+) TTGCACGTATGAGGCCCCGGGTTCAATCCCC 25 Ala_TGC_chr6:28785 GGGGGTGTAGCTCAGTGGTAGAGCGCATGCT 012-28785083 (-) TTGCATGTATGAGGCCTCGGGTTCGATCCCC 26 Ala_TGC_chr6:28726 GGGGGTGTAGCTCAGTGGTAGAGCACATGCT 141-28726212 (-) TTGCATGTGTGAGGCCCCGGGTTCGATCCCC 27 Ala_TGC_chr6:28770 GGGGGTGTAGCTCAGTGGTAGAGCGCATGCT 577-28770647 (-) TTGCATGTATGAGGCCTCGGTTCGATCCCCG 28 Arg_ACG_chr6:26328 GGGCCAGTGGCGCAATGGATAACGCGTCTGA 368-26328440 (+) CTACGGATCAGAAGATTCCAGGTTCGACTCC 29 Arg_ACG_chr3:45730 GGGCCAGTGGCGCAATGGATAACGCGTCTGA 491-45730563 (-) CTACGGATCAGAAGATTCTAGGTTCGACTCC 30 Arg_CCG_chr6:28710 GGCCGCGTGGCCTAATGGATAAGGCGTCTGA 729-28710801 (-) TTCCGGATCAGAAGATTGAGGGTTCGAGTCC 31 Arg_CCG_chr17:6601 GACCCAGTGGCCTAATGGATAAGGCATCAGC 6013-66016085 (-) CTCCGGAGCTGGGGATTGTGGGTTCGAGTCC 32 Arg_CCT_chr17:7303 GCCCCAGTGGCCTAATGGATAAGGCACTGGC 0001-73030073 (+) CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 33 Arg_CCT_chr17:7303 GCCCCAGTGGCCTAATGGATAAGGCACTGGC 0526-73030598 (-) CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 34 Arg_CCT_chr16:3202 GCCCCGGTGGCCTAATGGATAAGGCATTGGC 901-3202973 (+) CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 35 Arg_CCT_chr7:13902 GCCCCAGTGGCCTAATGGATAAGGCATTGGC 5446-139025518 (+) CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 36 Arg_CCT_chr16:3243 GCCCCAGTGGCCTGATGGATAAGGTACTGGC 918-3243990 (+) CTCCTAAGCCAGGGATTGTGGGTTCGAGTTC 37 Arg_TCG_chr15:8987 GGCCGCGTGGCCTAATGGATAAGGCGTCTGA 8304-89878376 (+) CTTCGGATCAGAAGATTGCAGGTTCGAGTCC 38 Arg_TCG_chr6:26323 GACCACGTGGCCTAATGGATAAGGCGTCTGA 046-26323118 (+) CTTCGGATCAGAAGATTGAGGGTTCGAATCC 39 Arg_TCG_chr17:7303 GACCGCGTGGCCTAATGGATAAGGCGTCTGA 1208-73031280 (+) CTTCGGATCAGAAGATTGAGGGTTCGAGTCC 40 Arg_TCG_chr6:26299 GACCACGTGGCCTAATGGATAAGGCGTCTGA 905-26299977 (+) CTTCGGATCAGAAGATTGAGGGTTCGAATCC 41 Arg_TCG_chr6:28510 GACCACGTGGCCTAATGGATAAGGCGTCTGA 891-28510963 (-) CTTCGGATCAGAAGATTGAGGGTTCGAATCC 42 Arg_TCG_chr9:11296 GGCCGTGTGGCCTAATGGATAAGGCGTCTGA 0803-112960875 (+) CTTCGGATCAAAAGATTGCAGGTTTGAGTTC 43 Arg_TCT_chr1:94313 GGCTCCGTGGCGCAATGGATAGCGCATTGGA 129-94313213 (+) CTTCTAGAGGCTGAAGGCATTCAAAGGTTCC 44 Arg_TCT_chr17:8024 GGCTCTGTGGCGCAATGGATAGCGCATTGGA 243-8024330 (+) CTTCTAGTGACGAATAGAGCAATTCAAAGGT 45 Arg_TCT_chr9:13110 GGCTCTGTGGCGCAATGGATAGCGCATTGGA 2355-131102445 (-) CTTCTAGCTGAGCCTAGTGTGGTCATTCAAA 46 Arg_TCT_chr11:5931 GGCTCTGTGGCGCAATGGATAGCGCATTGGA 8767-59318852 (+) CTTCTAGATAGTTAGAGAAATTCAAAGGTTG 47 Arg_TCT_chr1:15911 GTCTCTGTGGCGCAATGGACGAGCGCGCTGG 1401-159111474 (-) ACTTCTAATCCAGAGGTTCCGGGTTCGAGTC 48 Arg_TCT_chr6:27529 GGCTCTGTGGCGCAATGGATAGCGCATTGGA 963-27530049 (+) CTTCTAGCCTAAATCAAGAGATTCAAAGGTT 49 Asn_GTT_chr1:16151 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 0031-161510104 (+) GCTGTTAACCGAAAGGTTGGTGGTTCGATCC 50 Asn_GTT_chr1:14387 GTCTCTGTGGCGCAATCGGCTAGCGCGTTTG 9832-143879905 (-) GCTGTTAACTAAAAGGTTGGCGGTTCGAACC 51 Asn_GTT_chr1:14430 GTCTCTGTGGTGCAATCGGTTAGCGCGTTCCG 1611-144301684 (+) CTGTTAACCGAAAGCTTGGTGGTTCGAGCCC 52 Asn_GTT_chr1:14932 GTCTCTGTGGCGCAATCGGCTAGCGCGTTTG 6272-149326345 (-) GCTGTTAACTAAAAAGTTGGTGGTTCGAACA 53 Asn_GTT_chr1:14824 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 8115-148248188 (+) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 54 Asn_GTT_chr1:14859 GTCTCTGTGGCGCAATCGGTTAGCGCATTCG 8314-148598387 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 55 Asn_GTT_chr1:17216 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 172-17216245 (+) GCTGTTAACCGAAAGATTGGTGGTTCGAGCC 56 Asn_GTT_chr1:16847 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 080-16847153 (-) GCTGTTAACTGAAAGGTTGGTGGTTCGAGCC 57 Asn_GTT_chr1:14923 GTCTCTGTGGCGCAATGGGTTAGCGCGTTCG 0570-149230643 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 58 Asn_GTT_chr1:14800 GTCTCTGTGGCGTAGTCGGTTAGCGCGTTCG 0805-148000878 (+) GCTGTTAACCGAAAAGTTGGTGGTTCGAGCC 59 Asn_GTT_chr1:14971 GTCTCTGTGGCGCAATCGGCTAGCGCGTTTG 1798-149711871 (-) GCTGTTAACTAAAAGGTTGGTGGTTCGAACC 60 Asn_GTT_chr1:14597 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 9034-145979107 (-) GCTGTTAACTGAAAGGTTAGTGGTTCGAGCC 61 Asp_GTC_chr12:9889 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCC 7281-98897352 (+) TGTCACGCGGGAGACCGGGGTTCAATTCCCC 62 Asp_GTC_chr1:16141 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCC 0615-161410686 (-) TGTCACGCGGGAGACCGGGGTTCGATTCCCC 63 Asp_GTC_chr6:27551 TCCTCGTTAGTATAGTGGTGAGTGTCCCCGTC 236-27551307 (-) TGTCACGCGGGAGACCGGGGTTCGATTCCCC 64 Cys_GCA_chr7:14900 GGGGGCATAGCTCAGTGGTAGAGCATTTGAC 7281-149007352 (+) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 65 Cys_GCA_chr7:14907 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 4601-149074672 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 66 Cys_GCA_chr7:14911 GGGGGTATAGCTTAGCGGTAGAGCATTTGAC 2229-149112300 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 67 Cys_GCA_chr7:14934 GGGGGTATAGCTTAGGGGTAGAGCATTTGAC 4046-149344117 (-) TGCAGATCAAAAGGTCCCTGGTTCAAATCCA 68 Cys_GCA_chr7:14905 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 2766-149052837 (-) TGCAGATCAAGAGGTCCCCAGTTCAAATCTG 69 Cys_GCA_chr17:3701 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 7937-37018008 (-) TGCAGATCAAGAAGTCCCCGGTTCAAATCCG 70 Cys_GCA_chr7:14928 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 1816-149281887 (+) TGCAGATCAAGAGGTCTCTGGTTCAAATCCA 71 Cys_GCA_chr7:14924 GGGGGTATAGCTCAGGGGTAGAGCACTTGAC 3631-149243702 (+) TGCAGATCAAGAAGTCCTTGGTTCAAATCCA 72 Cys_GCA_chr7:14938 GGGGATATAGCTCAGGGGTAGAGCATTTGAC 8272-149388343 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 73 Cys_GCA_chr7:14907 GGGGGTATAGTTCAGGGGTAGAGCATTTGAC 2850-149072921 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 74 Cys_GCA_chr7:14931 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 0156-149310227 (-) TGCAAATCAAGAGGTCCCTGATTCAAATCCA 75 Cys_GCA_chr4:12443 GGGGGTATAGCTCAGTGGTAGAGCATTTGAC 0005-124430076 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 76 Cys_GCA_chr7:14929 GGGCGTATAGCTCAGGGGTAGAGCATTTGAC 5046-149295117 (+) TGCAGATCAAGAGGTCCCCAGTTCAAATCTG 77 Cys_GCA_chr7:14936 GGGGGTATAGCTCACAGGTAGAGCATTTGAC 1915-149361986 (+) TGCAGATCAAGAGGTCCCCGGTTCAAATCTG 78 Cys_GCA_chr7:14925 GGGCGTATAGCTCAGGGGTAGAGCATTTGAC 3802-149253871 (+) TGCAGATCAAGAGGTCCCCAGTTCAAATCTG 79 Cys_GCA_chr7:14929 GGGGGTATAGCTCACAGGTAGAGCATTTGAC 2305-149292376 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 80 Cys_GCA_chr7:14928 GGGGGTATAGCTCAGGGGTAGAGCACTTGAC 6164-149286235 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 81 Cys_GCA_chr17:3702 GGGGGTATAGCTCAGTGGTAGAGCATTTGAC 5545-37025616 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCG 82 Cys_GCA_chr15:8003 GGGGGTATAGCTCAGTGGGTAGAGCATTTGA 6997-80037069 (+) CTGCAGATCAAGAGGTCCCCGGTTCAAATCC 83 Cys_GCA_chr3:13194 GGGGGTGTAGCTCAGTGGTAGAGCATTTGAC 7944-131948015 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 84 Cys_GCA_chr1:93981 GGGGGTATAGCTCAGGTGGTAGAGCATTTGA 834-93981906 (-) CTGCAGATCAAGAGGTCCCCGGTTCAAATCC 85 Cys_GCA_chr14:7342 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 9679-73429750 (+) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 86 Cys_GCA_chr3:13195 GGGGGTATAGCTCAGGGGTAGAGCATTTGAC 0642-131950713 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCA 87 Gln_CTG_chr6:18836 GGTTCCATGGTGTAATGGTTAGCACTCTGGA 402-18836473 (+) CTCTGAATCCAGCGATCCGAGTTCAAATCTC 88 Gln_CTG_chr6:27515 GGTTCCATGGTGTAATGGTTAGCACTCTGGA 531-27515602 (-) CTCTGAATCCAGCGATCCGAGTTCAAGTCTC 89 Gln_CTG_chr1:14596 GGTTCCATGGTGTAATGGTGAGCACTCTGGA 3304-145963375 (+) CTCTGAATCCAGCGATCCGAGTTCGAGTCTC 90 Gln_CTG_chr1:14773 GGTTCCATGGTGTAATGGTAAGCACTCTGGA 7382-147737453 (-) CTCTGAATCCAGCGATCCGAGTTCGAGTCTC 91 Gln_CTG_chr6:27263 GGTTCCATGGTGTAATGGTTAGCACTCTGGA 212-27263283 (+) CTCTGAATCCGGTAATCCGAGTTCAAATCTC 92 Gln_CTG_chr6:27759 GGCCCCATGGTGTAATGGTCAGCACTCTGGA 135-27759206 (-) CTCTGAATCCAGCGATCCGAGTTCAAATCTC 93 Gln_CTG_chr1:14780 GGTTCCATGGTGTAATGGTAAGCACTCTGGA 0937-147801008 (+) CTCTGAATCCAGCCATCTGAGTTCGAGTCTCT 94 Gln_TTG_chr17:4726 GGTCCCATGGTGTAATGGTTAGCACTCTGGA 9890-47269961 (+) CTTTGAATCCAGCGATCCGAGTTCAAATCTC 95 Gln_TTG_chr6:28557 GGTCCCATGGTGTAATGGTTAGCACTCTGGA 156-28557227 (+) CTTTGAATCCAGCAATCCGAGTTCGAATCTC 96 Gln_TTG_chr6:26311 GGCCCCATGGTGTAATGGTTAGCACTCTGGA 424-26311495 (-) CTTTGAATCCAGCGATCCGAGTTCAAATCTC 97 Gln_TTG_chr6:14550 GGTCCCATGGTGTAATGGTTAGCACTCTGGG 3859-145503930 (+) CTTTGAATCCAGCAATCCGAGTTCGAATCTTG 98 Glu_CTC_chr1:14539 TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 9233-145399304 (-) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 99 Glu_CTC_chr1:24916 TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 8447-249168518 (+) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 100 Glu_TTC_chr2:13109 TCCCATATGGTCTAGCGGTTAGGATTCCTGGT 4701-131094772 (-) TTTCACCCAGGTGGCCCGGGTTCGACTCCCG 101 Glu_TTC_chr13:4549 TCCCACATGGTCTAGCGGTTAGGATTCCTGGT 2062-45492133 (-) TTTCACCCAGGCGGCCCGGGTTCGACTCCCG 102 Glu_TTC_chr1:17199 TCCCTGGTGGTCTAGTGGCTAGGATTCGGCG 078-17199149 (+) CTTTCACCGCCGCGGCCCGGGTTCGATTCCCG 103 Glu_TTC_chr1:16861 TCCCTGGTGGTCTAGTGGCTAGGATTCGGCG 774-16861845 (-) CTTTCACCGCCGCGGCCCGGGTTCGATTCCCG 104 Gly_CCC_chr1:16872 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 434-16872504 (-) CCCACGCGGGAGACCCGGGTTCAATTCCCGG 105 Gly_CCC_chr2:70476 GCGCCGCTGGTGTAGTGGTATCATGCAAGAT 123-70476193 (-) TCCCATTCTTGCGACCCGGGTTCGATTCCCGG 106 Gly_CCC_chr17:1976 GCATTGGTGGTTCAATGGTAGAATTCTCGCCT 4175-19764245 (+) CCCACGCAGGAGACCCAGGTTCGATTCCTGG 107 Gly_GCC_chr1:16141 GCATGGGTGGTTCAGTGGTAGAATTCTCGCC 3094-161413164 (+) TGCCACGCGGGAGGCCCGGGTTCGATTCCCG 108 Gly_GCC_chr1:16149 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 3637-161493707 (-) GCCACGCGGGAGGCCCGGGTTCGATTCCCGG 109 Gly_GCC_chr16:7081 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 2114-70812184 (-) GCCACGCGGGAGGCCCGGGTTTGATTCCCGG 110 Gly_GCC_chr1:16145 GCATAGGTGGTTCAGTGGTAGAATTCTTGCC 0356-161450426 (+) TGCCACGCAGGAGGCCCAGGTTTGATTCCTG 111 Gly_GCC_chr16:7082 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 2597-70822667 (+) GCCATGCGGGCGGCCGGGCTTCGATTCCTGG 112 Gly_TCC_chr19:4724 GCGTTGGTGGTATAGTGGTTAGCATAGCTGC 082-4724153 (+) CTTCCAAGCAGTTGACCCGGGTTCGATTCCC 113 Gly_TCC_chr1:14539 GCGTTGGTGGTATAGTGGTGAGCATAGCTGC 7864-145397935 (-) CTTCCAAGCAGTTGACCCGGGTTCGATTCCC 114 Gly_TCC_chr17:8124 GCGTTGGTGGTATAGTGGTAAGCATAGCTGC 866-8124937 (+) CTTCCAAGCAGTTGACCCGGGTTCGATTCCC 115 Gly_TCC_chr1:16140 GCGTTGGTGGTATAGTGGTGAGCATAGTTGC 9961-161410032 (-) CTTCCAAGCAGTTGACCCGGGCTCGATTCCC 116 His_GTG_chr1:14539 GCCGTGATCGTATAGTGGTTAGTACTCTGCGT 6881-145396952 (-) TGTGGCCGCAGCAACCTCGGTTCGAATCCGA 117 His_GTG_chr1:14915 GCCATGATCGTATAGTGGTTAGTACTCTGCG 5828-149155899 (-) CTGTGGCCGCAGCAACCTCGGTTCGAATCCG 118 Ile_AAT_chr6:581492 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGC 54-58149327 (+) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 119 Ile_AAT_chr6:276559 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT 67-27656040 (+) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 120 Ile_AAT_chr6:272429 GGCTGGTTAGCTCAGTTGGTTAGAGCGTGGT 90-27243063 (-) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 121 Ile_AAT_chr17:81303 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT 09-8130382 (-) GCTAATAACGCCAAGGTCGCGGGTTCGAACC 122 Ile_AAT_chr6:265543 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT 50-26554423 (+) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 123 Ile_AAT_chr6:267452 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT 55-26745328 (-) GCTAATAACGCTAAGGTCGCGGGTTCGATCC 124 Ile_AAT_chr6:267212 GGCCGGTTAGCTCAGTTGGTCAGAGCGTGGT 21-26721294 (-) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 125 Ile_AAT_chr6:276363 GGCCGGTTAGCTCAGTCGGCTAGAGCGTGGT 62-27636435 (+) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 126 Ile_AAT_chr6:272417 GGCTGGTTAGTTCAGTTGGTTAGAGCGTGGT 39-27241812 (+) GCTAATAACGCCAAGGTCGTGGGTTCGATCC 127 Ile_GAT_chrX:37564 GGCCGGTTAGCTCAGTTGGTAAGAGCGTGGT 18-3756491 (-) GCTGATAACACCAAGGTCGCGGGCTCGACTC 128 Ile_TAT_chr19:39902 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 808-39902900 (-) ACTTATATGACAGTGCGAGCGGAGCAATGCC 129 Ile_TAT_chr2:430376 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 76-43037768 (+) ACTTATACAGCAGTACATGCAGAGCAATGCC 130 Ile_TAT_chr6:269881 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 25-26988218 (+) ACTTATATGGCAGTATGTGTGCGAGTGATGC 131 Ile_TAT_chr6:275992 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 00-27599293 (+) ACTTATACAACAGTATATGTGCGGGTGATGC 132 Ile_TAT_chr6:285053 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 67-28505460 (+) ACTTATAAGACAGTGCACCTGTGAGCAATGC 133 Leu_AAG_chr5:1805 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 24474-180524555 (-) ATTAAGGCTCCAGTCTCTTCGGAGGCGTGGG 134 Leu_AAG_chr5:1806 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 14701-180614782 (+) ATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG 135 Leu_AAG_chr6:2895 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 6779-28956860 (+) ATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG 136 Leu_AAG_chr6:2844 GGTAGCGTGGCCGAGTGGTCTAAGACGCTGG 6400-28446481 (-) ATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG 137 Leu_CAA_chr6:28864 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 000-28864105 (-) ACTCAAGCTAAGCTTCCTCCGCGGTGGGGAT 138 Leu_CAA_chr6:28908 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 830-28908934 (+) ACTCAAGCTTGGCTTCCTCGTGTTGAGGATTC 139 Leu_CAA_chr6:27573 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 417-27573524 (-) ACTCAAGCTTACTGCTTCCTGTGTTCGGGTCT 140 Leu_CAA_chr6:27570 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 348-27570454 (-) ACTCAAGTTGCTACTTCCCAGGTTTGGGGCTT 141 Leu_CAA_chr1:24916 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 8054-249168159 (+) ACTCAAGGTAAGCACCTTGCCTGCGGGCTTT 142 Leu_CAA_chr11:9296 GCCTCCTTAGTGCAGTAGGTAGCGCATCAGT 790-9296863 (+) CTCAAAATCTGAATGGTCCTGAGTTCAAGCC 143 Leu_CAA_chr1:16158 GTCAGGATGGCCGAGCAGTCTTAAGGCGCTG 1736-161581819 (-) CGTTCAAATCGCACCCTCCGCTGGAGGCGTG 144 Leu_CAG_chr1:16141 GTCAGGATGGCCGAGCGGTCTAAGGCGCTGC 1323-161411405 (+) GTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG 145 Leu_CAG_chr16:5733 GTCAGGATGGCCGAGCGGTCTAAGGCGCTGC 3863-57333945 (+) GTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG 146 Leu_TAA_chr6:14453 ACCAGGATGGCCGAGTGGTTAAGGCGTTGGA 7684-144537766 (+) CTTAAGATCCAATGGACATATGTCCGCGTGG 147 Leu_TAA_chr6:27688 ACCGGGATGGCCGAGTGGTTAAGGCGTTGGA 898-27688980 (-) CTTAAGATCCAATGGGCTGGTGCCCGCGTGG 148 Leu_TAA_chr11:5931 ACCAGAATGGCCGAGTGGTTAAGGCGTTGGA 9228-59319310 (+) CTTAAGATCCAATGGATTCATATCCGCGTGG 149 Leu_TAA_chr6:27198 ACCGGGATGGCTGAGTGGTTAAGGCGTTGGA 334-27198416 (-) CTTAAGATCCAATGGACAGGTGTCCGCGTGG 150 Leu_TAG_chr17:8023 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 632-8023713 (-) ATTTAGGCTCCAGTCTCTTCGGAGGCGTGGG 151 Leu_TAG_chr14:2109 GGTAGTGTGGCCGAGCGGTCTAAGGCGCTGG 3529-21093610 (+) ATTTAGGCTCCAGTCTCTTCGGGGGCGTGGG 152 Leu_TAG_chr16:2220 GGTAGCGTGGCCGAGTGGTCTAAGGCGCTGG 7032-22207113 (-) ATTTAGGCTCCAGTCATTTCGATGGCGTGGGT 153 Lys_CTT_chr14:5870 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA 6613-58706685 (-) CTCTTAATCCCAGGGTCGTGGGTTCGAGCCC 154 Lys_CTT_chr19:3606 GCCCAGCTAGCTCAGTCGGTAGAGCATAAGA 6750-36066822 (+) CTCTTAATCTCAGGGTTGTGGATTCGTGCCCC 155 Lys_CTT_chr19:5242 GCAGCTAGCTCAGTCGGTAGAGCATGAGACT 5393-52425466 (-) CTTAATCTCAGGGTCATGGGTTCGTGCCCCAT 156 Lys_CTT_chr1:14539 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA 5522-145395594 (-) CTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 157 Lys_CTT_chr16:3207 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA 406-3207478 (-) CCCTTAATCTCAGGGTCGTGGGTTCGAGCCC 158 Lys_CTT_chr16:3241 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA 501-3241573 (+) CTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 159 Lys_CTT_chr16:3230 GCCCGGCTAGCTCAGTCGATAGAGCATGAGA 555-3230627 (-) CTCTTAATCTCAGGGTCGTGGGTTCGAGCCG 160 Lys_CTT_chr1:55423 GCCCAGCTAGCTCAGTCGGTAGAGCATGAGA 542-55423614 (-) CTCTTAATCTCAGGGTCATGGGTTTGAGCCCC 161 Lys_CTT_chr16:3214 GCCTGGCTAGCTCAGTCGGCAAAGCATGAGA 939-3215011 (+) CTCTTAATCTCAGGGTCGTGGGCTCGAGCTCC 162 Lys_CTT_chr5:26198 GCCCGACTACCTCAGTCGGTGGAGCATGGGA 539-26198611 (-) CTCTTCATCCCAGGGTTGTGGGTTCGAGCCCC 163 Lys_TTT_chr16:7351 GCCTGGATAGCTCAGTTGGTAGAGCATCAGA 2216-73512288 (-) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 164 Lys_TTT_chr12:2784 ACCCAGATAGCTCAGTCAGTAGAGCATCAGA 3306-27843378 (+) CTTTTAATCTGAGGGTCCAAGGTTCATGTCCC 165 Lys_TTT_chr11:1224 GCCTGGATAGCTCAGTTGGTAGAGCATCAGA 30655-122430727 (+) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 166 Lys_TTT_chr1:20447 GCCCGGATAGCTCAGTCGGTAGAGCATCAGA 5655-204475727 (+) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 167 Lys_TTT_chr6:27559 GCCTGGATAGCTCAGTCGGTAGAGCATCAGA 593-27559665 (-) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 168 Lys_TTT_chr11:5932 GCCCGGATAGCTCAGTCGGTAGAGCATCAGA 3902-59323974 (+) CTTTTAATCTGAGGGTCCGGGGTTCAAGTCCC 169 Lys_TTT_chr6:27302 GCCTGGGTAGCTCAGTCGGTAGAGCATCAGA 769-27302841 (-) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 170 Lys_TTT_chr6:28715 GCCTGGATAGCTCAGTTGGTAGAACATCAGA 521-28715593 (+) CTTTTAATCTGACGGTGCAGGGTTCAAGTCCC 171 Met_CAT_chr8:12416 GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGT 9470-124169542 (-) CTCATAATCTGAAGGTCGTGAGTTCGATCCTC 172 Met_CAT_chr16:7146 GCCCTCTTAGCGCAGTGGGCAGCGCGTCAGT 0396-71460468 (+) CTCATAATCTGAAGGTCCTGAGTTCGAGCCT 173 Met_CAT_chr6:28912 GCCTCCTTAGCGCAGTAGGCAGCGCGTCAGT 352-28912424 (+) CTCATAATCTGAAGGTCCTGAGTTCGAACCT 174 Met_CAT_chr6:26735 GCCCTCTTAGCGCAGCGGGCAGCGCGTCAGT 574-26735646 (-) CTCATAATCTGAAGGTCCTGAGTTCGAGCCT 175 Met_CAT_chr6:26701 GCCCTCTTAGCGCAGCTGGCAGCGCGTCAGT 712-26701784 (+) CTCATAATCTGAAGGTCCTGAGTTCAAGCCT 176 Met_CAT_chr16:8741 GCCTCGTTAGCGCAGTAGGCAGCGCGTCAGT 7628-87417700 (-) CTCATAATCTGAAGGTCGTGAGTTCGAGCCT 177 Met_CAT_chr6:58168 GCCCTCTTAGTGCAGCTGGCAGCGCGTCAGT 492-58168564 (-) TTCATAATCTGAAAGTCCTGAGTTCAAGCCTC 178 Phe_GAA_chr6:28758 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 499-28758571 (-) CTGAAGATCTAAAGGTCCCTGGTTCGATCCC 179 Phe_GAA_chr11:5933 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 3853-59333925 (-) CTGAAGATCTAAAGGTCCCTGGTTCAATCCC 180 Phe_GAA_chr6:28775 GCCGAGATAGCTCAGTTGGGAGAGCGTTAGA 610-28775682 (-) CTGAAGATCTAAAGGTCCCTGGTTCAATCCC 181 Phe_GAA_chr6:28791 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 093-28791166 (-) CCGAAGATCTTAAAGGTCCCTGGTTCAATCC 182 Phe_GAA_chr6:28731 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGA 374-28731447 (-) CTGAAGATCTTAAAGTTCCCTGGTTCAACCCT 183 Pro_AGG_chr16:3241 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 989-3242060 (+) AGGATGCGAGAGGTCCCGGGTTCAAATCCCG 184 Pro_AGG_chr1:16768 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 4725-167684796 (-) AGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 185 Pro_CGG_chr1:16768 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 3962-167684033 (+) CGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 186 Pro_CGG_chr6:27059 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 521-27059592 (+) CGGGTGTGAGAGGTCCCGGGTTCAAATCCCG 187 Pro_TGG_chr14:2110 GGCTCGTTGGTCTAGTGGTATGATTCTCGCTT 1165-21101236 (+) TGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 188 Pro_TGG_chr11:7594 GGCTCGTTGGTCTAGGGGTATGATTCTCGGTT 6869-75946940 (-) TGGGTCCGAGAGGTCCCGGGTTCAAATCCCG 189 Pro_TGG_chr5:18061 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 5854-180615925 (-) TGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 190 Ser_TCA_chr19:4598 GCCCGGATGATCCTCAGTGGTCTGGGGTGCA 1859-45981945 (-) GGCTTCAAACCTGTAGCTGTCTAGCGACAGA 191 Ser_TCA_chr22:4454 GCTCGGATGATCCTCAGTGGTCTGGGGTGCA 6537-44546620 (+) GGCTTCAAACCTGTAGCTGTCTAGTGACAGA 192 Ser_AGA_chr6:27509 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 554-27509635 (-) CTAGAAATCCATTGGGGTTTCCCCGCGCAGG 193 Ser_AGA_chr6:26327 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 817-26327898 (+) CTAGAAATCCATTGGGGTCTCCCCGCGCAGG 194 Ser_AGA_chr6:27499 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 987-27500068 (+) CTAGAAATCCATTGGGGTTTCCCCACGCAGG 195 Ser_AGA_chr6:27521 GTAGTCGTGGCCGAGTGGTTAAGGTGATGGA 192-27521273 (-) CTAGAAACCCATTGGGGTCTCCCCGCGCAGG 196 Ser_CGA_chr17:8042 GCTGTGATGGCCGAGTGGTTAAGGCGTTGGA 199-8042280 (-) CTCGAAATCCAATGGGGTCTCCCCGCGCAGG 197 Ser_CGA_chr6:27177 GCTGTGATGGCCGAGTGGTTAAGGCGTTGGA 628-27177709 (+) CTCGAAATCCAATGGGGTCTCCCCGCGCAGG 198 Ser_CGA_chr6:27640 GCTGTGATGGCCGAGTGGTTAAGGTGTTGGA 229-27640310 (-) CTCGAAATCCAATGGGGGTTCCCCGCGCAGG 199 Ser_CGA_chr12:5658 GTCACGGTGGCCGAGTGGTTAAGGCGTTGGA 4148-56584229 (+) CTCGAAATCCAATGGGGTTTCCCCGCACAGG 200 Ser_GCT_chr6:27065 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 085-27065166 (+) ACTGCTAATCCATTGTGCTCTGCACGCGTGG 201 Ser_GCT_chr6:27265 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 775-27265856 (+) ACTGCTAATCCATTGTGCTCTGCACGCGTGG 202 Ser_GCT_chr11:6611 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 5591-66115672 (+) ACTGCTAATCCATTGTGCTTTGCACGCGTGGG 203 Ser_GCT_chr6:28565 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 117-28565198 (-) ACTGCTAATCCATTGTGCTCTGCACGCGTGG 204 Ser_GCT_chr6:28180 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 815-28180896 (+) ACTGCTAATCCATTGTGCTCTGCACACGTGG 205 Ser_GCT_chr6:26305 GGAGAGGCCTGGCCGAGTGGTTAAGGCGATG 718-26305801 (-) GACTGCTAATCCATTGTGCTCTGCACGCGTG 206 Ser_TGA_chr10:6952 GCAGCGATGGCCGAGTGGTTAAGGCGTTGGA 4261-69524342 (+) CTTGAAATCCAATGGGGTCTCCCCGCGCAGG 207 Ser_TGA_chr6:27513 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 468-27513549 (+) CTTGAAATCCATTGGGGTTTCCCCGCGCAGG 208 Ser_TGA_chr6:26312 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 824-26312905 (-) CTTGAAATCCATTGGGGTCTCCCCGCGCAGG 209 Ser_TGA_chr6:27473 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 607-27473688 (-) CTTGAAATCCATTGGGGTTTCCCCGCGCAGG 210 Thr_AGT_chr17:8090 GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTG 478-8090551 (+) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 211 Thr_AGT_chr6:26533 GGCTCCGTGGCTTAGCTGGTTAAAGCGCCTG 145-26533218 (-) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 212 Thr_AGT_chr6:28693 GGCTCCGTAGCTTAGTTGGTTAAAGCGCCTG 795-28693868 (+) TCTAGTAAACAGGAGATCCTGGGTTCGACTC 213 Thr_AGT_chr6:27694 GGCTTCGTGGCTTAGCTGGTTAAAGCGCCTG 473-27694546 (+) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 214 Thr_AGT_chr17:8042 GGCGCCGTGGCTTAGCTGGTTAAAGCGCCTG 770-8042843 (-) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 215 Thr_AGT_chr6:27130 GGCCCTGTGGCTTAGCTGGTCAAAGCGCCTG 050-27130123 (+) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 216 Thr_CGT_chr6:28456 GGCTCTATGGCTTAGTTGGTTAAAGCGCCTGT 770-28456843 (-) CTCGTAAACAGGAGATCCTGGGTTCGACTCC 217 Thr_CGT_chr16:1437 GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTC 9750-14379821 (+) TCGTAAACCGAAGATCACGGGTTCGAACCCC 218 Thr_CGT_chr6:28615 GGCTCTGTGGCTTAGTTGGCTAAAGCGCCTG 984-28616057 (-) TCTCGTAAACAGGAGATCCTGGGTTCGAATC 219 Thr_CGT_chr17:2987 GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTC 7093-29877164 (+) TCGTAAACCGAAGATCGCGGGTTCGAACCCC 220 Thr_CGT_chr6:27586 GGCCCTGTAGCTCAGCGGTTGGAGCGCTGGT 135-27586208 (+) CTCGTAAACCTAGGGGTCGTGAGTTCAAATC 221 Thr_TGT_chr6:28442 GGCTCTATGGCTTAGTTGGTTAAAGCGCCTGT 329-28442402 (-) CTTGTAAACAGGAGATCCTGGGTTCGAATCC 222 Thr_TGT_chr1:22263 GGCTCCATAGCTCAGTGGTTAGAGCACTGGT 8347-222638419 (+) CTTGTAAACCAGGGGTCGCGAGTTCGATCCT 223 Thr_TGT_chr14:2108 GGCTCCATAGCTCAGGGGTTAGAGCGCTGGT 1949-21082021 (-) CTTGTAAACCAGGGGTCGCGAGTTCAATTCT 224 Thr_TGT_chr14:2109 GGCTCCATAGCTCAGGGGTTAGAGCACTGGT 9319-21099391 (-) CTTGTAAACCAGGGGTCGCGAGTTCAAATCT 225 Thr_TGT_chr14:2114 GGCCCTATAGCTCAGGGGTTAGAGCACTGGT 9849-21149921 (+) CTTGTAAACCAGGGGTCGCGAGTTCAAATCT 226 Thr_TGT_chr5:18061 GGCTCCATAGCTCAGGGGTTAGAGCACTGGT 8687-180618758 (-) CTTGTAAACCAGGGTCGCGAGTTCAAATCTC 227 Trp_CCA_chr17:8124 GGCCTCGTGGCGCAACGGTAGCGCGTCTGAC 187-8124258 (-) TCCAGATCAGAAGGTTGCGTGTTCAAATCAC 228 Trp_CCA_chr17:1941 GACCTCGTGGCGCAATGGTAGCGCGTCTGAC 1494-19411565 (+) TCCAGATCAGAAGGTTGCGTGTTCAAGTCAC 229 Trp_CCA_chr6:26319 GACCTCGTGGCGCAACGGTAGCGCGTCTGAC 330-26319401 (-) TCCAGATCAGAAGGTTGCGTGTTCAAATCAC 230 Trp_CCA_chr12:9889 GACCTCGTGGCGCAACGGTAGCGCGTCTGAC 8030-98898101 (+) TCCAGATCAGAAGGCTGCGTGTTCGAATCAC 231 Trp_CCA_chr7:99067 GACCTCGTGGCGCAACGGCAGCGCGTCTGAC 307-99067378 (+) TCCAGATCAGAAGGTTGCGTGTTCAAATCAC 232 Tyr_ATA_chr2:21911 CCTTCAATAGTTCAGCTGGTAGAGCAGAGGA 0549-219110641 (+) CTATAGCTACTTCCTCAGTAGGAGACGTCCTT 233 Tyr_GTA_chr6:26569 CCTTCGATAGCTCAGTTGGTAGAGCGGAGGA 086-26569176 (+) CTGTAGTTGGCTGTGTCCTTAGACATCCTTAG 234 Tyr_GTA_chr2:27273 CCTTCGATAGCTCAGTTGGTAGAGCGGAGGA 650-27273738 (+) CTGTAGTGGATAGGGCGTGGCAATCCTTAGG 235 Tyr_GTA_chr6:26577 CCTTCGATAGCTCAGTTGGTAGAGCGGAGGA 332-26577420 (+) CTGTAGGCTCATTAAGCAAGGTATCCTTAGG 236 Tyr_GTA_chr14:2112 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 5623-21125716 (-) CTGTAGATTGTATAGACATTTGCGGACATCCT 237 Tyr_GTA_chr8:67025 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 602-67025694 (+) CTGTAGCTACTTCCTCAGCAGGAGACATCCTT 238 Tyr_GTA_chr8:67026 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 223-67026311 (+) CTGTAGGCGCGCGCCCGTGGCCATCCTTAGG 239 Tyr_GTA_chr14:2112 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 1258-21121351 (-) CTGTAGCCTGTAGAAACATTTGTGGACATCC 240 Tyr_GTA_chr14:2113 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 1351-21131444 (-) CTGTAGATTGTACAGACATTTGCGGACATCC 241 Tyr_GTA_chr14:2115 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 1432-21151520 (+) CTGTAGTACTTAATGTGTGGTCATCCTTAGGT 242 Tyr_GTA_chr6:26595 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 102-26595190 (+) CTGTAGGGGTTTGAATGTGGTCATCCTTAGGT 243 Tyr_GTA_chr14:2112 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 8117-21128210 (-) CTGTAGACTGCGGAAACGTTTGTGGACATCC 244 Tyr_GTA_chr6:26575 CTTTCGATAGCTCAGTTGGTAGAGCGGAGGA 798-26575887 (+) CTGTAGGTTCATTAAACTAAGGCATCCTTAG 245 Tyr_GTA_chr8:66609 TCTTCAATAGCTCAGCTGGTAGAGCGGAGGA 532-66609619 (-) CTGTAGGTGCACGCCCGTGGCCATTCTTAGG 246 Val_AAC_chr3:16949 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 0018-169490090 (+) TAACACGCGAAAGGTCCCCGGTTCGAAACCG 247 Val_AAC_chr5:18061 GTTTCCGTAGTGTAGTGGTCATCACGTTCGCC 5416-180615488 (-) TAACACGCGAAAGGTCCCCGGTTCGAAACCG 248 Val_AAC_chr6:27618 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 707-27618779 (-) TAACACGCGAAAGGTCCCTGGATCAAAACCA 249 Val_AAC_chr6:27648 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 885-27648957 (-) TAACACGCGAAAGGTCCGCGGTTCGAAACCG 250 Val_AAC_chr6:27203 GTTTCCGTAGTGTAGTGGTTATCACGTTTGCC 288-27203360 (+) TAACACGCGAAAGGTCCCCGGTTCGAAACCG 251 Val_AAC_chr6:28703 GGGGGTGTAGCTCAGTGGTAGAGCGTATGCT 206-28703277 (-) TAACATTCATGAGGCTCTGGGTTCGATCCCC 252 Val_CAC_chr1:16136 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 9490-161369562 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACCG 253 Val_CAC_chr6:27248 GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC 049-27248121 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACCG 254 Val_CAC_chr19:4724 GTTTCCGTAGTGTAGCGGTTATCACATTCGCC 647-4724719 (-) TCACACGCGAAAGGTCCCCGGTTCGATCCCG 255 Val_CAC_chr1:14929 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 8555-149298627 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACTG 256 Val_CAC_chr1:14968 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 4088-149684161 (-) TCACACGCGTAAAGGTCCCCGGTTCGAAACC 257 Val_CAC_chr6:27173 GTTTCCGTAGTGGAGTGGTTATCACGTTCGCC 867-27173939 (-) TCACACGCGAAAGGTCCCCGGTTTGAAACCA 258 Val_TAC_chr11:5931 GGTTCCATAGTGTAGTGGTTATCACGTCTGCT 8102-59318174 (-) TTACACGCAGAAGGTCCTGGGTTCGAGCCCC 259 Val_TAC_chr11:5931 GGTTCCATAGTGTAGCGGTTATCACGTCTGCT 8460-59318532 (-) TTACACGCAGAAGGTCCTGGGTTCGAGCCCC 260 Val_TAC_chr10:5895 GGTTCCATAGTGTAGTGGTTATCACATCTGCT 674-5895746 (-) TTACACGCAGAAGGTCCTGGGTTCAAGCCCC 261 Val_TAC_chr6:27258 GTTTCCGTGGTGTAGTGGTTATCACATTCGCC 405-27258477 (+) TTACACGCGAAAGGTCCTCGGGTCGAAACCG 262 iMet_CAT_chr1:1536 AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG 43726-153643797 (+) CCCATAACCCAGAGGTCGATGGATCGAAACC 263 iMet_CAT_chr6:2774 AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG 5664-27745735 (+) CCCATAACCCAGAGGTCGATGGATCTAAACC 264 Glu_TTC_chr1:16861 TCCCTGGTGGTCTAGTGGCTAGGATTCGGCG 773-16861845 (-) CTTTCACCGCCGCGGCCCGGGTTCGATTCCCG 265 Gly_CCC_chr1:17004 GCGTTGGTGGTTTAGTGGTAGAATTCTCGCCT 765-17004836 (-) CCCATGCGGGAGACCCGGGTTCAATTCCCGG 266 Gly_CCC_chr1:17053 GGCCTTGGTGGTGCAGTGGTAGAATTCTCGC 779-17053850 (+) CTCCCACGTGGGAGACCCGGGTTCAATTCCC 267 Glu_TTC_chr1:17199 GTCCCTGGTGGTCTAGTGGCTAGGATTCGGC 077-17199149 (+) GCTTTCACCGCCGCGGCCCGGGTTCGATTCCC 268 Asn_GTT_chr1:17216 TGTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 171-17216245 (+) GCTGTTAACCGAAAGATTGGTGGTTCGAGCC 269 Arg_TCT_chr1:94313 TGGCTCCGTGGCGCAATGGATAGCGCATTGG 128-94313213 (+) ACTTCTAGAGGCTGAAGGCATTCAAAGGTTC 270 Lys_CTT_chr1:14539 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA 5521-145395594 (-) CTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 271 His_GTG_chr1:14539 GCCGTGATCGTATAGTGGTTAGTACTCTGCGT 6880-145396952 (-) TGTGGCCGCAGCAACCTCGGTTCGAATCCGA 272 Gly_TCC_chr1:14539 GCGTTGGTGGTATAGTGGTGAGCATAGCTGC 7863-145397935 (-) CTTCCAAGCAGTTGACCCGGGTTCGATTCCC 273 Glu_CTC_chr1:14539 TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 9232-145399304 (-) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 274 Gln_CTG_chr1:14596 AGGTTCCATGGTGTAATGGTGAGCACTCTGG 3303-145963375 (+) ACTCTGAATCCAGCGATCCGAGTTCGAGTCT 275 Asn_GTT_chr1:14800 TGTCTCTGTGGCGTAGTCGGTTAGCGCGTTCG 0804-148000878 (+) GCTGTTAACCGAAAAGTTGGTGGTTCGAGCC 276 Asn_GTT_chr1:14824 TGTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 8114-148248188 (+) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 277 Asn_GTT_chr1:14859 GTCTCTGTGGCGCAATCGGTTAGCGCATTCG 8313-148598387 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 278 Asn_GTT_chr1:14923 GTCTCTGTGGCGCAATGGGTTAGCGCGTTCG 0569-149230643 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 279 Val_CAC_chr1:14929 GCACTGGTGGTTCAGTGGTAGAATTCTCGCC 4665-149294736 (-) TCACACGCGGGACACCCGGGTTCAATTCCCG 280 Val_CAC_chr1:14929 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 8554-149298627 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACTG 281 Gly_CCC_chr1:14968 GCACTGGTGGTTCAGTGGTAGAATTCTCGCC 0209-149680280 (-) TCCCACGCGGGAGACCCGGGTTTAATTCCCG 282 Val_CAC_chr1:14968 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 4087-149684161 (-) TCACACGCGTAAAGGTCCCCGGTTCGAAACC 283 Met_CAT_chr1:15364 TAGCAGAGTGGCGCAGCGGAAGCGTGCTGG 3725-153643797 (+) GCCCATAACCCAGAGGTCGATGGATCGAAAC 284 Val_CAC_chr1:16136 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 9489-161369562 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACCG 285 Asp_GTC_chr1:16141 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCC 0614-161410686 (-) TGTCACGCGGGAGACCGGGGTTCGATTCCCC 286 Gly_GCC_chr1:16141 TGCATGGGTGGTTCAGTGGTAGAATTCTCGC 3093-161413164 (+) CTGCCACGCGGGAGGCCCGGGTTCGATTCCC 287 Glu_CTC_chr1:16141 TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 7017-161417089 (-) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 288 Asp_GTC_chr1:16149 ATCCTTGTTACTATAGTGGTGAGTATCTCTGC 2934-161493006 (+) CTGTCATGCGTGAGAGAGGGGGTCGATTCCC 289 Gly_GCC_chr1:16149 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 3636-161493707 (-) GCCACGCGGGAGGCCCGGGTTCGATTCCCGG 290 Leu_CAG_chr1:16150 GTCAGGATGGCCGAGCGGTCTAAGGCGCTGC 0131-161500214 (-) GTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG 291 Gly_TCC_chr1:16150 CGCGTTGGTGGTATAGTGGTGAGCATAGCTG 0902-161500974 (+) CCTTCCAAGCAGTTGACCCGGGTTCGATTCCC 292 Asn_GTT_chr1:16151 CGTCTCTGTGGCGCAATCGGTTAGCGCGTTC 0030-161510104 (+) GGCTGTTAACCGAAAGGTTGGTGGTTCGATC 293 Glu_TTC_chr1:16158 CGCGTTGGTGGTGTAGTGGTGAGCACAGCTG 2507-161582579 (+) CCTTTCAAGCAGTTAACGCGGGTTCGATTCCC 294 Pro_CGG_chr1:16768 CGGCTCGTTGGTCTAGGGGTATGATTCTCGCT 3961-167684033 (+) TCGGGTGCGAGAGGTCCCGGGTTCAAATCCC 295 Pro_AGG_chr1:16768 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 4724-167684796 (-) AGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 296 Lys_TTT_chr1:20447 CGCCCGGATAGCTCAGTCGGTAGAGCATCAG 5654-204475727 (+) ACTTTTAATCTGAGGGTCCAGGGTTCAAGTC 297 Lys_TTT_chr1:20447 GCCCGGATAGCTCAGTCGGTAGAGCATCAGA 6157-204476230 (-) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 298 Leu_CAA_chr1:24916 TGTCAGGATGGCCGAGTGGTCTAAGGCGCCA 8053-249168159 (+) GACTCAAGGTAAGCACCTTGCCTGCGGGCTT 299 Glu_CTC_chr1:24916 TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 8446-249168518 (+) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 300 Tyr_GTA_chr2:27273 GCCTTCGATAGCTCAGTTGGTAGAGCGGAGG 649-27273738 (+) ACTGTAGTGGATAGGGCGTGGCAATCCTTAG 301 Ala_AGC_chr2:27274 CGGGGGATTAGCTCAAATGGTAGAGCGCTCG 081-27274154 (+) CTTAGCATGCGAGAGGTAGCGGGATCGATGC 302 Ile_TAT_chr2:430376 AGCTCCAGTGGCGCAATCGGTTAGCGCGCGG 75-43037768 (+) TACTTATACAGCAGTACATGCAGAGCAATGC 303 Gly_CCC_chr2:70476 GCGCCGCTGGTGTAGTGGTATCATGCAAGAT 122-70476193 (-) TCCCATTCTTGCGACCCGGGTTCGATTCCCGG 304 Glu_TTC_chr2:13109 TCCCATATGGTCTAGCGGTTAGGATTCCTGGT 4700-131094772 (-) TTTCACCCAGGTGGCCCGGGTTCGACTCCCG 305 Ala_CGC_chr2:15725 GGGGGATGTAGCTCAGTGGTAGAGCGCGCGC 7280-157257352 (+) TTCGCATGTGTGAGGTCCCGGGTTCAATCCCC 306 Gly_GCC_chr2:15725 GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT 7658-157257729 (-) GCCACGCGGGAGGCCCGGGTTCGATTCCCGG 307 Arg_ACG_chr3:45730 GGGCCAGTGGCGCAATGGATAACGCGTCTGA 490-45730563 (-) CTACGGATCAGAAGATTCTAGGTTCGACTCC 308 Val_AAC_chr3:16949 GGTTTCCGTAGTGTAGTGGTTATCACGTTCGC 0017-169490090 (+) CTAACACGCGAAAGGTCCCCGGTTCGAAACC 309 Val_AAC_chr5:18059 AGTTTCCGTAGTGTAGTGGTTATCACGTTCGC 6609-180596682 (+) CTAACACGCGAAAGGTCCCCGGTTCGAAACC 310 Leu_AAG_chr5:1806 AGGTAGCGTGGCCGAGCGGTCTAAGGCGCTG 14700-180614782 (+) GATTAAGGCTCCAGTCTCTTCGGGGGCGTGG 311 Val_AAC_chr5:18061 GTTTCCGTAGTGTAGTGGTCATCACGTTCGCC 5415-180615488 (-) TAACACGCGAAAGGTCCCCGGTTCGAAACCG 312 Pro_TGG_chr5:18061 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 5853-180615925 (-) TGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 313 Thr_TGT_chr5:18061 GGCTCCATAGCTCAGGGGTTAGAGCACTGGT 8686-180618758 (-) CTTGTAAACCAGGGTCGCGAGTTCAAATCTC 314 Ala_TGC_chr5:18063 TGGGGATGTAGCTCAGTGGTAGAGCGCATGC 3867-180633939 (+) TTTGCATGTATGAGGCCCCGGGTTCGATCCCC 315 Lys_CTT_chr5:18063 CGCCCGGCTAGCTCAGTCGGTAGAGCATGAG 4754-180634827 (+) ACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 316 Val_AAC_chr5:18064 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 5269-180645342 (-) TAACACGCGAAAGGTCCCCGGTTCGAAACCG 317 Lys_CTT_chr5:18064 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA 8978-180649051 (-) CTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC 318 Val_CAC_chr5:18064 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 9394-180649467 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACCG 319 Met_CAT_chr6:26286 CAGCAGAGTGGCGCAGCGGAAGCGTGCTGG 753-26286825 (+) GCCCATAACCCAGAGGTCGATGGATCGAAAC 320 Ser_GCT_chr6:26305 GGAGAGGCCTGGCCGAGTGGTTAAGGCGATG 717-26305801 (-) GACTGCTAATCCATTGTGCTCTGCACGCGTG 321 Gln_TTG_chr6:26311 GGCCCCATGGTGTAATGGTTAGCACTCTGGA 423-26311495 (-) CTTTGAATCCAGCGATCCGAGTTCAAATCTC 322 Gln_TTG_chr6:26311 GGCCCCATGGTGTAATGGTTAGCACTCTGGA 974-26312046 (-) CTTTGAATCCAGCGATCCGAGTTCAAATCTC 323 Ser_TGA_chr6:26312 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 823-26312905 (-) CTTGAAATCCATTGGGGTCTCCCCGCGCAGG 324 Met_CAT_chr6:26313 AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG 351-26313423 (-) CCCATAACCCAGAGGTCGATGGATCGAAACC 325 Arg_TCG_chr6:26323 GGACCACGTGGCCTAATGGATAAGGCGTCTG 045-26323118 (+) ACTTCGGATCAGAAGATTGAGGGTTCGAATC 326 Ser_AGA_chr6:26327 TGTAGTCGTGGCCGAGTGGTTAAGGCGATGG 816-26327898 (+) ACTAGAAATCCATTGGGGTCTCCCCGCGCAG 327 Met_CAT_chr6:26330 AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG 528-26330600 (-) CCCATAACCCAGAGGTCGATGGATCGAAACC 328 Leu_CAG_chr6:26521 CGTCAGGATGGCCGAGCGGTCTAAGGCGCTG 435-26521518 (+) CGTTCAGGTCGCAGTCTCCCCTGGAGGCGTG 329 Thr_AGT_chr6:26533 GGCTCCGTGGCTTAGCTGGTTAAAGCGCCTG 144-26533218 (-) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 330 Arg_ACG_chr6:26537 AGGGCCAGTGGCGCAATGGATAACGCGTCTG 725-26537798 (+) ACTACGGATCAGAAGATTCCAGGTTCGACTC 331 Val_CAC_chr6:26538 GGTTTCCGTAGTGTAGTGGTTATCACGTTCGC 281-26538354 (+) CTCACACGCGAAAGGTCCCCGGTTCGAAACC 332 Ala_CGC_chr6:26553 AGGGGATGTAGCTCAGTGGTAGAGCGCATGC 730-26553802 (+) TTCGCATGTATGAGGTCCCGGGTTCGATCCCC 333 Ile_AAT_chr6:265543 TGGCCGGTTAGCTCAGTTGGTTAGAGCGTGG 49-26554423 (+) TGCTAATAACGCCAAGGTCGCGGGTTCGATC 334 Pro_AGG_chr6:26555 CGGCTCGTTGGTCTAGGGGTATGATTCTCGCT 497-26555569 (+) TAGGGTGCGAGAGGTCCCGGGTTCAAATCCC 335 Lys_CTT_chr6:26556 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAG 773-26556846 (+) ACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 336 Tyr_GTA_chr6:26569 TCCTTCGATAGCTCAGTTGGTAGAGCGGAGG 085-26569176 (+) ACTGTAGTTGGCTGTGTCCTTAGACATCCTTA 337 Ala_AGC_chr6:26572 GGGGAATTAGCTCAAATGGTAGAGCGCTCGC 091-26572164 (-) TTAGCATGCGAGAGGTAGCGGGATCGATGCC 338 Met_CAT_chr6:26766 CGCCCTCTTAGCGCAGCGGGCAGCGCGTCAG 443-26766516 (+) TCTCATAATCTGAAGGTCCTGAGTTCGAGCCT 339 Ile_TAT_chr6:269881 TGCTCCAGTGGCGCAATCGGTTAGCGCGCGG 24-26988218 (+) TACTTATATGGCAGTATGTGTGCGAGTGATG 340 His_GTG_chr6:27125 TGCCGTGATCGTATAGTGGTTAGTACTCTGCG 905-27125977 (+) TTGTGGCCGCAGCAACCTCGGTTCGAATCCG 341 Ile_AAT_chr6:271449 GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT 93-27145067 (-) GCTAATAACGCCAAGGTCGCGGGTTCGATCC 342 Val_AAC_chr6:27203 AGTTTCCGTAGTGTAGTGGTTATCACGTTTGC 287-27203360 (+) CTAACACGCGAAAGGTCCCCGGTTCGAAACC 343 Val_CAC_chr6:27248 GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC 048-27248121 (-) TCACACGCGAAAGGTCCCCGGTTCGAAACCG 344 Asp_GTC_chr6:27447 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGC 452-27447524 (+) CTGTCACGCGGGAGACCGGGGTTCGATTCCC 345 Ser_TGA_chr6:27473 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 606-27473688 (-) CTTGAAATCCATTGGGGTTTCCCCGCGCAGG 346 Gln_CTG_chr6:27487 AGGTTCCATGGTGTAATGGTTAGCACTCTGG 307-27487379 (+) ACTCTGAATCCAGCGATCCGAGTTCAAATCT 347 Asp_GTC_chr6:27551 TCCTCGTTAGTATAGTGGTGAGTGTCCCCGTC 235-27551307 (-) TGTCACGCGGGAGACCGGGGTTCGATTCCCC 348 Val_AAC_chr6:27618 GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC 706-27618779 (-) TAACACGCGAAAGGTCCCTGGATCAAAACCA 349 Ile_AAT_chr6:276559 CGGCCGGTTAGCTCAGTTGGTTAGAGCGTGG 66-27656040 (+) TGCTAATAACGCCAAGGTCGCGGGTTCGATC 350 Gln_CTG_chr6:27759 GGCCCCATGGTGTAATGGTCAGCACTCTGGA 134-27759206 (-) CTCTGAATCCAGCGATCCGAGTTCAAATCTC 351 Gln_TTG_chr6:27763 GGCCCCATGGTGTAATGGTTAGCACTCTGGA 639-27763711 (-) CTTTGAATCCAGCGATCCGAGTTCAAATCTC 352 Ala_AGC_chr6:28574 TGGGGGTGTAGCTCAGTGGTAGAGCGCGTGC 932-28575004 (+) TTAGCATGTACGAGGTCCCGGGTTCAATCCC 353 Ala_AGC_chr6:28626 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 013-28626085 (-) TAGCATGCATGAGGTCCCGGGTTCGATCCCC 354 Ala_CGC_chr6:28697 AGGGGGTGTAGCTCAGTGGTAGAGCGCGTGC 091-28697163 (+) TTCGCATGTACGAGGCCCCGGGTTCGACCCC 355 Ala_AGC_chr6:28806 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 220-28806292 (-) TAGCATGCACGAGGCCCCGGGTTCAATCCCC 356 Ala_AGC_chr6:28831 GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCT 461-28831533 (-) TAGCATGCACGAGGCCCCGGGTTCAATCCCC 357 Leu_CAA_chr6:28863 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAG 999-28864105 (-) ACTCAAGCTAAGCTTCCTCCGCGGTGGGGAT 358 Leu_CAA_chr6:28908 TGTCAGGATGGCCGAGTGGTCTAAGGCGCCA 829-28908934 (+) GACTCAAGCTTGGCTTCCTCGTGTTGAGGATT 359 Gln_CTG_chr6:28909 GGTTCCATGGTGTAATGGTTAGCACTCTGGA 377-28909449 (-) CTCTGAATCCAGCGATCCGAGTTCAAATCTC 360 Leu_AAG_chr6:2891 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 1398-28911480 (-) ATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG 361 Met_CAT_chr6:28912 TGCCTCCTTAGCGCAGTAGGCAGCGCGTCAG 351-28912424 (+) TCTCATAATCTGAAGGTCCTGAGTTCGAACCT 362 Lys_TTT_chr6:28918 AGCCCGGATAGCTCAGTCGGTAGAGCATCAG 805-28918878 (+) ACTTTTAATCTGAGGGTCCAGGGTTCAAGTC 363 Met_CAT_chr6:28921 GCCTCCTTAGCGCAGTAGGCAGCGCGTCAGT 041-28921114 (-) CTCATAATCTGAAGGTCCTGAGTTCGAACCT 364 Glu_CTC_chr6:28949 TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCG 975-28950047 (+) CTCTCACCGCCGCGGCCCGGGTTCGATTCCC 365 Leu_TAA_chr6:14453 CACCAGGATGGCCGAGTGGTTAAGGCGTTGG 7683-144537766 (+) ACTTAAGATCCAATGGACATATGTCCGCGTG 366 Pro_AGG_chr7:12842 TGGCTCGTTGGTCTAGGGGTATGATTCTCGCT 3503-128423575 (+) TAGGGTGCGAGAGGTCCCGGGTTCAAATCCC 367 Arg_CCT_chr7:13902 AGCCCCAGTGGCCTAATGGATAAGGCATTGG 5445-139025518 (+) CCTCCTAAGCCAGGGATTGTGGGTTCGAGTC 368 Cys_GCA_chr7:14938 GGGGATATAGCTCAGGGGTAGAGCATTTGAC 8271-149388343 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 369 Tyr_GTA_chr8:67025 CCCTTCGATAGCTCAGCTGGTAGAGCGGAGG 601-67025694 (+) ACTGTAGCTACTTCCTCAGCAGGAGACATCC 370 Tyr_GTA_chr8:67026 CCCTTCGATAGCTCAGCTGGTAGAGCGGAGG 222-67026311 (+) ACTGTAGGCGCGCGCCCGTGGCCATCCTTAG 371 Ala_AGC_chr8:67026 TGGGGGATTAGCTCAAATGGTAGAGCGCTCG 423-67026496 (+) CTTAGCATGCGAGAGGTAGCGGGATCGATGC 372 Ser_AGA_chr8:96281 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 884-96281966 (-) CTAGAAATCCATTGGGGTCTCCCCGCGCAGG 373 Met_CAT_chr8:12416 GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGT 9469-124169542 (-) CTCATAATCTGAAGGTCGTGAGTTCGATCCTC 374 Arg_TCT_chr9:13110 GGCTCTGTGGCGCAATGGATAGCGCATTGGA 2354-131102445 (-) CTTCTAGCTGAGCCTAGTGTGGTCATTCAAA 375 Asn_GTT_chr10:2251 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 8437-22518511 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 376 Ser_TGA_chr10:6952 GGCAGCGATGGCCGAGTGGTTAAGGCGTTGG 4260-69524342 (+) ACTTGAAATCCAATGGGGTCTCCCCGCGCAG 377 Val_TAC_chr11:5931 GGTTCCATAGTGTAGTGGTTATCACGTCTGCT 8101-59318174 (-) TTACACGCAGAAGGTCCTGGGTTCGAGCCCC 378 Val_TAC_chr11:5931 GGTTCCATAGTGTAGCGGTTATCACGTCTGCT 8459-59318532 (-) TTACACGCAGAAGGTCCTGGGTTCGAGCCCC 379 Arg_TCT_chr11:5931 TGGCTCTGTGGCGCAATGGATAGCGCATTGG 8766-59318852 (+) ACTTCTAGATAGTTAGAGAAATTCAAAGGTT 380 Leu_TAA_chr11:5931 TACCAGAATGGCCGAGTGGTTAAGGCGTTGG 9227-59319310 (+) ACTTAAGATCCAATGGATTCATATCCGCGTG 381 Lys_TTT_chr11:5932 GGCCCGGATAGCTCAGTCGGTAGAGCATCAG 3901-59323974 (+) ACTTTTAATCTGAGGGTCCGGGGTTCAAGTC 382 Phe_GAA_chr11:5932 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 4969-59325042 (-) CTGAAGATCTAAAGGTCCCTGGTTCGATCCC 383 Lys_TTT_chr11:5932 GCCCGGATAGCTCAGTCGGTAGAGCATCAGA 7807-59327880 (-) CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC 384 Phe_GAA_chr11:5933 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 3852-59333925 (-) CTGAAGATCTAAAGGTCCCTGGTTCAATCCC 385 Ser_GCT_chr11:6611 GGACGAGGTGGCCGAGTGGTTAAGGCGATG 5590-66115672 (+) GACTGCTAATCCATTGTGCTTTGCACGCGTGG 386 Pro_TGG_chr11:7594 GGCTCGTTGGTCTAGGGGTATGATTCTCGGTT 6868-75946940 (-) TGGGTCCGAGAGGTCCCGGGTTCAAATCCCG 387 Ser_CGA_chr12:5658 AGTCACGGTGGCCGAGTGGTTAAGGCGTTGG 4147-56584229 (+) ACTCGAAATCCAATGGGGTTTCCCCGCACAG 388 Asp_GTC_chr12:9889 CTCCTCGTTAGTATAGTGGTTAGTATCCCCGC 7280-98897352 (+) CTGTCACGCGGGAGACCGGGGTTCAATTCCC 389 Trp_CCA_chr12:9889 GGACCTCGTGGCGCAACGGTAGCGCGTCTGA 8029-98898101 (+) CTCCAGATCAGAAGGCTGCGTGTTCGAATCA 390 Ala_TGC_chr12:1254 GGGGATGTAGCTCAGTGGTAGAGCGCATGCT 06300-125406372 (-) TTGCATGTATGAGGCCCCGGGTTCGATCCCC 391 Phe_GAA_chr12:1254 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA 12388-125412461 (-) CTGAAGATCTAAAGGTCCCTGGTTCGATCCC 392 Ala_TGC_chr12:1254 AGGGGATGTAGCTCAGTGGTAGAGCGCATGC 24511-125424583 (+) TTTGCACGTATGAGGCCCCGGGTTCAATCCC 393 Asn_GTT_chr13:3124 GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG 8100-31248174 (-) GCTGTTAACCGAAAGGTTGGTGGTTCGAGCC 394 Glu_TTC_chr13:4549 TCCCACATGGTCTAGCGGTTAGGATTCCTGGT 2061-45492133 (-) TTTCACCCAGGCGGCCCGGGTTCGACTCCCG 395 Thr_TGT_chr14:2108 GGCTCCATAGCTCAGGGGTTAGAGCGCTGGT 1948-21082021 (-) CTTGTAAACCAGGGGTCGCGAGTTCAATTCT 396 Leu_TAG_chr14:2109 TGGTAGTGTGGCCGAGCGGTCTAAGGCGCTG 3528-21093610 (+) GATTTAGGCTCCAGTCTCTTCGGGGGCGTGG 397 Thr_TGT_chr14:2109 GGCTCCATAGCTCAGGGGTTAGAGCACTGGT 9318-21099391 (-) CTTGTAAACCAGGGGTCGCGAGTTCAAATCT 398 Pro_TGG_chr14:2110 TGGCTCGTTGGTCTAGTGGTATGATTCTCGCT 1164-21101236 (+) TTGGGTGCGAGAGGTCCCGGGTTCAAATCCC 399 Tyr_GTA_chr14:2113 CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA 1350-21131444 (-) CTGTAGATTGTACAGACATTTGCGGACATCC 400 Thr_TGT_chr14:2114 AGGCCCTATAGCTCAGGGGTTAGAGCACTGG 9848-21149921 (+) TCTTGTAAACCAGGGGTCGCGAGTTCAAATC 401 Tyr_GTA_chr14:2115 TCCTTCGATAGCTCAGCTGGTAGAGCGGAGG 1431-21151520 (+) ACTGTAGTACTTAATGTGTGGTCATCCTTAGG 402 Pro_TGG_chr14:2115 TGGCTCGTTGGTCTAGGGGTATGATTCTCGCT 2174-21152246 (+) TTGGGTGCGAGAGGTCCCGGGTTCAAATCCC 403 Lys_CTT_chr14:5870 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA 6612-58706685 (-) CTCTTAATCCCAGGGTCGTGGGTTCGAGCCC 404 Ile_AAT_chr14:10278 CGGCCGGTTAGCTCAGTTGGTTAGAGCGTGG 3428-102783502 (+) TGCTAATAACGCCAAGGTCGCGGGTTCGATC 405 Glu_TTC_chr15:2632 TCCCACATGGTCTAGCGGTTAGGATTCCTGGT 7380-26327452 (-) TTTCACCCAGGCGGCCCGGGTTCGACTCCCG 406 Ser_GCT_chr15:4088 GACGAGGTGGCCGAGTGGTTAAGGCGATGG 6022-40886104 (-) ACTGCTAATCCATTGTGCTCTGCACGCGTGG 407 His_GTG_chr15:4549 GCCGTGATCGTATAGTGGTTAGTACTCTGCGT 0803-45490875 (-) TGTGGCCGCAGCAACCTCGGTTCGAATCCGA 408 His_GTG_chr15:4549 CGCCGTGATCGTATAGTGGTTAGTACTCTGC 3348-45493420 (+) GTTGTGGCCGCAGCAACCTCGGTTCGAATCC 409 Gln_CTG_chr15:6616 GGTTCCATGGTGTAATGGTTAGCACTCTGGA 1399-66161471 (-) CTCTGAATCCAGCGATCCGAGTTCAAATCTC 410 Lys_CTT_chr15:7915 TGCCCGGCTAGCTCAGTCGGTAGAGCATGGG 2903-79152976 (+) ACTCTTAATCCCAGGGTCGTGGGTTCGAGCC 411 Arg_TCG_chr15:8987 GGGCCGCGTGGCCTAATGGATAAGGCGTCTG 8303-89878376 (+) ACTTCGGATCAGAAGATTGCAGGTTCGAGTC 412 Gly_CCC_chr16:6867 GCGCCGCTGGTGTAGTGGTATCATGCAAGAT 35-686806 (-) TCCCATTCTTGCGACCCGGGTTCGATTCCCGG 413 Arg_CCG_chr16:3200 GGGCCGCGTGGCCTAATGGATAAGGCGTCTG 674-3200747 (+) ATTCCGGATCAGAAGATTGAGGGTTCGAGTC 414 Arg_CCT_chr16:3202 CGCCCCGGTGGCCTAATGGATAAGGCATTGG 900-3202973 (+) CCTCCTAAGCCAGGGATTGTGGGTTCGAGTC 415 Lys_CTT_chr16:3207 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA 405-3207478 (-) CCCTTAATCTCAGGGTCGTGGGTTCGAGCCC 416 Thr_CGT_chr16:1437 AGGCGCGGTGGCCAAGTGGTAAGGCGTCGGT 9749-14379821 (+) CTCGTAAACCGAAGATCACGGGTTCGAACCC 417 Leu_TAG_chr16:2220 GGTAGCGTGGCCGAGTGGTCTAAGGCGCTGG 7031-22207113 (-) ATTTAGGCTCCAGTCATTTCGATGGCGTGGGT 418 Leu_AAG_chr16:223 GGGTAGCGTGGCCGAGCGGTCTAAGGCGCTG 08460-22308542 (+) GATTAAGGCTCCAGTCTCTTCGGGGGCGTGG 419 Leu_CAG_chr16:5733 AGTCAGGATGGCCGAGCGGTCTAAGGCGCTG 3862-57333945 (+) CGTTCAGGTCGCAGTCTCCCCTGGAGGCGTG 420 Leu_CAG_chr16:5733 GTCAGGATGGCCGAGCGGTCTAAGGCGCTGC 4391-57334474 (-) GTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG 421 Met_CAT_chr16:8741 GCCTCGTTAGCGCAGTAGGCAGCGCGTCAGT 7627-87417700 (-) CTCATAATCTGAAGGTCGTGAGTTCGAGCCT 422 Leu_TAG_chr17:8023 GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG 631-8023713 (-) ATTTAGGCTCCAGTCTCTTCGGAGGCGTGGG 423 Arg_TCT_chr17:8024 TGGCTCTGTGGCGCAATGGATAGCGCATTGG 242-8024330 (+) ACTTCTAGTGACGAATAGAGCAATTCAAAGG 424 Gly_GCC_chr17:8029 CGCATTGGTGGTTCAGTGGTAGAATTCTCGC 063-8029134 (+) CTGCCACGCGGGAGGCCCGGGTTCGATTCCC 425 Ser_CGA_chr17:8042 GCTGTGATGGCCGAGTGGTTAAGGCGTTGGA 198-8042280 (-) CTCGAAATCCAATGGGGTCTCCCCGCGCAGG 426 Thr_AGT_chr17:8042 GGCGCCGTGGCTTAGCTGGTTAAAGCGCCTG 769-8042843 (-) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 427 Trp_CCA_chr17:8089 CGACCTCGTGGCGCAACGGTAGCGCGTCTGA 675-8089747 (+) CTCCAGATCAGAAGGTTGCGTGTTCAAATCA 428 Ser_GCT_chr17:8090 AGACGAGGTGGCCGAGTGGTTAAGGCGATG 183-8090265 (+) GACTGCTAATCCATTGTGCTCTGCACGCGTG 429 Thr_AGT_chr17:8090 CGGCGCCGTGGCTTAGTTGGTTAAAGCGCCT 477-8090551 (+) GTCTAGTAAACAGGAGATCCTGGGTTCGAAT 430 Trp_CCA_chr17:8124 GGCCTCGTGGCGCAACGGTAGCGCGTCTGAC 186-8124258 (-) TCCAGATCAGAAGGTTGCGTGTTCAAATCAC 431 Gly_TCC_chr17:8124 AGCGTTGGTGGTATAGTGGTAAGCATAGCTG 865-8124937 (+) CCTTCCAAGCAGTTGACCCGGGTTCGATTCCC 432 Asp_GTC_chr17:8125 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCC 555-8125627 (-) TGTCACGCGGGAGACCGGGGTTCGATTCCCC 433 Pro_CGG_chr17:8126 GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT 150-8126222 (-) CGGGTGCGAGAGGTCCCGGGTTCAAATCCCG 434 Thr_AGT_chr17:8129 GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTG 552-8129626 (-) TCTAGTAAACAGGAGATCCTGGGTTCGAATC 435 Ser_AGA_chr17:8129 GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA 927-8130009 (-) CTAGAAATCCATTGGGGTCTCCCCGCGCAGG 436 Trp_CCA_chr17:1941 TGACCTCGTGGCGCAATGGTAGCGCGTCTGA 1493-19411565 (+) CTCCAGATCAGAAGGTTGCGTGTTCAAGTCA 437 Thr_CGT_chr17:2987 AGGCGCGGTGGCCAAGTGGTAAGGCGTCGGT 7092-29877164 (+) CTCGTAAACCGAAGATCGCGGGTTCGAACCC 438 Cys_GCA_chr17:3702 AGGGGGTATAGCTCAGTGGTAGAGCATTTGA 3897-37023969 (+) CTGCAGATCAAGAGGTCCCCGGTTCAAATCC 439 Cys_GCA_chr17:3702 GGGGGTATAGCTCAGTGGTAGAGCATTTGAC 5544-37025616 (-) TGCAGATCAAGAGGTCCCTGGTTCAAATCCG 440 Cys_GCA_chr17:3730 GGGGGTATAGCTCAGTGGTAGAGCATTTGAC 9986-37310058 (-) TGCAGATCAAGAGGTCCCCGGTTCAAATCCG 441 Gln_TTG_chr17:4726 AGGTCCCATGGTGTAATGGTTAGCACTCTGG 9889-47269961 (+) ACTTTGAATCCAGCGATCCGAGTTCAAATCT 442 Arg_CCG_chr17:6601 GACCCAGTGGCCTAATGGATAAGGCATCAGC 6012-66016085 (-) CTCCGGAGCTGGGGATTGTGGGTTCGAGTCC 443 Arg_CCT_chr17:7303 AGCCCCAGTGGCCTAATGGATAAGGCACTGG 0000-73030073 (+) CCTCCTAAGCCAGGGATTGTGGGTTCGAGTC 444 Arg_CCT_chr17:7303 GCCCCAGTGGCCTAATGGATAAGGCACTGGC 0525-73030598 (-) CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 445 Arg_TCG_chr17:7303 AGACCGCGTGGCCTAATGGATAAGGCGTCTG 1207-73031280 (+) ACTTCGGATCAGAAGATTGAGGGTTCGAGTC 446 Asn_GTT_chr19:1383 CGTCTCTGTGGCGCAATCGGTTAGCGCGTTC 561-1383635 (+) GGCTGTTAACCGAAAGGTTGGTGGTTCGAGC 447 Gly_TCC_chr19:4724 GGCGTTGGTGGTATAGTGGTTAGCATAGCTG 081-4724153 (+) CCTTCCAAGCAGTTGACCCGGGTTCGATTCCC 448 Val_CAC_chr19:4724 GTTTCCGTAGTGTAGCGGTTATCACATTCGCC 646-4724719 (-) TCACACGCGAAAGGTCCCCGGTTCGATCCCG 449 Thr_AGT_chr19:3366 TGGCGCCGTGGCTTAGTTGGTTAAAGCGCCT 7962-33668036 (+) GTCTAGTAAACAGGAGATCCTGGGTTCGAAT 450 Ile_TAT_chr19:39902 GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT 807-39902900 (-) ACTTATATGACAGTGCGAGCGGAGCAATGCC 451 Gly_GCC_chr21:1882 GCATGGGTGGTTCAGTGGTAGAATTCTCGCC 7106-18827177 (-) TGCCACGCGGGAGGCCCGGGTTCGATTCCCG Non-Naturally Occurring Modification A TREM, a TREM core fragment or a TREM fragment described herein comprises a non-naturally occurring modification, e.g., a modification described in any one of Tables 5-9. A non-naturally occurring modification can be made according to methods known in the art. Exemplary methods of making non-naturally occurring modifications are provided in Examples 4-7.

In an embodiment, a non-naturally occurring modification is a modification that a cell, e.g., a human cell, does not make on an endogenous tRNA.

In an embodiment, a non-naturally occurring modification is a modification that a cell, e.g., a human cell, can make on an endogenous tRNA, but wherein such modification is in a location in which it does not occur on a native tRNA. In an embodiment, the non-naturally occurring modification is in a domain, linker or arm which does not have such modification in nature. In an embodiment, the non-naturally occurring modification is at a position within a domain, linker or arm, which does not have such modification in nature. In an embodiment, the non-naturally occurring modification is on a nucleotide which does not have such modification in nature. In an embodiment, the non-naturally occurring modification is on a nucleotide at a position within a domain, linker or arm, which does not have such modification in nature.

In an embodiment, a TREM, a TREM core fragment or a TREM fragment described herein comprises a non-naturally occurring modification provided in Table 5, or a combination thereof.

TABLE 5 Exemplary non-naturally occurring modifications Modification 7-deaza-adenosine Nl-methyl-adenosine N6,N6 (dimethyl)adenine N6-cis-hydroxy-isopentenyl-adenosine thio-adenosine 2-(amino)adenine 2-(aminopropyl)adenine 2-(methylthio) N6 (isopentenyl)adenine 2-(alkyl)adenine 2-(aminoalkyl)adenine 2-(aminopropyl)adenine 2-(halo)adenine 2-(propyl)adenine 2′-azido-2′-deoxy-adenosine 2′-Deoxy-2′-alpha-aminoadenosine 2′-Deoxy-2′-alpha-azidoadenosine 6-(alkyl)adenine 6-(methyl)adenine 6-(alkyl)adenine 6-(methyl)adenine 7-(deaza)adenine 8-(alkenyl)adenine 8-(alkynyl)adenine 8-(amino)adenine 8-(thioalkyl)adenine 8-(alkenyl)adenine 8-(alkyl)adenine 8-(alkynyl)adenine 8-(amino)adenine 8-(halo)adenine 8-(hydroxyl)adenine 8-(thioalkyl)adenine 8-(thiol)adenine 8-azido-adenosine azaadenine deazaadenine N6-(methyl)adenine N6-(isopentyl)adenine 7-deaza-8-aza-adenosine 7-methyladenine 1-deazaadenosine 2′-Fluoro-N6-Bz-deoxyadenosine 2′-OMe-2-Amino-adenosine 2′O-methyl-N6-Bz-deoxyadenosine 2′-alpha-ethynyladenosine 2-aminoadenine 2-Aminoadenosine 2-Amino-adenosine 2′-alpha-Trifluoromethyladenosine 2-Azidoadenosine 2′-beta-Ethynyladenosine 2-Bromoadenosine 2′-beta-Trifluoromethyladenosine 2-Chloroadenosine 2′-Deoxy-2′,2′-difluoroadenosine 2′-Deoxy-2′-alpha-mercaptoadenosine 2′-Deoxy-2′-alpha-thiomethoxyadenosine 2′-Deoxy-2′-beta-aminoadenosine 2′-Deoxy-2′-beta-azidoadenosine 2′-Deoxy-2′-beta-bromoadenosine 2′-Deoxy-2′-beta-chloroadenosine 2′-Deoxy-2′-beta-fluoroadenosine 2′-Deoxy-2′-beta-iodoadenosine 2′-Deoxy-2′-beta-mercaptoadenosine 2′-Deoxy-2′-beta-thiomethoxyadenosine 2-Fluoroadenosine 2-Iodoadenosine 2-Mercaptoadenosine 2-methoxy-adenine 2-methylthio-adenine 2-Trifluoromethyladenosine 3-Deaza-3-bromoadenosine 3-Deaza-3-chloroadenosine 3-Deaza-3-fluoroadenosine 3-Deaza-3-iodoadenosine 3-Deazaadenosine 4′-Azidoadenosine 4′-Carbocyclic adenosine 4′-Ethynyladenosine 5′-Homo-adenosine 8-Aza-adenosine 8-bromo-adenosine 8-Trifluoromethyladenosine 9-Deazaadenosine 2-aminopurine 7-deaza-2,6-diaminopurine 7-deaza-8-aza-2,6-diaminopurine 7-deaza-8-aza-2-aminopurine 2,6-diaminopurine 7-deaza-8-aza-adenine, 7-deaza-2-aminopurine 4-methylcytidine 5-aza-cytidine Pseudo-iso-cytidine pyrrolo-cytidine alpha-thio-cytidine 2-(thio)cytosine 2′-Amino-2′-deoxy-cytosine 2′-Azido-2′-deoxy-cytosine 2′-Deoxy-2′-alpha-aminocytidine 2′-Deoxy-2′-alpha-azidocytidine 3 (deaza) 5 (aza)cytosine 3 (methyl)cytosine 3-(alkyl)cytosine 3-(deaza) 5 (aza)cytosine 3-(methyl)cytidine 4,2′-O-dimethylcytidine 5 (halo)cytosine 5 (methyl)cytosine 5 (propynyl)cytosine 5 (trifluoromethyl)cytosine 5-(alkyl)cytosine 5-(alkynyl)cytosine 5-(halo)cytosine 5-(propynyl)cytosine 5-(trifluoromethyl)cytosine 5-bromo-cytidine 5-iodo-cytidine 5-propynyl cytosine 6-(azo)cytosine 6-aza-cytidine aza cytosine deaza cytosine N4 (acetyl)cytosine l-methyl-1-deaza-pseudoisocytidine 1-methyl-pseudoisocytidine 2-methoxy-5-methyl-cytidine 2-methoxy-cytidine 2-thio-5-methyl-cytidine 4-methoxy-1-methyl-pseudoisocytidine 4-methoxy-pseudoisocytidine 4-thio-l-methyl-1-deaza-pseudoisocytidine 4-thio-1-methyl-pseudoisocytidine 4-thio-pseudoisocytidine 5-aza-zebularine 5-methyl-zebularine pyrrolo-pseudoisocytidine zebularine (E)-5-(2-Bromo-vinyl)cytidine 2,2′-anhydro-cytidine 2′-Fluor-N4-Bz-cytidine 2′-Fluoro-N4-Acetyl-cytidine 2′-O-Methyl-N4-Acetyl-cytidine 2′-O-methyl-N4-Bz-cytidine 2′-a-Ethynylcytidine 2′-a-Trifluoromethylcytidine 2′-b-Ethynylcytidine 2′-b-Trifluoromethylcytidine 2′-Deoxy-2′,2′-difluorocytidine 2′-Deoxy-2′-alpha-mercaptocytidine 2′-Deoxy-2′-alpha-thiomethoxycytidine 2′-Deoxy-2′-betab-aminocytidine 2′-Deoxy-2′-beta-azidocytidine 2′-Deoxy-2′-beta-bromocytidine 2′-Deoxy-2′-beta-chlorocytidine 2′-Deoxy-2′-beta-fluorocytidine 2′-Deoxy-2′-beta-iodocytidine 2′-Deoxy-2′-beta-mercaptocytidine 2′-Deoxy-2′-beta-thiomethoxycytidine TP 2′-O-Methyl-5-(1-propynyl)cytidine 3′-Ethynylcytidine 4′-Azidocytidine 4′-Carbocyclic cytidine 4′-Ethynylcytidine 5-(1-Propynyl)ara-cytidine 5-(2-Chloro-phenyl)-2-thiocytidine 5-(4-Amino-phenyl)-2-thiocytidine 5-Aminoallyl-cytosine 5-Cyanocytidine 5-Ethynylara-cytidine 5-Ethynylcytidine 5′-Homo-cytidine 5-Methoxycytidine 5-Trifluoromethyl-Cytidine N4-Amino-cytidine N4-Benzoyl-cytidine pseudoisocytidine 6-thio-guanosine 7-deaza-guanosine 8-oxo-guanosine Nl-methyl-guanosine alpha-thio-guanosine 2-(propyl)guanine 2-(alky1)guanine 2′-Amino-2′-deoxy-guanosine 2′-Azido-2′-deoxy-guanosine 2′-Deoxy-2′-alpha-aminoguanosine 2′-Deoxy-2′-alpha-azidoguanosine 6-(methyl)guanine 6-(alky1)guanine 6-(methyl)guanine 6-methyl-guanosine 7-(alkyl)guanine 7-(deaza)guanine 7-(methyl)guanine 7-(alkyl)guanine 7-(deaza)guanine 7-(methyl)guanine 8-(alkyl)guanine 8-(alkynyl)guanine 8-(halo)guanine 8-(thioalkyl)guanine 8-(alkenyl)guanine 8-(alkyl)guanine 8-(alkynyl)guanine 8-(amino)guanine 8-(halo)guanine 8-(hydroxyl)guanine 8-(thioalkyl)guanine 8-(thiol)guanine azaguanine deaza guanine N (methyl)guanine N-(methyl)guanine l-methyl-6-thio-guanosine 6-methoxy-guanosine 6-thio-7-deaza-8-aza-guanosine 6-thio-7-deaza-guanosine 6-thio-7-methyl-guanosine 7-deaza-8-aza-guanosine 7-methyl-8-oxo-guanosine N2,N2-dimethyl-6-thio-guanosine N2-methyl-6-thio-guanosine 1-Me-guanosine 2′Fluoro-N2-isobutyl-guanosine 2′O-methyl-N2-isobutyl-guanosine 2′-alpha-Ethynylguanosine 2′-alpha-Trifluoromethylguanosine 2′-beta-Ethynylguanosine 2′-beta-Trifluoromethylguanosine 2′-Deoxy-2′,2′-difluoroguanosine 2′-Deoxy-2′-alpha-mercaptoguanosine 2′-Deoxy-2′-alpha-thiomethoxyguanosine 2′-Deoxy-2′-beta-aminoguanosine 2′-Deoxy-2′-beta-azidoguanosine 2′-Deoxy-2′-beta-bromoguanosine 2′-Deoxy-2′-beta-chloroguanosine 2′-Deoxy-2′-beta-fluoroguanosine 2′-Deoxy-2′-beta-iodoguanosine 2′-Deoxy-2′-beta-mercaptoguanosine 2′-Deoxy-2′-beta-thiomethoxyguanosine 4′-Azidoguanosine 4′-Carbocyclic guanosine 4′-Ethynylguanosine 5′-Homo-guanosine 8-bromo-guanosine 9-Deazaguanosine N2-isobutyl-guanosine 7-methylinosine allyamino-thymidine aza thymidine deaza thymidine deoxy-thymidine 5-propynyl uracil alpha-thio-uridine 1-(aminoalkylamino-carbonylethylenyl)-2(thio)-pseudouracil 1-(aminoalkylaminocarbonylethylenyl)-2,4-(dithio)pseudouracil 1-(aminoalkylaminocarbonylethylenyl)-4(thio)pseudouracil 1-(aminoalkylaminocarbonylethylenyl)-pseudouracil 1-(aminocarbonylethylenyl)-2(thio)-pseudouracil 1-(aminocarbonylethylenyl)-2,4-(dithio)pseudouracil 1-(aminocarbonylethylenyl)-4(thio)pseudouracil 1-(aminocarbonylethylenyl)-pseudouracil 1-substituted 2-(thio)-pseudouracil 1-substituted 2,4-(dithio)pseudouracil 1-substituted 4 (thio)pseudouracil 1-substituted pseudouracil 1-(aminoalkylamino-carbonylethylenyl)-2-(thio)-pseudouracil l-Methyl-3-(3-amino-3-carboxypropyl)pseudouridine l-Methyl-3-(3-amino-3-carboxyproovl)pseudo-Uradine 1-Methyl-pseudo-UTP 2 (thio)pseudouracil 2′deoxy uridine 2′fluorouridine 2-(thio)uracil 2,4-(dithio)psuedouracil 2′-methyl, 2′-amino, 2′azido, 2′fluro-guanosine 2′-Amino-2′-deoxy-uridine 2′-Azido-2′-deoxy-uridine 2′-Azido-deoxyuridine 2′-O-methylpseudouridine 2′deoxyuridine 2′fluorouridine 2′-Deoxy-2′-alpha-aminouridine TP 2′-Deoxy-2′-alpha-azidouridine TP 2-methylpseudouridine 3-(3 amino-3-carboxypropyl)uracil 4-(thio)pseudouracil 4-(thio)pseudouracil 4-(thio)uracil 4-thiouracil 5-(l,3-diazole-1-alkyl)uracil 5-(2-aminopropyl)uracil 5-(aminoalkyl)uracil 5-(dimethylaminoalkyl)uracil 5-(guanidiniumalkyl)uracil 5-(methoxycarbonylmethyl)-2-(thio)uracil 5-(methoxycarbonyl-methyl)uracil 5-(methyl)-2-(thio)uracil 5-(methyl)-2,4-(dithio)uracil 5 (methyl) 4 (thio)uracil 5 (methylaminomethyl)-2 (thio)uracil 5 (methylaminomethyl)-2,4 (dithio)uracil 5 (methylaminomethyl)-4 (thio)uracil 5 (propynyl)uracil 5 (trifluoromethyl)uracil 5-(2-aminopropyl)uracil 5-(alky1)-2-(thio)pseudouracil 5-(alkyl)-2,4 (dithio)pseudouracil 5-(alky1)-4 (thio)pseudouracil 5-(alkyl)pseudouracil 5-(alkyl)uracil 5-(alkynyl)uracil 5-(allylamino)uracil 5-(cyanoalkyl)uracil 5-(dialkylaminoalkyl)uracil 5-(dimethylaminoalkyl)uracil 5-(guanidiniumalkyl)uracil 5-(halo)uracil 5-(1,3-diazole-l-alkyl)uracil 5-(methoxy)uracil 5-(methoxycarbonylmethyl)-2-(thio)uracil 5-(methoxycarbonyl-methyl)uracil 5-(methyl) 2(thio)uracil 5-(methyl) 2,4 (dithio)uracil 5-(methyl) 4 (thio)uracil 5-(methyl)-2-(thio)pseudouracil 5-(methyl)-2,4 (dithio)pseudouracil 5-(methyl)-4 (thio)pseudouracil 5-(methyl)pseudouracil 5-(methylaminomethyl)-2 (thio)uracil 5-(methylaminomethyl)-2,4(dithio)uracil 5-(methylaminomethyl)-4-(thio)uracil 5-(propyny1)uracil 5-(trifluoromethyl)uracil 5-aminoallyl-uridine 5-bromo-uridine 5-iodo-uridine 5-uracil 6 (azo)uracil 6-(azo)uracil 6-aza-uridine allyamino-uracil aza uracil deaza uracil N3 (methyl)uracil Pseudo-uridine-1-2-ethanoic acid pseudouracil 4-Thio-pseudouridine 1-carboxymethyl-pseudouridine l-methyl-1-deaza-pseudouridine 1-propynyl-uridine l-taurinomethyl-1-methyl-uridine l-taurinomethyl-4-thio-uridine 1-taurinomethyl-pseudouridine 2-methoxy-4-thio-pseudouridine 2-thio-l-methyl-1-deaza-pseudouridine 2-thio-1-methyl-pseudouridine 2-thio-5-aza-uridine 2-thio-dihydropseudouridine 2-thio-dihydrouridine 2-thio-pseudouridine 4-methoxy-2-thio-pseudouridine 4-methoxy-pseudouridine 4-thio-1-methyl-pseudouridine 4-thio-pseudouridine 5-aza-uridine dihydropseudouridine (±)1-(2-Hydroxypropyl)pseudouridine (2R)-l-(2-Hydroxypropyl)pseudouridine (2S)-l-(2-Hydroxypropyl)pseudouridine (E)-5-(2-Bromo-vinyl)ara-uridine (E)-5-(2-Bromo-vinyl)uridine (Z)-5-(2-Bromo-vinyl)ara-uridine (Z)-5-(2-Bromo-vinyl)uridine 1-(2,2,2-Trifluoroethyl)-pseudouridine 1-(2,2,3,3,3-Pentafluoropropyl)pseudouridine 1-(2,2-Diethoxyethy l)pseudouridine 1-(2,4,6-Trimethylbenzyl)pseudouridine 1-(2,4,6-Trimethyl-benzyl)pseudo-uridine 1-(2,4,6-Trimethyl-phenyl)pseudo-uridine 1-(2-Amino-2-carboxyethyl)pseudo-uridine 1-(2-Amino-ethyl)pseudouridine 1-(2-Hydroxyethyl)pseudouridine 1-(2-Methoxyethyl)pseudouridine 1-(3,4-Bis-trifluoromethoxvbenzvl)pseudouridine 1-(3,4-Dimethoxybenzyl)pseudouridine 1-(3-Amino-3-carboxypropyl)pseudo-uridine 1-(3-Amino-propyl)pseudouridine 1-(3-Cyclopropyl-prop-2-ynyl)pseudouridine TP 1-(4-Amino-4-carboxybutyl)pseudouridine 1-(4-Amino-benzyl)pseudouridine 1-(4-Amino-buty l)pseudouridine 1-(4-Amino-phenyl)pseudouridine 1-(4-Azidobenzyl)pseudouridine 1-(4-Bromobenzyl)pseudouridine 1-(4-Chlorobenzyl)pseudouridine 1-(4-Fluorobenzyl)pseudouridin 1-(4-Iodobenzyl)pseudouridine 1-(4-Methanesulfonvlbenzvl)pseudouridine 1-(4-Methoxybenzy l)pseudouridine 1-(4-Methoxy-benzyl)pseudouridine 1-(4-Methoxy-phenyl)pseudouridine 1-(4-Methylbenzyl)pseudouridine 1-(4-Methyl-benzyl)pseudouridine 1-(4-Nitrobenzyl)pseudouridine 1-(4-Nitro-benzy!)pseudouridine 1(4-Nitro-phenyl)pseudouridine 1-(4-Thiomethoxybenzyl)pseudouridine 1-(4-Trifluoromethoxybenzvl)pseudouridine 1-(4-Trifluoromethylbenzyl)pseudouridine 1-(5-Amino-pentyl)pseudouridine 1-(6-Amino-hexyl)pseudouridine 1,6-Dimethyl-pseudouridine l-[3-(2-{2-[2-(2-Aminoethoxy)-ethoxy]- ethoxy}-ethoxy)-propionyl]pseudouridine 1-{3-[2-(2-Aminoethoxy)-ethoxy]-propionvl} pseudouridine 1-Acetylpseudouridine l-Alkyl-6-(1-propynyl)-pseudo-uridine l-Alkyl-6-(2-propynyl)-pseudo-uridine l-Alkyl-6-allyl-pseudo-uridine l-Alkyl-6-ethynyl-pseudo-uridine l-Alkyl-6-homoallyl-pseudo-uridine l-Alkyl-6-vinyl-pseudo-uridine 1-Allylpseudouridine 1-Aminomethyl-pseudo-uridine 1-Benzoylpseudouridine 1-Benzyloxymethylpseudouridine 1-Benzyl-pseudo-uridine l-Biotinyl-PEG2-pseudouridine 1-Biotinylpseudouridine 1-Butyl-pseudo-uridine 1-Cyanomethylpseudouridine 1-Cyclobutylmethyl-pseudo-uridine 1-Cyclobutyl-pseudo-uridine 1-Cycloheptylmethyl-pseudo-uridine 1-Cycloheptyl-pseudo-uridine 1-Cyclohexylmethyl-pseudo-uridine 1-Cyclohexyl-pseudo-uridine 1-Cyclooctylmethyl-pseudo-uridine 1-Cyclooctyl-pseudo-uridine 1-Cyclopentylmethyl-pseudo-uridine 1-Cyclopentyl-pseudo-uridine 1-Cyclopropylmethyl-pseudo-uridine 1-Cyclopropyl-pseudo-uridine 1-Ethyl-pseudo-uridine 1-Hexyl-pseudo-uridine 1-Homoallylpseudouridine 1-Hydroxymethylpseudouridine 1-iso-propyl-pseudo-uridine 1-Me-2-thio-pseudo-uridine 1-Me-4-thio-pseudo-uridine 1-Me-alpha-thio-pseudo-uridine 1-Methanesulfonylmethylpseudouridine 1-Methoxymethylpseudouridine uridine l-Methyl-6-(2,2,2-Trifluoroethyl)pseudo-uridine l-Methyl-6-(4-morpholino)-pseudo-uridine l-Methyl-6-(4-thiomorpholino)-pseudo-uridine l-Methyl-6-(substituted phenyl)pseudo-uridine 1-Methyl-6-amino-pseudo-uridine l-Methyl-6-azido-pseudo-uridine 1-Methyl-6-bromo-pseudo-uridine l-Methyl-6-butyl-pseudo-uridine l-Methyl-6-chloro-pseudo-uridine 1-Methyl-6-cyano-pseudo-uridine l-Methyl-6-dimethylamino-pseudo-uridine l-Methyl-6-ethoxy-pseudo-uridine l-Methyl-6-ethylcarboxylate-pseudo-uridine l-Methyl-6-ethyl-pseudo-uridine l-Methyl-6-fluoro-pseudo-uridine l-Methyl-6-formyl-pseudo-uridine 1-Methyl-6-hydroxyamino-pseudo-uridine l-Methyl-6-hydroxy-pseudo-uridine l-Methyl-6-iodo-pseudo-uridine l-Methyl-6-iso-propyl-pseudo-uridine l-Methyl-6-methoxy-pseudo-uridine l-Methyl-6-methylamino-pseudo-uridine l-Methyl-6-phenyl-pseudo-uridine l-Methyl-6-propyl-pseudo-uridine l-Methyl-6-tert-butyl-pseudo-uridine 1-Methyl-6-trifluoromethoxy-pseudo-uridine l-Methyl-6-trifluoromethyl-pseudo-uridine 1-Morpholinomethylpseudouridine 1-Pentyl-pseudo-uridineuridine 1-Phenyl-pseudo-uridine 1-Pivaloylpseudouridine 1-Propargylpseudouridine 1-Propyl-pseudo-uridine 1-propynyl-pseudouridine 1-p-tolyl-pseudo-uridine 1-tert-Butyl-pseudo-uridine 1-Thiomethoxymethylpseudouridine 1-Thiomorpholinomethylpseudouridine 1-Trifluoroacetylpseudouridine 1-Trifluoromethyl-pseudouridine 1-Vinylpseudouridine 2,2′-anhydro-uridine 2′-bromo-deoxyuridine 2′-F-5-Methyl-2′-deoxy-uridine 2′-OMe-5-Me-uridine 2′-OMe-pseudouridine 2′-alpha-Ethynyluridine 2′-alpha-Trifluoromethyluridine 2′-beta-Ethynyluridine 2′-beta-Trifluoromethyluridiner 2′-Deoxy-2′,2′-difluorouridine 2′-Deoxy-2′-a-mercaptouridin 2′-Deoxy-2′-alpha-thiomethoxyuridine 2′-Deoxy-2′-beta-aminouridine 2′-Deoxy-2′-beta-azidouridine 2′-Deoxy-2′-beta-bromouridine 2′-Deoxy-2′-beta-chlorouridine 2′-Deoxy-2′-beta-fluorouridine 2′-Deoxy-2′-beta-iodouridine 2′-Deoxy-2′-beta-mercaptouridine 2′-Deoxy-2′-beta-thiomethoxyuridine 2-methoxy-4-thio-uridine 2-methoxyuridine 2′-O-Methyl-5-(1-propynyl)uridine 3-Alkyl-pseudo-uridine 4′-Azidouridine 4′-Carbocyclic uridine 4′-Ethynyluridine 5-(1-Propynyl)ara-uridine 5-(2-Furanyl)uridine 5-Cyanouridine 5-Dimethylaminouridine 5′-Homo-uridine 5-iodo-2′-fluoro-deoxyuridine 5-Phenylethynyluridine 5-Trideuteromethyl-6-deuterouridine 5-Trifluoromethyl-Uridine 5-Vinylarauridine 6-(2,2,2-Trifluoroethyl)-pseudo-uridine 6-(4-Morpholino)-pseudo-uridine 6-(4-Thiomorpholino)-pseudo-uridine 6-(Substituted-Phenyl)-pseudo-uridine 6-Amino-pseudo-uridine 6-Azido-pseudo-uridine 6-Bromo-pseudo-uridine 6-Butyl-pseudo-uridine 6-Chloro-pseudo-uridine 6-Cyano-pseudo-uridine 6-Dimethylamino-pseudo-uridine 6-Ethoxy-pseudo-uridine 6-Ethylcarboxylate-pseudo-uridine 6-Ethyl-pseudo-uridine 6-Fluoro-pseudo-uridine 6-Formyl-pseudo-uridine 6-Hydroxyamino-pseudo-uridine 6-Hydroxy-pseudo-uridine 6-Iodo-pseudo-uridine 6-iso-Propyl-pseudo-uridine 6-Methoxy-pseudo-uridine 6-Methylamino-pseudo-uridine 6-Methyl-pseudo-uridine 6-Phenyl-pseudo-uridine 6-Phenyl-pseudo-uridine 6-Propyl-pseudo-uridine 6-tert-Butyl-pseudo-uridine 6-Trifluoromethoxy-pseudo-uridine 6-Trifluoromethyl-pseudo-uridine alpha-thio-pseudo-uridine Pseudouridine 1-(4-methylbenzenesulfonic acid) Pseudouridine 1-(4-methylbenzoic acid) TP Pseudouridine l-[3-(2-ethoxy)]propionic acid Pseudouridine l-[3-{2-(2-[2-(2-ethoxy)-ethoxy]- ethoxy)-ethoxy}]propionic acid Pseudouridine 1-[3-{2-(2-[2-{2(2-ethoxy)-ethoxy}- ethoxy]-ethoxy)-ethoxy}]propionic acid Pseudouridine l-[3-{2-(2-[2-ethoxy]-ethoxy)-ethoxv}]propionic acid Pseudouridine l-[3-{2-(2-ethoxy)-ethoxv}] propionic acid Pseudouridine 1-methylphosphonic acid Pseudouridine TP 1-methylphosphonic acid diethyl ester Pseudo-uridine-N1-3-propionic acid Pseudo-uridine-N1-4-butanoic acid Pseudo-uridine-N 1-5-pentanoic acid Pseudo-uridine-N1-6-hexanoic acid Pseudo-uridine-Nl-7-heptanoic acid Pseudo-uridine-N1-methy1-p-benzoic acid Pseudo-uridine-N1-p-benzoic acid

In an embodiment, a TREM, a TREM core fragment or a TREM fragment described herein comprises a modification provided in Table 6, or a combination thereof. The modifications provided in Table 6 occur naturally in RNAs, and are used herein on a synthetic TREM, a TREM core fragment or a TREM fragment at a position that does not occur in nature.

TABLE 6 Additional exemplary modifications Modification 2-methylthio-N6-(cis-hvdroxvisopentenvl)adenosine 2-methylthio-N6-methyladenosine 2-methylthio-N6-threonyl carbamoyladenosine N6-glycinylcarbamoyladenosine N6-isopentenyladenosine N6-methyladenosine N6-threonylcarbamoyladenosine 1,2′-O-dimethyladenosine 1-methyladenosine 2′-O-methyladenosine 2′-O-ribosyladenosine (phosphate) 2-methyladenosine 2-methylthio-N6 isopentenyladenosine 2-methylthio-N6-hydroxynorvalyl carbamoyladenosine 2′-O-methyladenosine 2′-O-ribosyladenosine (phosphate) isopenteny ladenosine N6-(cis-hydroxyisopentenyl)adenosine N6,2′-O-dimethyladenosine N6,2′-O-dimethyladenosine N6,N6,2′-O-trimethyladenosine N6,N6-dimethyladenosine N6-acetyladenosine N6-hydroxynorvalylcarbamoyladenosine N6-methyl-N6-threonylcarbamoyladenosine 2-methyladenosine 2-methylthio-N⁶-isopentenyladenosine 2-thiocytidine 3-methylcytidine 5-formylcytidine 5-hydroxymethylcytidine 5-methylcytidine N4-acetylcytidine 2′-O-methylcytidine 2′-O-methylcytidine 5,2′-O-dimethylcytidine 5-formyl-2′-O-methylcytidine lysidine N4,2′-O-dimethy lcytidine N4-acetyl-2′-O-methylcytidine N4-methylcytidine N4,N4-Dimethyl-2′-OMe-Cytidine 7-methylguanosine N2,2′-O-dimethylguanosine N2-methylguanosine wyosme 1,2′-O-dimethylguanosine 1-methylguanosine 2′-O-methylguanosine 2′-O-ribosylguanosine (phosphate) 2′-O-methylguanosine 2′-O-ribosylguanosine (phosphate) 7-aminomethyl-7-deazaguanosine 7-cyano-7-deazaguanosine archaeosine methylwyosine N2,7-dimethylguanosine N2,N2,2′-O-trimethylguanosine N2,N2,7-trimethylguanosine N2,N2-dimethylguanosine N2,7,2′-O-trimethylguanosine 1-methylinosine mosme 1,2′-O-dimethylinosine 2′-O-methylinosine 2′-O-methylinosine epoxyqueuosine galactosyl-queuosine mannosyl-queuosine 2′-O-methyluridine 2-thiouridine 3-methyluridine 5-carboxymethyluridine 5-hydroxyuridine 5-methyluridine 5-taurinomethyl-2-thiouridine 5-taurinomethyluridine dihydrouridine pseudouridine (3-(3-amino-3-carboxypropyl)uridine l-methyl-3-(3-amino-5-carboxypropyl)pseudouridine 1-methylpseduouridine 1-methyl-pseudouridine 2′-O-methyluridine 2′-O-methylpseudouridine 2′-O-methyluridine 2-thio-2′-O-methyluridine 3-(3-amino-3-carboxypropyl)uridine 3,2′-0-dimethyluridine 3-Methyl-pseudo-Uridine 4-thiouridine 5-(carboxyhydroxymethyl)uridine 5-(carboxyhydroxymethyl)uridine methyl ester 5,2′-O-dimethyluridine 5,6-dihydro-uridine 5-aminomethy1-2-thiouridine 5-carbamoylmethyl-2′-0-methyluridine 5-carbamoylmethyluridine 5-carboxyhydroxymethyluridine 5-carboxyhydroxymethyluridine methyl ester 5-carboxymethylaminomethyl-2′-O-methyluridine 5-carboxymethylaminomethyl-2-thiouridine 5-carboxymethylaminomethyl-2-thiouridine 5-carboxymethylaminomethyluridine 5-carboxymethylaminomethyluridine 5-Carbamoylmethyluridine 5-methoxycarbonylmethyl-2′-O-methyluridine 5-methoxycarbonylmethy1-2-thiouridine 5-methoxycarbonylmethyluridine 5-methoxyuridine 5-methyl-2-thiouridine 5-methylaminomethyl-2-selenouridine 5-methylaminomethyl-2-thiouridine 5-methylaminomethyluridine 5-Methyldihydrouridine 5-Oxyacetic acid-Uridine 5-Oxyacetic acid-methyl ester-Uridin Nl-methyl-pseudo-uridine uridine 5-oxyacetic acid uridine 5-oxyacetic acid methyl ester 3-(3-Amino-3-carboxypropyl)-Uridine 5-(iso-Pentenylaminomethyl)-2-thiouridine 5-(iso-Pentenylaminomethyl)-2′-O-methyluridine 5-(iso-Pentenylaminomethyl)uridine wybutosine hydroxywybutosine isowyosme peroxywybutosine undermodified hydroxywybutosine 4-demethylwyosine altriol

In an embodiment, a TREM, a TREM core fragment or a TREM fragment described herein comprises a non-naturally occurring modification provided in Table 7, or a combination thereof.

TABLE 7 Additional exemplary non-naturally occurring modifications Modification 2,6-(diamino)purine 1-(aza)-2-(thio)-3-(aza)-phenoxazin-1-yl 1,3-(diaza)-2-(oxo)-phenthiazin-1-yl 1,3-(diaza)-2-(oxo)-phenoxazin-1-yl 1,3,5-(triaza)-2,6-(dioxa)-naphthalene 2 (amino)purine 2,4,5-(trimethyl)phenyl 2′methyl, 2′amino, 2′azido, 2′fluro-cytidine 2′methyl, 2′amino, 2′azido, 2′fluro-adenine 2′methyl, 2′amino, 2′azido, 2′fluro-uridine 2′-amino-2′-deoxyribose 2-amino-6-Chloro-purine 2-aza-inosinyl 2′-azido-2′-deoxyribose 2′fluoro-2′-deoxyribose 2′-fluoro-modified bases 2′-O-methyl-ribose 2-oxo-7-aminopyridopyrimidin-3-yl 2-oxo-pyridopyrimidine-3-yl 2-pyridinone 3 nitropyrrole 3-(methyl)-7-(propynyl)isocarbostyrilyl 3-(methyl)isocarbostyrilyl 4-(fluoro)-6-(methyl)benzimidazole 4-(methyl)benzimidazole 4-(methyl)indolyl 4,6-(dimethyl)indolyl 5 nitroindole 5 substituted pyrimidines 5-(methyl)isocarbostyrilyl 5-nitroindole 6-(aza)pyrimidine 6-(azo)thymine 6-(methyl)-7-(aza)indolyl 6-chloro-purine 6-phenyl-pyrrolo-pyrimidin-2-on-3-yl 7-(aminoalkylhydroxy)-1-(aza)-2-(thio)-3-(aza)-phenthiazin-1-yl 7-(aminoalkylhydroxy)-1-(aza)-2-(thio)-3-(aza)-phenoxazin-1-yl 7-(aminoalkylhydroxy)-1,3-(diaza)-2-(oxo)-phenoxazin-1-yl 7-(aminoalkylhydroxy)-1,3-(diaza)-2-(oxo)-phenthiazin-1-yl 7-(aminoalkylhydroxy)-1,3-(diaza)-2-(oxo)-phenoxazin-l-yl 7-(aza)indolyl 7-(guanidiniumalkylhydroxy)-1-(aza)-2-(thio)-3-(aza)-phenoxazinl-yl 7-(guanidiniumalkylhydroxy)-1-(aza)-2-(thio)-3-(aza)-phenthiazin-1-yl 7-(guanidiniumalkylhydroxy)-1-(aza)-2-(thio)-3-(aza)-phenoxazin-1-yl 7-(guanidiniumalkylhydroxy)-1,3-(diaza)-2-(oxo)-phenoxazin-1-yl 7-(guanidiniumalkyl-hydroxy)-1,3-(diaza)-2-(oxo)-phenthiazin-1-yl 7-(guanidiniumalkylhydroxy)-1,3-(diaza)-2-(oxo)-phenoxazin-1-yl 7-(propynyl)isocarbostyrilyl 7-(propynyl)isocarbostyrilyl, propynyl-7-(aza)indolyl 7-deaza-inosinyl 7-substituted 1-(aza)-2-(thio)-3-(aza)-phenoxazin-1-yl 7-substituted 1,3-(diaza)-2-(oxo)-phenoxazin-1-yl 9-(methyl)-imidizopyridinyl aminoindolyl anthracenyl bis-ortho-(aminoalkylhydroxy)-6-phenyl-pyrrolo-nvrimidin-2-on-3-yl bis-ortho-substituted-6-phenyl-pyrrolo-pyrimidin-2-on-3-yl difluorotolyl hypoxanthine imidizopyridinyl inosinyl isocarbostyrilyl isoguanosine N2-substituted purines N6-methyl-2-amino-purine N6-substituted purines N-alkylated derivative napthalenyl nitrobenzimidazolyl nitroimidazolyl nitroindazolyl nitropyrazolyl nubularine O6-substituted purines O-alkylated derivative ortho-(aminoalkylhydroxy)-6-phenyl-pyrrolo-pyrimidin-2-on-3-yl ortho-substituted-6-phenyl-pyrrolo-pyrimidin-2-on-3-yl Oxoformycin TP para-(aminoalkylhydroxy)-6-phenyl-pyrrolo-pyrimidin-2-on-3-yl para-substituted-6-phenyl-pyrrolo-pyrimidin-2-on-3-yl pentacenyl phenanthracenyl phenyl propynyl-7-(aza)indolyl pyrenyl pyridopyrimidin-3-yl pyridopyrimidin-3-yl, 2-oxo-7-amino-pyridopyrimidin-3-yl pyrrolo-pyrimidin-2-on-3-yl pyrrolopyrimidinyl pyrrolopyrizinyl stilbenzyl substituted 1,2,4-triazoles tetracenyl tubercidine xanthine Xanthosine 2-thio-zebularine 5-aza-2-thio-zebularine 7-deaza-2-amino-purine pyridin-4-one ribonucleoside 2-Amino-riboside Formycin A Formycin B Pyrrolosine 2′-OH-ara-adenosine 2′-OH-ara-cytidine 2′-OH-ara-uridine 2′-OH-ara-guanosine 5-(2-carbomethoxyvinyl)uridine N6-(19-Amino-pentaoxanonadecyl)adenosine

In an embodiment, a TREM, a TREM core fragment or a TREM fragment described herein comprises a non-naturally occurring modification provided in Table 8, or a combination thereof.

TABLE 8 Exemplary backbone modifications Modification 3′-alkylene phosphonates 3′-amino phosphoramidate alkene containing backbones aminoalkylphosphoramidates aminoalkylphosphotriesters boranophosphates —CH2-0-N(CH3)—CH2— —CH2—N(CH3)—N(CH3)—CH2— —CH2—NH—CH2— chiral phosphonates chiral phosphorothioates formacetyl and thioformacetyl backbones methylene (methylimino) methylene formacetyl and thioformacetyl backbones methyleneimino and methylenehydrazino backbones morpholino linkages —N(CH3)—CH2—CH2— oligonucleosides with heteroatom intenucleoside linkage phosphinates phosphoramidates phosphorodithioates phosphorothioate intenucleoside linkages phosphorothioates phosphotriesters PNA siloxane backbones sulfamate backbones sulfide sulfoxide and sulfone backbones sulfonate and sulfonamide backbones thionoalkylphosphonates thionoalkylphosphotriesters thionophosphoramidates methylphosphonates phosphonoacetates Phosphorothioate Constrained nucleic acid (CNA) 2′-O-methyl 2′-O-methoxyethyl (MOE) 2′ Fluoro Locked nucleic acid (LNA) (S)-constrained ethyl (cEt) Fluoro hexitol nucleic acid (FHNA) 5′-phosphorothioate Phosphorodiamidate Morpholino Oligomer (PMO) Tricyclo-DNA (tcDNA) (S) 5′-C-methyl (E)-vinylphosphonate Methyl phosphonate (S) 5′-C-methyl with phosphate (R) 5′-C-methyl with phosphate DNA (R) 5′-C-methyl GNA (glycol nucleic acid) alkyl phosphonates Phosphorothioate Constrained nucleic acid (CNA) 2′-O-methyl 2′-O-methoxyethyl (MOE) 2′ Fluoro Locked nucleic acid (LNA) (S)-constrained ethyl (cEt) Fluoro hexitol nucleic acid (FHNA) 5′-phosphorothioate Phosphorodiamidate Morpholino Oligomer (PMO) Tricyclo-DNA (tcDNA) (S) 5′-C-methyl (E)-vinylphosphonate Methyl phosphonate (S) 5′-C-methyl with phosphate (R) 5′-C-methyl with phosphate DNA (R) 5′-C-methyl GNA (glycol nucleic acid) alkyl phosphonates

In an embodiment, a TREM, a TREM core fragment or a TREM fragment described herein comprises a non-naturally occurring modification provided in Table 9, or a combination thereof.

TABLE 9 Exemplary non-naturally occurring backbone modificiations Name of synthetic backbone modifications Phosphorothioate Constrained nucleic acid (CNA) 2′-O-methylation 2′-O-methoxyethylribose (MOE) 2′ Fluoro Locked nucleic acid (LNA) (S)-constrained ethyl (cEt) Fluoro hexitol nucleic acid (FHNA) 5′phosphorothioate Phosphorodiamidate Morpholino Oligomer (PMO) Tricyclo-DNA (tcDNA) (5) 5′-C-methyl (E)-vinylphosphonate Methyl phosphonate (S) 5′-C-methyl with phosphate

TREM, TREM Core Fragment and TREM Fragment Fusions

In an embodiment, a TREM, a TREM core fragment or a TREM fragment disclosed herein comprises an additional moiety, e.g., a fusion moiety. In an embodiment, the fusion moiety can be used for purification, to alter folding of the TREM, TREM core fragment or TREM fragment, or as a targeting moiety. In an embodiment, the fusion moiety can comprise a tag, a linker, can be cleavable or can include a binding site for an enzyme. In an embodiment, the fusion moiety can be disposed at the N terminal of the TREM or at the C terminal of the TREM, TREM core fragment or TREM fragment. In an embodiment, the fusion moiety can be encoded by the same or different nucleic acid molecule that encodes the TREM, TREM core fragment or TREM fragment.

TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises a consensus sequence provided herein.

In an embodiment, a TREM disclosed herein comprises a consensus sequence of Formula I_(ZZZ), wherein _(ZZZ) indicates any of the twenty amino acids and Formula I corresponds to all species.

In an embodiment, a TREM disclosed herein comprises a consensus sequence of Formula II_(ZZZ), wherein _(ZZZ) indicates any of the twenty amino acids and Formula II corresponds to mammals.

In an embodiment, a TREM disclosed herein comprises a consensus sequence of Formula III_(ZZZ), wherein _(ZZZ) indicates any of the twenty amino acids and Formula III corresponds to humans.

In an embodiment, _(ZZZ) indicates any of the twenty amino acids: alanine, arginine, asparagine, aspartate, cysteine, glutamine, glutamate, glycine, histidine, isoleucine, methionine, leucine, lysine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, or valine.

In an embodiment, a TREM disclosed herein comprises a property selected from the following:

a) under physiological conditions residue R₀ forms a linker region, e.g., a Linker 1 region;

b) under physiological conditions residues R₁-R₂-R₃-R₄-R₅-R₆-R₇ and residues R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁ form a stem region, e.g., an AStD stem region;

c) under physiological conditions residues R₈-R₉ forms a linker region, e.g., a Linker 2 region;

d) under physiological conditions residues -R₁₀-R₁₁-R₁₂-R₁₃-R₁₄ R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈ form a stem-loop region, e.g., a D arm Region;

e) under physiological conditions residue -R₂₉ forms a linker region, e.g., a Linker 3 Region;

f) under physiological conditions residues -R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆ form a stem-loop region, e.g., an AC arm region;

g) under physiological conditions residue -[R₄₇]_(x) comprises a variable region, e.g., as described herein;

h) under physiological conditions residues -R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄ form a stem-loop region, e.g., a T arm Region; or

i) under physiological conditions residue R₇₂ forms a linker region, e.g., a Linker 4 region.

Alanine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(ALA) (SEQ ID NO: 562),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂, wherein R is a ribonucleotide residue and the consensus for Ala is: R₀=absent; R₁₄, R₅₇=are independently A or absent; R₂₆=A, C, G or absent; R₅, R₆, R₁₅, R₁₆, R₂₁, R₃₀, R₃₁, R₃₂, R₃₄, R₃₇, R₄₁, R₄₂, R₄₃, R₄₄, R₄₅, R₄₈, R₄₉, R₅₀, R₅₈, R₅₉, R₆₃, R₆₄, R₆₆, R₆₇=are independently N or absent; R₁₁, R₃₅, R₆₅=are independently A, C, U or absent; R₁, R₉, R₂₀, R₃₈, R₄₀, R₅₁, R₅₂, R₅₆=are independently A, G or absent; R₇, R₂₂, R₂₅, R₂₇, R₂₉, R₄₆, R₅₃, R₇₂=are independently A, G, U or absent; R₂₄, R₆₉=are independently A, U or absent; R₇₀, R₇₁=are independently C or absent; R₃, R₄=are independently C, G or absent; R₁₂, R₃₃, R₃₆, R₆₂, R₆₈=are independently C, G, U or absent; R₁₃, R₁₇, R₂₈, R₃₉, R₅₅, R₆₀, R₆₁=are independently C, U or absent; R₁₀, R₁₉, R₂₃=are independently G or absent; R₂=G, U or absent; R₈, R₁₈, R₅₄=are independently U or absent; [R₄₇]_(x)=N or absent; wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(ALA) (SEQ ID NO: 563),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ala is:

R₀, R₁₈=are absent;

R₁₄, R₂₄, R₅₇=are independently A or absent;

R₁₅, R₂₆, R₆₄=are independently A, C, G or absent;

R₁₆, R₃₁, R₅₀, R₅₉=are independently N or absent;

R₁₁, R₃₂, R₃₇, R₄₁, R₄₃, R₄₅, R₄₉, R₆₅, R₆₆=are independently A, C, U or absent;

R₁, R₅, R₉, R₂₅, R₂₇, R₃₈, R₄₀, R₄₆, R₅₁, R₅₆=are independently A, G or absent;

R₇, R₂₂, R₂₉, R₄₂, R₄₄, R₅₃, R₆₃, R₇₂=are independently A, G, U or absent;

R₆, R₃₅, R₆₉=are independently A, U or absent;

R₅₅, R₆₀, R₇₀, R₇₁=are independently C or absent;

R₃=C, G or absent;

R₁₂, R₃₆, R₄₈=are independently C, G, U or absent;

R₁₃, R₁₇, R₂₈, R₃₀, R₃₄, R₃₉, R₅₈, R₆₁, R₆₂, R₆₇, R₆₈=are independently C, U or absent;

R₄, R₁₀, R₁₉, R₂₀, R₂₃, R₅₂=are independently G or absent;

R₂, R₈, R₃₃=are independently G, U or absent;

R₂₁, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(ALA) (SEQ ID NO: 564),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ala is:

R₀, R₁₈=are absent;

R₁₄, R₂₄, R₅₇, R₇₂=are independently A or absent;

R₁₅, R₂₆, R₆₄=are independently A, C, G or absent;

R₁₆, R₃₁, R₅₀=are independently N or absent;

R₁, R₃₂, R₃₇, R₄₁, R₄₃, R₄₅, R₄₉, R₆₅, R₆₆=are independently A, C, U or absent;

R₅, R₉, R₂₅, R₂₇, R₃₈, R₄₀, R₄₆, R₅₁, R₅₆=are independently A, G or absent;

R₇, R₂₂, R₂₉, R₄₂, R₄₄, R₅₃, R₆₃=are independently A, G, U or absent;

R₆, R₃₅=are independently A, U or absent;

R₅₅, R₆₀, R₆₁, R₇₀, R₇₁=are independently C or absent;

R₁₂, R₄₈, R₅₉=are independently C, G, U or absent;

R₁₃, R₁₇, R₂₈, R₃₀, R₃₄, R₃₉, R₅₈, R₆₂, R₆₇, R₆₈=are independently C, U or absent;

R₁, R₂, R₃, R₄, R₁₀, R₁₉, R₂₀, R₂₃, R₅₂=are independently G or absent;

R₃₃, R₃₆=are independently G, U or absent;

R₈, R₂₁, R₅₄, R₆₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Arginine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(ARG) (SEQ ID NO: 565),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Arg is:

R₅₇=A or absent;

R₉, R₂₇=are independently A, C, G or absent;

R₁, R₂, R₃, R₄, R₅, R₆, R₇, R₁₁, R₁₂, R₁₆, R₂₁, R₂₂, R₂₃, R₂₅, R₂₆, R₂₉, R₃₀, R₃₁, R₃₂, R₃₃, R₃₄, R₃₇, R₄₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₁, R₅₈, R₆₂, R₆₃, R₆₄, R₆₅, R₆₆, R₆₇, R₆₅, R₆₉, R₇₀, R₇₁=are independently N or absent;

R₁₃, R₁₇, R₄₁=are independently A, C, U or absent;

R₁₉, R₂₀, R₂₄, R₄₀, R₅₆=are independently A, G or absent;

R₁₄, R₁₅, R₇₂=are independently A, G, U or absent;

R₁₈=A, U or absent;

R₃₈=C or absent;

R₃₅, R₄₃, R₆₁=are independently C, G, U or absent;

R₂₈, R₅₅, R₅₉, R₆₀=are independently C, U or absent;

R₀, R₁₀, R₅₂=are independently G or absent;

R₈, R₃₉=are independently G, U or absent;

R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(ARG) (SEQ ID NO: 566),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Arg is:

R₁₈=absent;

R₂₄, R₅₇=are independently A or absent;

R₄₁=A, C or absent;

R₃, R₇, R₃₄, R₅₀=are independently A, C, G or absent;

R₂, R₅, R₆, R₁₂, R₂₆, R₃₂, R₃₇, R₄₄, R₅₈, R₆₆, R₆₇, R₆₈, R₇₀=are independently N or absent;

R₄₉, R₇₁=are independently A, C, U or absent;

R₁, R₁₅, R₁₉, R₂₅, R₂₇, R₄₀, R₄₅, R₄₆, R₅₆, R₇₂=are independently A, G or absent;

R₁₄, R₂₉, R₆₃=are independently A, G, U or absent;

R₁₆, R₂₁=are independently A, U or absent;

R₃₈, R₆₁=are independently C or absent;

R₃₃, R₄₈=are independently C, G or absent;

R₄, R₉, R₁₁, R₄₃, R₆₂, R₆₄, R₆₉=are independently C, G, U or absent;

R₁₃, R₂₂, R₂₈, R₃₀, R₃₁, R₃₅, R₅₅, R₆₀, R₆₅=are independently C, U or absent;

R₀, R₁₀, R₂₀, R₂₃, R₅₁, R₅₂=are independently G or absent;

R₈, R₃₉, R₄₂=are independently G, U or absent;

R₁₇, R₃₆, R₅₃, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(ARG) (SEQ ID NO: 567),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Arg is:

R₁₈=is absent;

R₁₅, R₂₁, R₂₄, R₄₁, R₅₇=are independently A or absent;

R₃₄, R₄₄=are independently A, C or absent;

R₃, R₅, R₅₈=are independently A, C, G or absent;

R₂, R₆, R₆₆, R₇₀=are independently N or absent;

R₃₇, R₄₉=are independently A, C, U or absent;

R₁, R₂₅, R₂₉, R₄₀, R₄₅, R₄₆, R₅₀=are independently A, G or absent;

R₁₄, R₆₃, R₆₈=are independently A, G, U or absent;

R₁₆=A, U or absent;

R₃₈, R₆₁=are independently C or absent;

R₇, R₁₁, R₁₂, R₂₆, R₄₈=are independently C, G or absent;

R₆₄, R₆₇, R₆₉=are independently C, G, U or absent;

R₄, R₁₃, R₂₂, R₂₈, R₃₀, R₃₁, R₃₅, R₄₃, R₅₅, R₆₀, R₆₂, R₆₅, R₇₁=are independently C, U or absent;

R₀, R₁₀, R₁₉, R₂₀, R₂₃, R₂₇, R₃₃, R₅₁, R₅₂, R₅₆, R₇₂=are independently G or absent;

R₈, R₉, R₃₂, R₃₉, R₄₂=are independently G, U or absent;

R₁₇, R₃₆, R₅₃, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Asparagine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(ASN) (SEQ ID NO: 568),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asn is:

R₀, R₁₈=are absent;

R₄₁=A or absent;

R₁₄, R₄₈, R₅₆=are independently A, C, G or absent;

R₂, R₄, R₅, R₆, R₁₂, R₁₇, R₂₆, R₂₉, R₃₀, R₃₁, R₄₄, R₄₅, R₄₆, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₅, R₆₆, R₆₇, R₆₈, R₇₀, R₇₁=are independently N or absent;

R₁₁, R₁₃, R₂₂, R₄₂, R₅₅, R₅₉=are independently A, C, U or absent;

R₉, R₁₅, R₂₄, R₂₇, R₃₄, R₃₇, R₅₁, R₇₂=are independently A, G or absent;

R₁, R₇, R₂₅, R₆₉=are independently A, G, U or absent;

R₄₀, R₅₇=are independently A, U or absent;

R₆₀=C or absent;

R₃₃=C, G or absent;

R₂₁, R₃₂, R₄₃, R₆₄=are independently C, G, U or absent;

R₃, R₁₆, R₂₈, R₃₅, R₃₆, R₆₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₅₂=are independently G or absent;

R₅₄=G, U or absent;

R₈, R₂₃, R₃₈, R₃₉, R₅₃=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(ASN) (SEQ ID NO: 569),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asn is:

R₀, R₁₈=are absent

R₂₄, R₄₁, R₄₆, R₆₂=are independently A or absent;

R₅₉=A, C or absent;

R₁₄, R₅₆, R₆₆=are independently A, C, G or absent;

R₁₇, R₂₉=are independently N or absent;

R₁₁, R₂₆, R₄₂, R₅₅=are independently A, C, U or absent;

R₁, R₉, R₁₂, R₁₅, R₂₅, R₃₄, R₃₇, R₄₈, R₅₁, R₆₇, R₆₈, R₆₉, R₇₀, R₇₂=are independently A, G or absent;

R₄₄, R₄₅, R₅₈=are independently A, G, U or absent;

R₄₀, R₅₇=are independently A, U or absent;

R₅, R₂₈, R₆₀=are independently C or absent;

R₃₃, R₆₅=are independently C, G or absent;

R₂₁, R₄₃, R₇₁=are independently C, G, U or absent;

R₃, R₆, R₁₃, R₂₂, R₃₂, R₃₅, R₃₆, R₆₁, R₆₃, R₆₄=are independently C, U or absent;

R₇, R₁₀, R₁₉, R₂₀, R₂₇, R₄₉, R₅₂=are independently G or absent;

R₅₄=G, U or absent;

R₂, R₄, R₈, R₁₆, R₂₃, R₃₀, R₃₁, R₃₈, R₃₉, R₅₀, R₅₃=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(ASN) (SEQ ID NO: 570),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asn is:

R₀, R₁₈=are absent

R₂₄, R₄₀, R₄₁, R₄₆, R₆₂=are independently A or absent;

R₅₉=A, C or absent;

R₁₄, R₅₆, R₆₆=are independently A, C, G or absent;

R₁₁, R₂₆, R₄₂, R₅₅=are independently A, C, U or absent;

R₁, R₉, R₁₂, R₁₅, R₃₄, R₃₇, R₄₈, R₅₁, R₆₇, R₆₈, R₆₉, R₇₀=are independently A, G or absent;

R₄₄, R₄₅, R₅₈=are independently A, G, U or absent;

R₅₇=A, U or absent;

R₅, R₂₈, R₆₀=are independently C or absent;

R₃₃, R₆₅=are independently C, G or absent;

R₁₇, R₂₁, R₂₉=are independently C, G, U or absent;

R₃, R₆, R₁₃, R₂₂, R₃₂, R₃₅, R₃₆, R₄₃, R₆₁, R₆₃, R₆₄, R₇₁=are independently C, U or absent;

R₇, R₁₀, R₁₉, R₂₀, R₂₅, R₂₇, R₄₉, R₅₂, R₇₂=are independently G or absent;

R₅₄=G, U or absent;

R₂, R₄, R₈, R₁₆, R₂₃, R₃₀, R₃₁, R₃₈, R₃₉, R₅₀, R₅₃=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Aspartate TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I ASP (SEQ ID NO: 571),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asp is:

R₀=absent

R₂₄, R₇₁=are independently A, C or absent;

R₃₃, R₄₆=are independently A, C, G or absent;

R₂, R₃, R₄, R₅, R₆, R₁₂, R₁₆, R₂₂, R₂₆, R₂₉, R₃₁, R₃₂, R₄₄, R₄₈, R₄₉, R₅₈, R₆₃, R₆₄, R₆₆, R₆₇, R₆₈, R₆₉=are independently N or absent;

R₁₃, R₂₁, R₃₄, R₄₁, R₅₇, R₆₅=are independently A, C, U or absent;

R₉, R₁₀, R₁₄, R₁₅, R₂₀, R₂₇, R₃₇, R₄₀, R₅₁, R₅₆, R₇₂=are independently A, G or absent;

R₇, R₂₅, R₄₂=are independently A, G, U or absent;

R₃₉=C or absent;

R₅₀, R₆₂=are independently C, G or absent;

R₃₀, R₄₃, R₄₅, R₅₅, R₇₀=are independently C, G, U or absent;

R₈, R₁₁, R₁₇, R₁₈, R₂₈, R₃₅, R₅₃, R₅₉, R₆₀, R₆₁=are independently C, U or absent;

R₁₉, R₅₂=are independently G or absent;

R₁=G, U or absent;

R₂₃, R₃₆, R₃₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(ASP) (SEQ ID NO: 572),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asp is:

R₀, R₁₇, R₁₈, R₂₃=are independently absent;

R₉, R₄₀=are independently A or absent;

R₂₄, R₇₁=are independently A, C or absent;

R₆₇, R₆₈=are independently A, C, G or absent;

R₂, R₆, R₆₆=are independently N or absent;

R₅₇, R₆₃=are independently A, C, U or absent;

R₁₀, R₁₄, R₂₇, R₃₃, R₃₇, R₄₄, R₄₆, R₅₁, R₅₆, R₆₄, R₇₂=are independently A, G or absent;

R₇, R₁₂, R₂₆, R₆₅=are independently A, U or absent;

R₃₉, R₆₁, R₆₂=are independently C or absent;

R₃, R₃₁, R₄₅, R₇₀=are independently C, G or absent;

R₄, R₅, R₂₉, R₄₃, R₅₅=are independently C, G, U or absent;

R₈, R₁₁, R₁₃, R₃₀, R₃₂, R₃₄, R₃₅, R₄₁, R₄₈, R₅₃, R₅₉, R₆₀=are independently C, U or absent;

R₁₈, R₁₉, R₂₀, R₂₅, R₄₂, R₅₀, R₅₂=are independently G or absent;

R₁, R₂₂, R₄₉, R₅₈, R₆₉=are independently G, U or absent;

R₁₆, R₂₁, R₂₈, R₃₆, R₃₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III ASP (SEQ ID NO: 573),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Asp is:

R₀, R₁₇, R₁₈, R₂₃=are absent

R₉, R₁₂, R₄₀, R₆₅, R₇₁=are independently A or absent;

R₂, R₂₄, R₅₇=are independently A, C or absent;

R₆, R₁₄, R₂₇, R₄₆, R₅₁, R₅₆, R₆₄, R₆₇, R₆₈=are independently A, G or absent;

R₃, R₃₁, R₃₅, R₃₉, R₆₁, R₆₂=are independently C or absent;

R₆₆=C, G or absent;

R₅, R₈, R₂₉, R₃₀, R₃₂, R₃₄, R₄₁, R₄₃, R₄₈, R₅₅, R₅₉, R₆₀, R₆₃=are independently C, U or absent;

R₁₀, R₁₅, R₁₉, R₂₀, R₂₅, R₃₃, R₃₇, R₄₂, R₄₄, R₄₅, R₄₉, R₅₀, R₅₂, R₆₉, R₇₀, R₇₂=are independently G or absent;

R₂₂, R₅₈=are independently G, U or absent;

R₁, R₄, R₇, R₁₁, R₁₃, R₁₆, R₂₁, R₂₆, R₂₈, R₃₆, R₃₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Cysteine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(CYS) (SEQ ID NO: 574),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Cys is:

R₀=absent

R₁₄, R₃₉, R₅₇=are independently A or absent;

R₄₁=A, C or absent;

R₁₀, R₁₅, R₂₇, R₃₃, R₆₂=are independently A, C, G or absent;

R₃, R₄, R₅, R₆, R₁₂, R₁₃, R₁₆, R₂₄, R₂₆, R₂₉, R₃₀, R₃₁, R₃₂, R₃₄, R₄₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₈, R₆₃, R₆₄, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₆₅=A, C, U or absent;

R₉, R₂₅, R₃₇, R₄₀, R₅₂, R₅₆=are independently A, G or absent;

R₇, R₂₀, R₅₁=are independently A, G, U or absent;

R₁₈, R₃₈, R₅₅=are independently C or absent;

R₂=C, G or absent;

R₂₁, R₂₈, R₄₃, R₅₀=are independently C, G, U or absent;

R₁, R₂₂, R₂₃, R₃₅, R₃₆, R₅₉, R₆₀, R₆₁, R₇₁, R₇₂=are independently C, U or absent;

R₁, R₁₉=are independently G or absent;

R₁₇=G, U or absent;

R₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(CYS) (SEQ ID NO: 575),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Cys is:

R₀, R₁₈, R₂₃=are absent;

R₁₄, R₂₄, R₂₆, R₂₉, R₃₉, R₄₁, R₄₅, R₅₇=are independently A or absent;

R₄₄=A, C or absent;

R₂₇, R₆₂=are independently A, C, G or absent;

R₁₆=A, C, G, U or absent;

R₃₀, R₇₀=are independently A, C, U or absent;

R₅, R₇, R₉, R₂₅, R₃₄, R₃₇, R₄₀, R₄₆, R₅₂, R₅₆, R₅₈, R₆₆=are independently A, G or absent;

R₂₀, R₅₁=are independently A, G, U or absent;

R₃₅, R₃₈, R₄₃, R₅₅, R₆₉=are independently C or absent;

R₂, R₄, R₁₅=are independently C, G or absent;

R₁₃=C, G, U or absent;

R₆, R₁₁, R₂₈, R₃₆, R₄₈, R₄₉, R₅₀, R₆₀, R₆₁, R₆₇, R₆₈, R₇₁, R₇₂=are independently C, U or absent;

R₁, R₃, R₁₀, R₁₉, R₃₃, R₆₃=are independently G or absent;

R₈, R₁₇, R₂₁, R₆₄=are independently G, U or absent;

R₁₂, R₂₂, R₃₁, R₃₂, R₄₂, R₅₃, R₅₄, R₆₅=are independently U or absent;

R₅₉=U, or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(CYS) (SEQ ID NO: 576),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Cys is:

R₀, R₁₈, R₂₃=are absent

R₁₄, R₂₄, R₂₆, R₂₉, R₃₄, R₃₉, R₄₁, R₄₅, R₅₇, R₅₈=are independently A or absent;

R₄₄, R₇₀=are independently A, C or absent;

R₆₂=A, C, G or absent;

R₁₆=N or absent;

R₅, R₇, R₉, R₂₀, R₄₀, R₄₆, R₅₁, R₅₂, R₅₆, R₆₆=are independently A, G or absent;

R₂₈, R₃₅, R₃₈, R₄₃, R₅₅, R₆₇, R₆₉=are independently C or absent;

R₄, R₁₃=are independently C, G or absent;

R₆, R₁₁, R₁₃, R₃₀, R₄₈, R₄₉, R₅₀, R₆₀, R₆₁, R₆₈, R₇₁, R₇₂=are independently C, U or absent;

R₁, R₂, R₃, R₁₀, R₁₉, R₂₅, R₂₇, R₃₃, R₃₇, R₆₃=are independently G or absent;

R₈, R₂₁, R₆₄=are independently G, U or absent;

R₁₂, R₁₇, R₂₂, R₃₁, R₃₂, R₃₆, R₄₂, R₅₃, R₅₄, R₅₉, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Glutamine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(GLN)(SEQ ID NO: 577),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gln is:

R₀, R₁₈=are absent;

R₁₄, R₂₄, R₅₇=are independently A or absent;

R₉, R₂₆, R₂₇, R₃₃, R₃₆=are independently A, C, G or absent;

R₂, R₄, R₅, R₆, R₁₂, R₁₃, R₁₆, R₂₁, R₂₂, R₂₅, R₂₉, R₃₀, R₃₁, R₃₂, R₃₄, R₄₁, R₄₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₁₇, R₂₃, R₄₃, R₆₅, R₇₁=are independently A, C, U or absent;

R₁₅, R₄₀, R₅₁, R₅₂=are independently A, G or absent;

R₁, R₇, R₇₂=are independently A, G, U or absent;

R₃, R₁₁, R₃₇, R₆₀, R₆₄=are independently C, G, U or absent;

R₂₈, R₃₅, R₅₅, R₅₉, R₆₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀=are independently G or absent;

R₃₉=G, U or absent;

R₈, R₃₆, R₃₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(GLN) (SEQ ID NO: 578),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gln is:

R₀, R₁₈, R₂₃=are absent

R₁₄, R₂₄, R₅₇=are independently A or absent;

R₁₇, R₇₁=are independently A, C or absent;

R₂₅, R₂₆, R₃₃, R₄₄, R₄₆, R₅₆, R₆₉=are independently A, C, G or absent;

R₄, R₅, R₁₂, R₂₂, R₂₉, R₃₀, R₄₈, R₄₉, R₆₃, R₆₇, R₆₈=are independently N or absent;

R₃₁, R₄₃, R₆₂, R₆₅, R₇₀=are independently A, C, U or absent;

R₁₅, R₂₇, R₃₄, R₄₀, R₄₁, R₅₁, R₅₂=are independently A, G or absent;

R₂, R₇, R₂₁, R₄₅, R₅₀, R₅₈, R₆₆, R₇₂=are independently A, G, U or absent;

R₃, R₁₃, R₃₂, R₃₇, R₄₂, R₆₀, R₆₄=are independently C, G, U or absent;

R₆, R₁₁, R₂₈, R₃₅, R₅₅, R₅₉, R₆₁=are independently C, U or absent;

R₉, R₁₀, R₁₉, R₂₀=are independently G or absent;

R₁, R₁₆, R₃₉=are independently G, U or absent;

R₈, R₃₆, R₃₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(GLN) (SEQ ID NO: 579),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gln is:

R₀, R₁₈, R₂₃=are absent

R₁₄, R₂₄, R₄₁, R₅₇=are independently A or absent;

R₁₇, R₇₁=are independently A, C or absent;

R₅, R₂₅, R₂₆, R₄₆, R₅₆, R₆₉=are independently A, C, G or absent;

R₄, R₂₂, R₂₉, R₃₀, R₄₈, R₄₉, R₆₃, R₆₈=are independently N or absent;

R₄₃, R₆₂, R₆₅, R₇₀=are independently A, C, U or absent;

R₁₅, R₂₇, R₃₃, R₃₄, R₄₀, R₅₁, R₅₂=are independently A, G or absent;

R₂, R₇, R₁₂, R₄₅, R₅₀, R₅₈, R₆₆=are independently A, G, U or absent;

R₃₁=A, U or absent;

R₃₂, R₄₄, R₆₀=are independently C, G or absent;

R₃, R₁₃, R₃₇, R₄₂, R₆₄, R₆₇=are independently C, G, U or absent;

R₆, R₁₁, R₂₈, R₃₅, R₅₅, R₅₉, R₆₁=are independently C, U or absent;

R₉, R₁₀, R₁₉, R₂₀=are independently G or absent;

R₁, R₂₁, R₃₉, R₇₂=are independently G, U or absent;

R₈, R₁₆, R₃₆, R₃₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Glutamate TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(GLU) (SEQ ID NO: 580),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Glu is:

R₀=absent;

R₃₄, R₄₃, R₆₈, R₆₉=are independently A, C, G or absent;

R₁, R₂, R₅, R₆, R₉, R₁₂, R₁₆, R₂₀, R₂₁, R₂₆, R₂₇, R₂₉, R₃₀, R₃₁, R₃₂, R₃₃, R₄₁, R₄₄, R₄₅, R₄₆, R₄₈, R₅₀, R₅₁, R₅₈, R₆₃, R₆₄, R₆₅, R₆₆, R₇₀, R₇₁=are independently N or absent;

R₁₃, R₁₇, R₂₃, R₆₁=are independently A, C, U or absent;

R₁₀, R₁₄, R₂₄, R₄₀, R₅₂, R₅₆=are independently A, G or absent;

R₇, R₁₅, R₂₅, R₆₇, R₇₂=are independently A, G, U or absent;

R₁₁, R₅₇=are independently A, U or absent;

R₃₉=C, G or absent;

R₃, R₄, R₂₂, R₄₂, R₄₉, R₅₅, R₆₂=are independently C, G, U or absent;

R₁₈, R₂₈, R₃₅, R₃₇, R₅₃, R₅₉, R₆₀=are independently C, U or absent;

R₁₉=G or absent;

R₈, R₃₆, R₃₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(GLU) (SEQ ID NO: 581),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Glu is:

R₀, R₁₈, R₂₃=are absent

R₁₇, R₄₀=are independently A or absent;

R₂₆, R₂₇, R₃₄, R₄₃, R₆₈, R₆₉, R₇₁=are independently A, C, G or absent;

R₁, R₂, R₅, R₁₂, R₂₁, R₃₁, R₃₃, R₄₁, R₄₅, R₄₈, R₅₁, R₅₈, R₆₆, R₇₀=are independently N or absent;

R₄₄, R₆₁=are independently A, C, U or absent;

R₉, R₁₄, R₂₄, R₂₅, R₅₂, R₅₆, R₆₃=are independently A, G or absent;

R₇, R₁₅, R₄₆, R₅₀, R₆₇, R₇₂=are independently A, G, U or absent;

R₂₉, R₅₇=are independently A, U or absent;

R₆₀=C or absent;

R₃₉=C, G or absent;

R₃, R₆, R₂₀, R₃₀, R₃₂, R₄₂, R₅₅, R₆₂, R₆₅=are independently C, G, U or absent;

R₄, R₈, R₁₆, R₂₈, R₃₅, R₃₇, R₄₉, R₅₃, R₅₉=are independently C, U or absent;

R₁₀, R₁₉=are independently G or absent;

R₂₂, R₆₄=are independently G, U or absent;

R₁₁, R₁₃, R₃₆, R₃₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(GLU) (SEQ ID NO: 582),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Glu is:

R₀, R₁₇, R₁₈, R₂₃=are absent

R₁₄, R₂₇, R₄₀, R₇₁=are independently A or absent;

R₄₄=A, C or absent;

R₄₃=A, C, G or absent;

R₁, R₃₁, R₃₃, R₄₅, R₅₁, R₆₆=are independently N or absent;

R₂₁, R₄₁=are independently A, C, U or absent;

R₇, R₂₄, R₂₅, R₅₀, R₅₂, R₅₆, R₆₃, R₆₈, R₇₀=are independently A, G or absent;

R₅, R₄₆=are independently A, G, U or absent;

R₂₉, R₅₇, R₆₇, R₇₂=are independently A, U or absent;

R₂, R₃₉, R₆₀=are independently C or absent;

R₃, R₁₂, R₂₀, R₂₆, R₃₄, R₆₉=are independently C, G or absent;

R₆, R₃₀, R₄₂, R₄₈, R₆₅=are independently C, G, U or absent;

R₄, R₁₆, R₂₈, R₃₅, R₃₇, R₄₉, R₅₃, R₅₅, R₅₈, R₆₁, R₆₂=are independently C, U or absent;

R₉, R₁₀, R₁₉, R₆₄=are independently G or absent;

R₁₅, R₂₂, R₃₂=are independently G, U or absent;

R₈, R₁₁, R₁₃, R₃₆, R₃₈, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Glycine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(GLY) (SEQ ID NO: 583),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gly is:

R₀=absent;

R₂₄=A or absent;

R₃, R₉, R₄₀, R₅₀, R₅₁=are independently A, C, G or absent;

R₄, R₅, R₆, R₇, R₁₂, R₁₆, R₂₁, R₂₂, R₂₆, R₂₉, R₃₀, R₃₁, R₃₂, R₃₃, R₃₄, R₄₁, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₈, R₆₃, R₆₄, R₆₅, R₆₆, R₆₇, R₆₈=are independently N or absent;

R₅₉=A, C, U or absent;

R₁, R₁₀, R₁₄, R₁₅, R₂₇, R₅₆=are independently A, G or absent;

R₂₀, R₂₅=are independently A, G, U or absent;

R₅₇, R₇₂=are independently A, U or absent;

R₃₈, R₃₉, R₆₀=are independently C or absent;

R₅₂=C, G or absent;

R₂, R₁₉, R₃₇, R₅₄, R₅₅, R₆₁, R₆₂, R₆₉, R₇₀=are independently C, G, U or absent;

R₁₁, R₁₃, R₁₇, R₂₈, R₃₅, R₃₆, R₇₁=are independently C, U or absent;

R₈, R₁₈, R₂₃, R₅₃=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(GLY) (SEQ ID NO: 584),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gly is:

R₀, R₁₈, R₂₃=are absent

R₂₄, R₂₇, R₄₀, R₇₂=are independently A or absent;

R₂₆=A, C or absent;

R₃, R₇, R₆₈=are independently A, C, G or absent;

R₅, R₃₀, R₄₁, R₄₂, R₄₄, R₄₉, R₆₇=are independently A, C, G, U or absent;

R₃₁, R₃₂, R₃₄=are independently A, C, U or absent;

R₉, R₁₀, R₁₄, R₁₅, R₃₃, R₅₀, R₅₆=are independently A, G or absent;

R₁₂, R₁₆, R₂₂, R₂₅, R₂₉, R₄₆=are independently A, G, U or absent;

R₅₇=A, U or absent;

R₁₇, R₃₈, R₃₉, R₆₀, R₆₁, R₇₁=are independently C or absent;

R₆, R₅₂, R₆₄, R₆₆=are independently C, G or absent;

R₂, R₄, R₃₇, R₄₈, R₅₅, R₆₅=are independently C, G, U or absent;

R₁₃, R₃₅, R₄₃, R₆₂, R₆₉=are independently C, U or absent;

R₁, R₁₉, R₂₀, R₅₁, R₇₀=are independently G or absent;

R₂₁, R₄₅, R₆₃=are independently G, U or absent;

R₈, R₁₁, R₂₈, R₃₆, R₅₃, R₅₄, R₅₈, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(GLY) (SEQ ID NO: 585),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Gly is:

R₀, R₁₈, R₂₃=are absent

R₂₄, R₂₇, R₄₀, R₇₂=are independently A or absent;

R₂₆=A, C or absent;

R₃, R₇, R₄₉, R₆₈=are independently A, C, G or absent;

R₅, R₃₀, R₄₁, R₄₄, R₆₇=are independently N or absent;

R₃₁, R₃₂, R₃₄=are independently A, C, U or absent;

R₉, R₁₀, R₁₄, R₁₅, R₃₃, R₅₀, R₅₆=are independently A, G or absent;

R₁₂, R₂₅, R₂₉, R₄₂, R₄₆=are independently A, G, U or absent;

R₁₆, R₅₇=are independently A, U or absent;

R₁₇, R₃₈, R₃₉, R₆₀, R₆₁, R₇₁=are independently C or absent;

R₆, R₅₂, R₆₄, R₆₆=are independently C, G or absent;

R₃₇, R₄₈, R₆₅=are independently C, G, U or absent;

R₂, R₄, R₁₃, R₃₅, R₄₃, R₅₅, R₆₂, R₆₉=are independently C, U or absent;

R₁, R₁₉, R₂₀, R₅₁, R₇₀=are independently G or absent;

R₂₁, R₂₂, R₄₅, R₆₃=are independently G, U or absent;

R₈, R₁₁, R₂₈, R₃₆, R₅₃, R₅₄, R₅₈, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Histidine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(HIS) (SEQ ID NO: 586),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for His is:

R₂₃=absent;

R₁₄, R₂₄, R₅₇=are independently A or absent;

R₇₂=A, C or absent;

R₉, R₂₇, R₄₃, R₄₈, R₆₉=are independently A, C, G or absent;

R₃, R₄, R₅, R₆, R₁₂, R₂₅, R₂₆, R₂₉, R₃₀, R₃₁, R₃₄, R₄₂, R₄₅, R₄₆, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₆, R₆₇, R₆₈=are independently N or absent;

R₁₃, R₂₁, R₄₁, R₄₄, R₆₅=are independently A, C, U or absent;

R₄₀, R₅₁, R₅₆, R₇₀=are independently A, G or absent;

R₇, R₃₂=are independently A, G, U or absent;

R₅₅, R₆₀=are independently C or absent;

R₁₁, R₁₆, R₃₃, R₆₄=are independently C, G, U or absent;

R₂, R₁₇, R₂₂, R₂₈, R₃₅, R₅₃, R₅₉, R₆₁, R₇₁=are independently C, U or absent;

R₁, R₁₀, R₁₅, R₁₉, R₂₀, R₃₇, R₃₉, R₅₂=are independently G or absent;

R₀=G, U or absent;

R₈, R₁₈, R₃₆, R₃₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(HIS) (SEQ ID NO: 587),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for His is:

R₀, R₁₇, R₁₈, R₂₃=are absent;

R₇, R₁₂, R₁₄, R₂₄, R₂₇, R₄₅, R₅₇, R₅₈, R₆₃, R₆₇, R₇₂=are independently A or absent;

R₃=A, C, U or absent;

R₄, R₄₃, R₅₆, R₇₀=are independently A, G or absent;

R₄₉=A, U or absent;

R₂, R₂₈, R₃₀, R₄₁, R₄₂, R₄₄, R₄₈, R₅₅, R₆₀, R₆₆, R₇₁=are independently C or absent;

R₂₅=C, G or absent;

R₉=C, G, U or absent;

R₈, R₁₃, R₂₆, R₃₃, R₃₅, R₅₀, R₅₃, R₆₁, R₆₈=are independently C, U or absent;

R₁, R₆, R₁₀, R₁₅, R₁₉, R₂₀, R₃₂, R₃₄, R₃₇, R₃₉, R₄₀, R₄₆, R₅₁, R₅₂, R₆₂, R₆₄, R₆₉=are independently G or absent;

R₁₆=G, U or absent;

R₅, R₁₁, R₂₁, R₂₂, R₂₉, R₃₁, R₃₆, R₃₈, R₅₄, R₅₉, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(HIS) (SEQ ID NO: 588),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for His is:

R₀, R₁₇, R₁₈, R₂₃=are absent

R₇, R₁₂, R₁₄, R₂₄, R₂₇, R₄₅, R₅₇, R₅₈, R₆₃, R₆₇, R₇₂=are independently A or absent;

R₃=A, C or absent;

R₄, R₄₃, R₅₆, R₇₀=are independently A, G or absent;

R₄₉=A, U or absent;

R₂, R₂₈, R₃₀, R₄₁, R₄₂, R₄₄, R₄₈, R₅₅, R₆₀, R₆₆, R₇₁=are independently C or absent;

R₈, R₉, R₂₆, R₃₃, R₃₅, R₅₀, R₆₁, R₆₈=are independently C, U or absent;

R₁, R₆, R₁₀, R₁₅, R₁₉, R₂₀, R₂₅, R₃₂, R₃₄, R₃₇, R₃₉, R₄₀, R₄₆, R₅₁, R₅₂, R₆₂, R₆₄, R₆₉=are independently G or absent;

R₅, R₁₁, R₁₃, R₁₆, R₂₁, R₂₂, R₂₉, R₃₁, R₃₆, R₃₈, R₅₃, R₅₄, R₅₉, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Isoleucine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(ILE) (SEQ ID NO: 589),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ile is:

R₂₃=absent;

R₃₈, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₁, R₂₆=are independently A, C, G or absent;

R₀, R₃, R₄, R₆, R₁₆, R₃₁, R₃₂, R₃₄, R₃₇, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₅₉, R₆₂, R₆₃, R₆₄, R₆₆, R₆₇, R₆₈, R₆₉=are independently N or absent;

R₂₂, R₆₁, R₆₅=are independently A, C, U or absent;

R₉, R₁₄, R₁₅, R₂₄, R₂₇, R₄₀=are independently A, G or absent;

R₇, R₂₅, R₂₉, R₅₁, R₅₆=are independently A, G, U or absent;

R₁₈, R₅₄=are independently A, U or absent;

R₆₀=C or absent;

R₂, R₅₂, R₇₀=are independently C, G or absent;

R₅, R₁₂, R₂₁, R₃₀, R₃₃, R₇₁=are independently C, G, U or absent;

R₁₁, R₁₃, R₁₇, R₂₈, R₃₅, R₅₃, R₅₅=are independently C, U or absent;

R₁₀, R₁₉, R₂₀=are independently G or absent;

R₈, R₃₆, R₃₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II ILE (SEQ ID NO: 590),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ile is:

R₀, R₁₈, R₂₃=are absent

R₂₄, R₃₈, R₄₀, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₂₆, R₆₅=are independently A, C or absent;

R₅₈, R₅₉, R₆₇=are independently N or absent;

R₂₂=A, C, U or absent;

R₆, R₉, R₁₄, R₁₅, R₂₉, R₃₄, R₄₃, R₄₆, R₄₈, R₅₀, R₅₁, R₆₃, R₆₉=are independently A, G or absent;

R₃₇, R₅₆=are independently A, G, U or absent;

R₅₄=A, U or absent;

R₂₈, R₃₅, R₆₀, R₆₂, R₇₁=are independently C or absent;

R₂, R₅₂, R₇₀=are independently C, G or absent;

R₅=C, G, U or absent;

R₃, R₄, R₁₁, R₁₃, R₁₇, R₂₁, R₃₀, R₄₂, R₄₄, R₄₅, R₄₉, R₅₃, R₅₅, R₆₁, R₆₄, R₆₆=are independently C, U or absent;

R₁, R₁₀, R₁₉, R₂₀, R₂₅, R₂₇, R₃₁, R₆₈=are independently G or absent;

R₇, R₁₂, R₃₂=are independently G, U or absent;

R₈, R₁₆, R₃₃, R₃₆, R₃₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III I_(E)(SEQ ID NO: 591),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ile is:

R₀, R₁₈, R₂₃=are absent

R₁₄, R₂₄, R₃₈, R₄₀, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₂₆, R₆₅=are independently A, C or absent;

R₂₂, R₅₉=are independently A, C, U or absent;

R₆, R₉, R₁₅, R₃₄, R₄₃, R₄₆, R₅₁, R₅₆, R₆₃, R₆₉=are independently A, G or absent;

R₃₇=A, G, U or absent;

R₁₃, R₂₈, R₃₅, R₄₄, R₅₅, R₆₀, R₆₂, R₇₁=are independently C or absent;

R₂, R₅, R₇₀=are independently C, G or absent;

R₅₈, R₆₇=are independently C, G, U or absent;

R₃, R₄, R₁₁, R₁₇, R₂₁, R₃₀, R₄₂, R₄₅, R₄₉, R₅₃, R₆₁, R₆₄, R₆₆=are independently C, U or absent;

R₁, R₁₀, R₁₉, R₂₀, R₂₅, R₂₇, R₂₉, R₃₁, R₃₂, R₄₈, R₅₀, R₅₂, R₆₈=are independently G or absent;

R₇, R₁₂=are independently G, U or absent;

R₈, R₁₆, R₃₃, R₃₆, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Methionine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(MET) (SEQ ID NO: 592),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Met is:

R₀, R₂₃=are absent;

R₁₄, R₃₈, R₄₀, R₅₇=are independently A or absent;

R₆₀=A, C or absent;

R₃₃, R₄₈, R₇₀=are independently A, C, G or absent;

R₁, R₃, R₄, R₅, R₆, R₁₁, R₁₂, R₁₆, R₁₇, R₂₁, R₂₂, R₂₆, R₂₇, R₂₉, R₃₀, R₃₁, R₃₂, R₄₂, R₄₄, R₄₅, R₄₆, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₆, R₆₇, R₆₈, R₆₉, R₇₁=are independently N or absent;

R₁₈, R₃₅, R₄₁, R₅₉, R₆₅=are independently A, C, U or absent;

R₉, R₁₅, R₅₁=are independently A, G or absent;

R₇, R₂₄, R₂₅, R₃₄, R₅₃, R₅₆=are independently A, G, U or absent;

R₇₂=A, U or absent;

R₃₇=C or absent;

R₁₀, R₅₅=are independently C, G or absent;

R₂, R₁₃, R₂₈, R₄₃, R₆₄=are independently C, G, U or absent;

R₃₆, R₆₁=are independently C, U or absent;

R₁₉, R₂₀, R₅₂=are independently G or absent;

R₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(MET)(SEQ ID NO: 593),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Met is:

R₀, R₁₈, R₂₂, R₂₃=are absent

R₁₄, R₂₄, R₃₈, R₄₀, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₅₉, R₆₀, R₆₂, R₆₅=are independently A, C or absent;

R₆, R₄₅, R₆₇=are independently A, C, G or absent;

R₄=N or absent;

R₂₁, R₄₂=are independently A, C, U or absent;

R₁, R₉, R₂₇, R₂₉, R₃₂, R₄₆, R₅₁=are independently A, G or absent;

R₁₇, R₄₉, R₅₃, R₅₆, R₅₈=are independently A, G, U or absent;

R₆₃=A, U or absent;

R₃, R₁₃, R₃₇=are independently C or absent;

R₄₈, R₅₅, R₆₄, R₇₀=are independently C, G or absent;

R₂, R₅, R₆₆, R₆₈=are independently C, G, U or absent;

R₁, R₁₆, R₂₆, R₂₈, R₃₀, R₃₁, R₃₅, R₃₆, R₄₃, R₄₄, R₆₁, R₇₁=are independently C, U or absent;

R₁₀, R₁₂, R₁₅, R₁₉, R₂₀, R₂₅, R₃₃, R₅₂, R₆₉=are independently G or absent;

R₇, R₃₄, R₅₀=are independently G, U or absent;

R₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(MET)(SEQ ID NO: 594),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Met is:

R₀, R₁₈, R₂₂, R₂₃=are absent

R₁₄, R₂₄, R₃₈, R₄₀, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₅₉, R₆₂, R₆₅=are independently A, C or absent;

R₆, R₆₇=are independently A, C, G or absent;

R₄, R₂₁=are independently A, C, U or absent;

R₁, R₉, R₂₇, R₂₉, R₃₂, R₄₅, R₄₆, R₅₁=are independently A, G or absent;

R₁₇, R₅₆, R₅₈=are independently A, G, U or absent;

R₄₉, R₅₃, R₆₃=are independently A, U or absent;

R₃, R₁₃, R₂₆, R₃₇, R₄₃, R₆₀=are independently C or absent;

R₂, R₄₈, R₅₅, R₆₄, R₇₀=are independently C, G or absent;

R₅, R₆₆=are independently C, G, U or absent;

R₁, R₁₆, R₂₈, R₃₀, R₃₁, R₃₅, R₃₆, R₄₂, R₄₄, R₆₁, R₇₁=are independently C, U or absent;

R₁₀, R₁₂, R₁₅, R₁₉, R₂₀, R₂₅, R₃₃, R₅₂, R₆₉=are independently G or absent;

R₇, R₃₄, R₅₀, R₆₈=are independently G, U or absent;

R₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Leucine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(LEU) (SEQ ID NO: 595),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Leu is:

R₀=absent;

R₃₈, R₅₇=are independently A or absent;

R₆₀=A, C or absent;

R₁, R₁₃, R₂₇, R₄₈, R₅₁, R₅₆=are independently A, C, G or absent;

R₂, R₃, R₄, R₅, R₆, R₇, R₉, R₁₀, R₁₁, R₁₂, R₁₆, R₂₃, R₂₆, R₂₈, R₂₉, R₃₀, R₃₁, R₃₂, R₃₃, R₃₄, R₃₇, R₄₁, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₅, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₁₇, R₁₈, R₂₁, R₂₂, R₂₅, R₃₅, R₅₅=are independently A, C, U or absent;

R₁₄, R₁₅, R₃₉, R₇₂=are independently A, G or absent;

R₂₄, R₄₀=are independently A, G, U or absent;

R₅₂, R₆₁, R₆₄, R₇₁=are independently C, G, U or absent;

R₃₆, R₅₃, R₅₉=are independently C, U or absent;

R₁₉=G or absent;

R₂₀=G, U or absent;

R₈, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(LEU) (SEQ ID NO: 596),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Leu is:

R₀=absent

R₃₈, R₅₇, R₇₂=are independently A or absent;

R₆₀=A, C or absent;

R₄, R₅, R₄₈, R₅₀, R₅₆, R₆₉=are independently A, C, G or absent;

R₆, R₃₃, R₄₁, R₄₃, R₄₆, R₄₉, R₅₈, R₆₃, R₆₆, R₇₀=are independently N or absent;

R₁₁, R₁₂, R₁₇, R₂₁, R₂₂, R₂₈, R₃₁, R₃₇, R₄₄, R₅₅=are independently A, C, U or absent;

R₁, R₉, R₁₄, R₁₅, R₂₄, R₂₇, R₃₄, R₃₉=are independently A, G or absent;

R₇, R₂₉, R₃₂, R₄₀, R₄₅=are independently A, G, U or absent;

R₂₅=A, U or absent;

R₁₃=C, G or absent;

R₂, R₃, R₁₆, R₂₆, R₃₀, R₅₂, R₆₂, R₆₄, R₆₅, R₆₇, R₆₈=are independently C, G, U or absent;

R₁₈, R₃₅, R₄₂, R₅₃, R₅₉, R₆₁, R₇₁=are independently C, U or absent;

R₁₉, R₅₁=are independently G or absent;

R₁₀, R₂₀=are independently G, U or absent;

R₈, R₂₃, R₃₆, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(LEU) (SEQ ID NO: 597),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Leu is:

R₀=absent

R₃₈, R₅₇, R₇₂=are independently A or absent;

R₆₀=A, C or absent;

R₄, R₅, R₄₈, R₅₀, R₅₆, R₅₈, R₆₉=are independently A, C, G or absent;

R₆, R₃₃, R₄₃, R₄₆, R₄₉, R₆₃, R₆₆, R₇₀=are independently N or absent;

R₁₁, R₁₂, R₁₇, R₂₁, R₂₂, R₂₈, R₃₁, R₃₇, R₄₁, R₄₄, R₅₅=are independently A, C, U or absent;

R₁, R₉, R₁₄, R₁₅, R₂₄, R₂₇, R₃₄, R₃₉=are independently A, G or absent;

R₇, R₂₉, R₃₂, R₄₀, R₄₅=are independently A, G, U or absent;

R₂₅=A, U or absent;

R₁₃=C, G or absent;

R₂, R₃, R₁₆, R₃₀, R₅₂, R₆₂, R₆₄, R₆₇, R₆₈=are independently C, G, U or absent;

R₁₈, R₃₅, R₄₂, R₅₃, R₅₉, R₆₁, R₆₅, R₇₁=are independently C, U or absent;

R₁₉, R₅₁=are independently G or absent;

R₁₀, R₂₀, R₂₆=are independently G, U or absent;

R₈, R₂₃, R₃₆, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Lysine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(LYS) (SEQ ID NO: 598),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Lys is:

R₀=absent

R₁₄=A or absent;

R₄₀, R₄₁=are independently A, C or absent;

R₃₄, R₄₃, R₅₁=are independently A, C, G or absent;

R₁, R₂, R₃, R₄, R₅, R₆, R₇, R₁₁, R₁₂, R₁₆, R₂₁, R₂₆, R₃₀, R₃₁, R₃₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₅, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₁₃, R₁₇, R₅₉, R₇₁=are independently A, C, U or absent;

R₉, R₁₅, R₁₉, R₂₀, R₂₅, R₂₇, R₅₂, R₅₆=are independently A, G or absent;

R₂₄, R₂₉, R₇₂=are independently A, G, U or absent;

R₁₈, R₅₇=are independently A, U or absent;

R₁₀, R₃₃=are independently C, G or absent;

R₄₂, R₆₁, R₆₄=are independently C, G, U or absent;

R₂₈, R₃₅, R₃₆, R₃₇, R₅₃, R₅₅, R₆₀=are independently C, U or absent;

R₈, R₂₂, R₂₃, R₃₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(LYS) (SEQ ID NO: 599),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Lys is:

R₀, R₁₈, R₂₃=are absent

R₁₄=A or absent;

R₄₀, R₄₁, R₄₃=are independently A, C or absent;

R₃, R₇=are independently A, C, G or absent;

R₁, R₆, R₁₁, R₃₁, R₄₅, R₄₈, R₄₉, R₆₃, R₆₅, R₆₆, R₆₈=are independently N or absent;

R₂, R₁₂, R₁₃, R₁₇, R₄₄, R₆₇, R₇₁=are independently A, C, U or absent;

R₉, R₁₅, R₁₉, R₂₀, R₂₅, R₂₇, R₃₄, R₅₀, R₅₂, R₅₆, R₇₀, R₇₂=are independently A, G or absent;

R₅, R₂₄, R₂₆, R₂₉, R₃₂, R₄₆, R₆₉=are independently A, G, U or absent;

R₅₇=A, U or absent;

R₁₀, R₆₁=are independently C, G or absent;

R₄, R₁₆, R₂₁, R₃₀, R₅₈, R₆₄=are independently C, G, U or absent;

R₂₈, R₃₅, R₃₆, R₃₇, R₄₂, R₅₃, R₅₅, R₅₉, R₆₀, R₆₂=are independently C, U or absent;

R₃₃, R₅₁=are independently G or absent;

R₈=G, U or absent;

R₂₂, R₃₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(LYS) (SEQ ID NO: 600),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Lys is:

R₀, R₁₈, R₂₃=absent

R₉, R₁₄, R₃₄, R₄₁=are independently A or absent;

R₄₀=A, C or absent;

R₁, R₃, R₇, R₃₁=are independently A, C, G or absent;

R₄₈, R₆₅, R₆₈=are independently N or absent;

R₂, R₁₃, R₁₇, R₄₄, R₆₃, R₆₆=are independently A, C, U or absent;

R₅, R₁₅, R₁₉, R₂₀, R₂₅, R₂₇, R₂₉, R₅₀, R₅₂, R₅₆, R₇₀, R₇₂=are independently A, G or absent;

R₆, R₂₄, R₃₂, R₄₉=are independently A, G, U or absent;

R₁₂, R₂₆, R₄₆, R₅₇=are independently A, U or absent;

R₁₁, R₂₈, R₃₅, R₄₃=are independently C or absent;

R₁₀, R₄₅, R₆₁=are independently C, G or absent;

R₄, R₂₁, R₆₄=are independently C, G, U or absent;

R₃₇, R₅₃, R₅₅, R₅₉, R₆₀, R₆₂, R₆₇, R₇₁=are independently C, U or absent;

R₃₃, R₅₁=are independently G or absent;

R₈, R₃₀, R₅₈, R₆₉=are independently G, U or absent;

R₁₆, R₂₂, R₃₆, R₃₈, R₃₉, R₄₂, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Phenylalanine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I PHE (SEQ ID NO: 601),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Phe is:

R₀, R₂₃=are absent

R₉, R₁₄, R₃₈, R₃₉, R₅₇, R₇₂=are independently A or absent;

R₇₁=A, C or absent;

R₄₁, R₇₀=are independently A, C, G or absent;

R₄, R₅, R₆, R₃₀, R₃₁, R₃₂, R₃₄, R₄₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₈, R₆₂, R₆₃, R₆₆, R₆₇, R₆₈, R₆₉=are independently N or absent;

R₁₆, R₆₁, R₆₅=are independently A, C, U or absent;

R₁₅, R₂₆, R₂₇, R₂₉, R₄₀, R₅₆=are independently A, G or absent;

R₇, R₅₁=are independently A, G, U or absent;

R₂₂, R₂₄=are independently A, U or absent;

R₅₅, R₆₀=are independently C or absent;

R₂, R₃, R₂₁, R₃₃, R₄₃, R₅₀, R₆₄=are independently C, G, U or absent;

R₁₁, R₁₂, R₁₃, R₁₇, R₂₈, R₃₅, R₃₆, R₅₉=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₂₅, R₃₇, R₅₂=are independently G or absent;

R₁=G, U or absent;

R₈, R₁₈, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II PHE (SEQ ID NO: 602),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Phe is:

R₀, R₁₈, R₂₃=absent

R₁₄, R₂₄, R₃₈, R₃₉, R₅₇, R₇₂=are independently A or absent;

R₄₆, R₇₁=are independently A, C or absent;

R₄, R₇₀=are independently A, C, G or absent;

R₄₅=A, C, U or absent;

R₆, R₇, R₁₅, R₂₆, R₂₇, R₃₂, R₃₄, R₄₀, R₄₁, R₅₆, R₆₉=are independently A, G or absent;

R₂₉=A, G, U or absent;

R₅, R₉, R₆₇=are independently A, U or absent;

R₃₅, R₄₉, R₅₅, R₆₀=are independently C or absent;

R₂₁, R₄₃, R₆₂=are independently C, G or absent;

R₂, R₃₃, R₆₈=are independently C, G, U or absent;

R₃, R₁₁, R₁₂, R₁₃, R₂₈, R₃₀, R₃₆, R₄₂, R₄₄, R₄₈, R₅₈, R₅₉, R₆₁, R₆₆=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₂₅, R₃₇, R₅₁, R₅₂, R₆₃, R₆₄=are independently G or absent;

R₁, R₃₁, R₅₀=are independently G, U or absent;

R₈, R₁₆, R₁₇, R₂₂, R₅₃, R₅₄, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III PHE (SEQ ID NO: 603),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Phe is:

R₀, R₁₈, R₂₂, R₂₃=absent

R₅, R₇, R₁₄, R₂₄, R₂₆, R₃₂, R₃₄, R₃₈, R₃₉, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₄₆=A, C or absent;

R₇₀=A, C, G or absent;

R₄, R₆, R₁₅, R₅₆, R₆₉=are independently A, G or absent;

R₉, R₄₅=are independently A, U or absent;

R₂, R₁₁, R₁₃, R₃₅, R₄₃, R₄₉, R₅₅, R₆₀, R₆₈, R₇₁=are independently C or absent;

R₃₃=C, G or absent;

R₃, R₂₈, R₃₆, R₄₈, R₅₈, R₅₉, R₆₁=are independently C, U or absent;

R₁, R₁₀, R₁₉, R₂₀, R₂₁, R₂₅, R₂₇, R₂₉, R₃₇, R₄₀, R₅₁, R₅₂, R₆₂, R₆₃, R₆₄=are independently G or absent;

R₈, R₁₂, R₁₆, R₁₇, R₃₀, R₃₁, R₄₂, R₄₄, R₅₀, R₅₃, R₅₄, R₆₅, R₆₆, R₆₇=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Proline TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(PRO) (SEQ ID NO: 604),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Pro is:

R₀=absent

R₁₄, R₅₇=are independently A or absent;

R₇₀, R₇₂=are independently A, C or absent;

R₉, R₂₆, R₂₇=are independently A, C, G or absent;

R₄, R₅, R₆, R₁₆, R₂₁, R₂₉, R₃₀, R₃₁, R₃₂, R₃₃, R₃₄, R₃₇, R₄₁, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₆₁, R₆₂, R₆₃, R₆₄, R₆₆, R₆₇, R₆₈=are independently N or absent;

R₃₅, R₆₅=are independently A, C, U or absent;

R₂₄, R₄₀, R₅₆=are independently A, G or absent;

R₇, R₂₅, R₅₁=are independently A, G, U or absent;

R₅₅, R₆₀=are independently C or absent;

R₁, R₃, R₇₁=are independently C, G or absent;

R₁₁, R₁₂, R₂₀, R₆₉=are independently C, G, U or absent;

R₁₃, R₁₇, R₁₈, R₂₂, R₂₃, R₂₈, R₅₉=are independently C, U or absent;

R₁₀, R₁₅, R₁₉, R₃₈, R₃₉, R₅₂=are independently G or absent;

R₂=are independently G, U or absent;

R₈, R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(PRO) (SEQ ID NO: 605),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Pro is:

R₀, R₁₇, R₁₈, R₂₂, R₂₃=absent;

R₁₄, R₄₅, R₅₆, R₅₇, R₅₈, R₆₅, R₆₈=are independently A or absent;

R₆₁=A, C, G or absent;

R₄₃=N or absent;

R₃₇=A, C, U or absent;

R₂₄, R₂₇, R₃₃, R₄₀, R₄₄, R₆₃=are independently A, G or absent;

R₃, R₁₂, R₃₀, R₃₂, R₄₈, R₅₅, R₆₀, R₇₀, R₇₁, R₇₂=are independently C or absent;

R₅, R₃₄, R₄₂, R₆₆=are independently C, G or absent;

R₂₀=C, G, U or absent;

R₃₅, R₄₁, R₄₉, R₆₂=are independently C, U or absent;

R₁, R₂, R₆, R₉, R₁₀, R₁₅, R₁₉, R₂₆, R₃₈, R₃₉, R₄₆, R₅₀, R₅₁, R₅₂, R₆₄, R₆₇, R₆₉=are independently G or absent;

R₁₁, R₁₆=are independently G, U or absent;

R₄, R₇, R₈, R₁₃, R₂₁, R₂₅, R₂₈, R₂₉, R₃₁, R₃₆, R₅₃, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(PRO) (SEQ ID NO: 606),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Pro is:

R₀, R₁₇, R₁₈, R₂₂, R₂₃=absent

R₁₄, R₄₅, R₅₆, R₅₇, R₅₈, R₆₅, R₆₈=are independently A or absent;

R₃₇=A, C, U or absent;

R₂₄, R₂₇, R₄₀=are independently A, G or absent;

R₃, R₅, R₁₂, R₃₀, R₃₂, R₄₈, R₄₉, R₅₅, R₆₀, R₆₁, R₆₂, R₆₆, R₇₀, R₇₁, R₇₂=are independently C or absent;

R₃₄, R₄₂=are independently C, G or absent;

R₄₃=C, G, U or absent;

R₄₁=C, U or absent;

R₁, R₂, R₆, R₉, R₁₀, R₁₅, R₁₉, R₂₀, R₂₆, R₃₃, R₃₈, R₃₉, R₄₄, R₄₆, R₅₀, R₅₁, R₅₂, R₆₃, R₆₄, R₆₇, R₆₉=are independently G or absent;

R₁₆=G, U or absent;

R₄, R₇, R₈, R₁₁, R₁₃, R₂₁, R₂₅, R₂₈, R₂₉, R₃₁, R₃₅, R₃₆, R₅₃, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Serine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(SER) (SEQ ID NO: 607),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ser is:

R₀=absent;

R₁₄, R₂₄, R₅₇=are independently A or absent;

R₄₁=A, C or absent;

R₂, R₃, R₄, R₅, R₆, R₇, R₉, R₁₀, R₁₁, R₁₂, R₁₃, R₁₆, R₂₁, R₂₅, R₂₆, R₂₇, R₂₈, R₃₀, R₃₁, R₃₂, R₃₃, R₃₄, R₃₇, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₆₂, R₆₃, R₆₄, R₆₅, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₁₈=A, C, U or absent;

R₁₈, R₄₀, R₅₁, R₅₆=are independently A, G or absent;

R₁, R₂₉, R₅₈, R₇₂=are independently A, G, U or absent;

R₃₉=A, U or absent;

R₆₀=C or absent;

R₃₈=C, G or absent;

R₁₇, R₂₂, R₂₃, R₇₁=are independently C, G, U or absent;

R₈, R₃₅, R₃₆, R₅₅, R₅₉, R₆₁=are independently C, U or absent;

R₁₉, R₂₀=are independently G or absent;

R₅₂=G, U or absent;

R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(SER) (SEQ ID NO: 608),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ser is:

R₀, R₂₃=absent

R₁₄, R₂₄, R₄₁, R₅₇=are independently A or absent;

R₄₄=A, C or absent;

R₂₅, R₄₅, R₄₈=are independently A, C, G or absent;

R₂, R₃, R₄, R₅, R₃₇, R₅₀, R₆₂, R₆₆, R₆₇, R₆₉, R₇₀=are independently N or absent;

R₁₂, R₂₈, R₆₅=are independently A, C, U or absent;

R₉, R₁₅, R₂₉, R₃₄, R₄₀, R₅₆, R₆₃=are independently A, G or absent;

R₇, R₂₆, R₃₀, R₃₃, R₄₆, R₅₈, R₇₂=are independently A, G, U or absent;

R₃₉=A, U or absent;

R₁₁, R₃₅, R₆₀, R₆₁=are independently C or absent;

R₁₃, R₃₈=are independently C, G or absent;

R₆, R₁₇, R₃₁, R₄₃, R₆₄, R₆₈=are independently C, G, U or absent;

R₃₆, R₄₂, R₄₉, R₅₅, R₅₉, R₇₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₂₇, R₅₁=are independently G or absent;

R₁, R₁₆, R₃₂, R₅₂=are independently G, U or absent;

R₈, R₁₈, R₂₁, R₂₂, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(SER) (SEQ ID NO: 609),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Ser is:

R₀, R₂₃=absent

R₁₄, R₂₄, R₄₁, R₅₇, R₅₈=are independently A or absent;

R₄₄=A, C or absent;

R₂₅, R₄₈=are independently A, C, G or absent;

R₂, R₃, R₅, R₃₇, R₆₆, R₆₇, R₆₉, R₇₀=are independently N or absent;

R₁₂, R₂₈, R₆₂=are independently A, C, U or absent;

R₇, R₉, R₁₅, R₂₉, R₃₃, R₃₄, R₄₀, R₄₅, R₅₆, R₆₃=are independently A, G or absent;

R₄, R₂₆, R₄₆, R₅₀=are independently A, G, U or absent;

R₃₀, R₃₉=are independently A, U or absent;

R₁₁, R₁₇, R₃₅, R₆₀, R₆₁=are independently C or absent;

R₁₃, R₃₈=are independently C, G or absent;

R₆, R₆₄=are independently C, G, U or absent;

R₃₁, R₄₂, R₄₃, R₄₉, R₅₅, R₅₉, R₆₅, R₆₈, R₇₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₂₇, R₅₁, R₅₂=are independently G or absent;

R₁, R₁₆, R₃₂, R₇₂=are independently G, U or absent;

R₈, R₁₈, R₂₁, R₂₂, R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Threonine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(THR) (SEQ ID NO: 610),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Thr is:

R₀, R₂₃=absent

R₁₄, R₄₁, R₅₇=are independently A or absent;

R₅₆, R₇₀=are independently A, C, G or absent;

R₄, R₅, R₆, R₇, R₁₂, R₁₆, R₂₆, R₃₀, R₃₁, R₃₂, R₃₄, R₃₇, R₄₂, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₄, R₆₅, R₆₆, R₆₇, R₆₈, R₇₂=are independently N or absent;

R₁₃, R₁₇, R₂₁, R₃₅, R₆₁=are independently A, C, U or absent;

R₁, R₉, R₂₄, R₂₇, R₂₉, R₆₉=are independently A, G or absent;

R₁₅, R₂₅, R₅₁=are independently A, G, U or absent;

R₄₀, R₅₃=are independently A, U or absent;

R₃₃, R₄₃=are independently C, G or absent;

R₂, R₃, R₅₉=are independently C, G, U or absent;

R₁₁, R₁₈, R₂₂, R₂₈, R₃₆, R₅₄, R₅₅, R₆₀, R₇₁=are independently C, U or absent;

R₁₀, R₂₀, R₃₈, R₅₂=are independently G or absent;

R₁₉=G, U or absent;

R₈, R₃₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(THR) (SEQ ID NO: 611),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Thr is:

R₀, R₁₈, R₂₃=absent

R₁₄, R₄₁, R₅₇=are independently A or absent;

R₉, R₄₂, R₄₄, R₄₈, R₅₆, R₇₀=are independently A, C, G or absent;

R₄, R₆, R₁₂, R₂₆, R₄₉, R₅₈, R₆₃, R₆₄, R₆₆, R₆₈=are independently N or absent;

R₁₃, R₂₁, R₃₁, R₃₇, R₆₂=are independently A, C, U or absent;

R₁, R₁₅, R₂₄, R₂₇, R₂₉, R₄₆, R₅₁, R₆₉=are independently A, G or absent;

R₇, R₂₅, R₄₅, R₅₀, R₆₇=are independently A, G, U or absent;

R₄₀, R₅₃=are independently A, U or absent;

R₃₅=C or absent;

R₃₃, R₄₃=are independently C, G or absent;

R₂, R₃, R₅, R₁₆, R₃₂, R₃₄, R₅₉, R₆₅, R₇₂=are independently C, G, U or absent;

R₁₁, R₁₇, R₂₂, R₂₈, R₃₀, R₃₆, R₅₅, R₆₀, R₆₁, R₇₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₃₈, R₅₂=are independently G or absent;

R₈, R₃₉, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(THR) (SEQ ID NO: 612),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Thr is:

R₀, R₁₈, R₂₃=absent

R₁₄, R₄₀, R₄₁, R₅₇=are independently A or absent;

R₄₄=A, C or absent;

R₉, R₄₂, R₄₈, R₅₆=are independently A, C, G or absent;

R₄, R₆, R₁₂, R₂₆, R₅₈, R₆₄, R₆₆, R₆₈=are independently N or absent;

R₁₃, R₂₁, R₃₁, R₃₇, R₄₉, R₆₂=are independently A, C, U or absent;

R₁, R₁₅, R₂₄, R₂₇, R₂₉, R₄₆, R₅₁, R₆₉=are independently A, G or absent;

R₇, R₂₅, R₄₅, R₅₀, R₆₃, R₆₇=are independently A, G, U or absent;

R₅₃=A, U or absent;

R₃₅=C or absent;

R₂, R₃₃, R₄₃, R₇₀=are independently C, G or absent;

R₅, R₁₆, R₃₄, R₅₉, R₆₅=are independently C, G, U or absent;

R₃, R₁₁, R₂₂, R₂₈, R₃₀, R₃₆, R₅₅, R₆₀, R₆₁, R₇₁=are independently C, U or absent;

R₁₀, R₁₉, R₂₀, R₃₈, R₅₂=are independently G or absent;

R₃₂=G, U or absent;

R₈, R₁₇, R₃₉, R₅₄, R₇₂=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Tryptophan TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(TRP) (SEQ ID NO: 613),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Trp is:

R₀=absent;

R₂₄, R₃₉, R₄₁, R₅₇=are independently A or absent;

R₂, R₃, R₂₆, R₂₇, R₄₀, R₄₈=are independently A, C, G or absent;

R₄, R₅, R₆, R₂₉, R₃₀, R₃₁, R₃₂, R₃₄, R₄₂, R₄₄, R₄₅, R₄₆, R₄₉, R₅₁, R₅₈, R₆₃, R₆₆, R₆₇, R₆₈=are independently N or absent;

R₁₃, R₁₄, R₁₆, R₁₈, R₂₁, R₆₁, R₆₅, R₇₁=are independently A, C, U or absent;

R₁, R₉, R₁₀, R₁₅, R₃₃, R₅₀, R₅₆=are independently A, G or absent;

R₇, R₂₅, R₇₂=are independently A, G, U or absent;

R₃₇, R₃₈, R₅₅, R₆₀=are independently C or absent;

R₁₂, R₃₅, R₄₃, R₆₄, R₆₉, R₇₀=are independently C, G, U or absent;

R₁₁, R₁₇, R₂₂, R₂₈, R₅₉, R₆₂=are independently C, U or absent;

R₁₉, R₂₀, R₅₂=are independently G or absent;

R₈, R₂₃, R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(TRP) (SEQ ID NO: 614),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Trp is:

R₀, R₁₈, R₂₂, R₂₃=absent

R₁₄, R₂₄, R₃₉, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₃, R₄, R₁₃, R₆₁, R₇₁=are independently A, C or absent;

R₆, R₄₄=are independently A, C, G or absent;

R₂₁=A, C, U or absent;

R₂, R₇, R₁₅, R₂₅, R₃₃, R₃₄, R₄₅, R₅₆, R₆₃=are independently A, G or absent;

R₅₈=A, G, U or absent;

R₄₆=A, U or absent;

R₃₇, R₃₈, R₅₅, R₆₀, R₆₂=are independently C or absent;

R₁₂, R₂₆, R₂₇, R₃₅, R₄₀, R₄₅, R₆₇=are independently C, G or absent;

R₃₂, R₄₃, R₆₈=are independently C, G, U or absent;

R₁₁, R₁₆, R₂₈, R₃₁, R₄₉, R₅₉, R₆₅, R₇₀=are independently C, U or absent;

R₁, R₉, R₁₀, R₁₉, R₂₀, R₅₀, R₅₂, R₆₉=are independently G or absent;

R₅, R₈, R₂₉, R₃₀, R₄₂, R₅₁, R₆₄, R₆₆=are independently G, U or absent;

R₁₇, R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(TRP) (SEQ ID NO: 615),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Trp is:

R₀, R₁₈, R₂₂, R₂₃=absent

R₁₄, R₂₄, R₃₉, R₄₁, R₅₇, R₇₂=are independently A or absent;

R₃, R₄, R₁₃, R₆₁, R₇₁=are independently A, C or absent;

R₆, R₄₄=are independently A, C, G or absent;

R₂₁=A, C, U or absent;

R₂, R₇, R₁₅, R₂₅, R₃₃, R₃₄, R₄₅, R₅₆, R₆₃=are independently A, G or absent;

R₅₈=A, G, U or absent;

R₄₆=A, U or absent;

R₃₇, R₃₈, R₅₅, R₆₀, R₆₂=are independently C or absent;

R₁₂, R₂₆, R₂₇, R₃₅, R₄₀, R₄₈, R₆₇=are independently C, G or absent;

R₃₂, R₄₃, R₆₈=are independently C, G, U or absent;

R₁₁, R₁₆, R₂₈, R₃₁, R₄₉, R₅₉, R₆₅, R₇₀=are independently C, U or absent;

R₁, R₉, R₁₀, R₁₉, R₂₀, R₅₀, R₅₂, R₆₉=are independently G or absent;

R₅, R₈, R₂₉, R₃₀, R₄₂, R₅₁, R₆₄, R₆₆=are independently G, U or absent;

R₁₇, R₃₆, R₅₃, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Tyrosine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(TYR) (SEQ ID NO: 616),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Tyr is:

R₀=absent

R₁₄, R₃₉, R₅₇=are independently A or absent;

R₄₁, R₄₈, R₅₁, R₇₁=are independently A, C, G or absent;

R₃, R₄, R₅, R₆, R₉, R₁₀, R₁₂, R₁₃, R₁₆, R₂₅, R₂₆, R₃₀, R₃₁, R₃₂, R₄₂, R₄₄, R₄₅, R₄₆, R₄₉, R₅₀, R₅₈, R₆₂, R₆₃, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₂₂, R₆₅=are independently A, C, U or absent;

R₁₅, R₂₄, R₂₇, R₃₃, R₃₇, R₄₀, R₅₆=are independently A, G or absent;

R₇, R₂₉, R₃₄, R₇₂=are independently A, G, U or absent;

R₂₃, R₅₃=are independently A, U or absent;

R₃₅, R₆₀=are independently C or absent;

R₂₀=C, G or absent;

R₁, R₂, R₂₈, R₆₁, R₆₄=are independently C, G, U or absent;

R₁₁, R₁₇, R₂₁, R₄₃, R₅₅=are independently C, U or absent;

R₁₉, R₅₂=are independently G or absent;

R₈, R₁₈, R₃₆, R₃₈, R₅₄, R₅₉=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(TYR) (SEQ ID NO: 617),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Tyr is:

R₀, R₁₈, R₂₃=absent

R₇, R₉, R₁₄, R₂₄, R₂₆, R₃₄, R₃₉, R₅₇=are independently A or absent;

R₄₄, R₆₉=are independently A, C or absent;

R₇₁=A, C, G or absent;

R₆₈=N or absent;

R₅₈=A, C, U or absent;

R₃₃, R₃₇, R₄₁, R₅₆, R₆₂, R₆₃=are independently A, G or absent;

R₆, R₂₉, R₇₂=are independently A, G, U or absent;

R₃₁, R₄₅, R₅₃=are independently A, U or absent;

R₁₃, R₃₅, R₄₉, R₆₀=are independently C or absent;

R₂₀, R₄₈, R₆₄, R₆₇, R₇₀=are independently C, G or absent;

R₁, R₂, R₅, R₁₆, R₆₆=are independently C, G, U or absent;

R₁₁, R₂₁, R₂₈, R₄₃, R₅₅, R₆₁=are independently C, U or absent;

R₁₀, R₁₅, R₁₉, R₂₅, R₂₇, R₄₀, R₅₁, R₅₂=are independently G or absent;

R₃, R₄, R₃₀, R₃₂, R₄₂, R₄₆=are independently G, U or absent;

R₈, R₁₂, R₁₇, R₂₂, R₃₆, R₃₈, R₅₀, R₅₄, R₅₉, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(TYR) (SEQ ID NO: 618),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Tyr is:

R₀, R₁₈, R₂₃=absent

R₇, R₉, R₁₄, R₂₄, R₂₆, R₃₄, R₃₉, R₅₇, R₇₂=are independently A or absent;

R₄₄, R₆₉=are independently A, C or absent;

R₇₁=A, C, G or absent;

R₃₇, R₄₁, R₅₆, R₆₂, R₆₃=are independently A, G or absent;

R₆, R₂₉, R₆₈=are independently A, G, U or absent;

R₃₁, R₄₅, R₅₈=are independently A, U or absent;

R₁₃, R₂₈, R₃₅, R₄₉, R₆₀, R₆₁=are independently C or absent;

R₅, R₄₈, R₆₄, R₆₇, R₇₀=are independently C, G or absent;

R₁, R₂=are independently C, G, U or absent;

R₁₁, R₁₆, R₂₁, R₄₃, R₅₅, R₆₆=are independently C, U or absent;

R₁₀, R₁₅, R₁₉, R₂₀, R₂₅, R₂₇, R₃₃, R₄₀, R₅₁, R₅₂=are independently G or absent;

R₃, R₄, R₃₀, R₃₂, R₄₂, R₄₆=are independently G, U or absent;

R₈, R₁₂, R₁₇, R₂₂, R₃₆, R₃₈, R₅₀, R₅₃, R₅₄, R₅₉, R₆₅=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Valine TREM Consensus Sequence

In an embodiment, a TREM disclosed herein comprises the sequence of Formula I_(VAL) (SEQ ID NO: 619),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Val is:

R₀, R₂₃=absent;

R₂₄, R₃₈, R₅₇=are independently A or absent;

R₉, R₇₂=are independently A, C, G or absent;

R₂, R₄, R₅, R₆, R₇, R₁₂, R₁₅, R₁₆, R₂₁, R₂₅, R₂₆, R₂₉, R₃₁, R₃₂, R₃₃, R₃₄, R₃₇, R₄₁, R₄₂, R₄₃, R₄₄, R₄₅, R₄₆, R₄₈, R₄₉, R₅₀, R₅₈, R₆₁, R₆₂, R₆₃, R₆₄, R₆₅, R₆₆, R₆₇, R₆₈, R₆₉, R₇₀=are independently N or absent;

R₁₇, R₃₅, R₅₉=are independently A, C, U or absent;

R₁₀, R₁₄, R₂₇, R₄₀, R₅₂, R₅₆=are independently A, G or absent;

R₁, R₃, R₅₁, R₅₃=are independently A, G, U or absent;

R₃₉=C or absent;

R₁₃, R₃₀, R₅₅=are independently C, G, U or absent;

R₁₁, R₂₂, R₂₈, R₆₀, R₇₁=are independently C, U or absent;

R₁₉=G or absent;

R₂₀=G, U or absent;

R₈, R₁₈, R₃₆, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula II_(VAL) (SEQ ID NO: 620),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Val is:

R₀, R₁₈, R₂₃=absent;

R₂₄, R₃₈, R₅₇=are independently A or absent;

R₆₄, R₇₀, R₇₂=are independently A, C, G or absent;

R₁₅, R₁₆, R₂₆, R₂₉, R₃₁, R₃₂, R₄₃, R₄₄, R₄₅, R₄₉, R₅₀, R₅₈, R₆₂, R₆₅=are independently N or absent;

R₆, R₁₇, R₃₄, R₃₇, R₄₁, R₅₉=are independently A, C, U or absent;

R₉, R₁₀, R₁₄, R₂₇, R₄₀, R₄₆, R₅₁, R₅₂, R₅₆=are independently A, G or absent;

R₇, R₁₂, R₂₅, R₃₃, R₅₃, R₆₃, R₆₆, R₆₈=are independently A, G, U or absent;

R₆₉=A, U or absent;

R₃₉=C or absent;

R₅, R₆₇=are independently C, G or absent;

R₂, R₄, R₁₃, R₄₈, R₅₅, R₆₁=are independently C, G, U or absent;

R₁₁, R₂₂, R₂₈, R₃₀, R₃₅, R₆₀, R₇₁=are independently C, U or absent;

R₁₉=G or absent;

R₁, R₃, R₂₀, R₄₂=are independently G, U or absent;

R₈, R₂₁, R₃₆, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

In an embodiment, a TREM disclosed herein comprises the sequence of Formula III_(VAL) (SEQ ID NO: 621),

R₀-R₁-R₂-R₃-R₄-R₅-R₆-R₇-R₈-R₉-R₁₀-R₁₁-R₁₂-R₁₃-R₁₄-R₁₅-R₁₆-R₁₇-R₁₈-R₁₉-R₂₀-R₂₁-R₂₂-R₂₃-R₂₄-R₂₅-R₂₆-R₂₇-R₂₈-R₂₉-R₃₀-R₃₁-R₃₂-R₃₃-R₃₄-R₃₅-R₃₆-R₃₇-R₃₈-R₃₉-R₄₀-R₄₁-R₄₂-R₄₃-R₄₄-R₄₅-R₄₆-[R₄₇]_(x)-R₄₈-R₄₉-R₅₀-R₅₁-R₅₂-R₅₃-R₅₄-R₅₅-R₅₆-R₅₇-R₅₈-R₅₉-R₆₀-R₆₁-R₆₂-R₆₃-R₆₄-R₆₅-R₆₆-R₆₇-R₆₈-R₆₉-R₇₀-R₇₁-R₇₂

wherein R is a ribonucleotide residue and the consensus for Val is:

R₀, R₁₈, R₂₃=absent

R₂₄, R₃₈, R₄₀, R₅₇, R₇₂=are independently A or absent;

R₂₉, R₆₄, R₇₀=are independently A, C, G or absent;

R₄₉, R₅₀, R₆₂=are independently N or absent;

R₁₆, R₂₆, R₃₁, R₃₂, R₃₇, R₄₁, R₄₃, R₅₉, R₆₅=are independently A, C, U or absent;

R₉, R₁₄, R₂₇, R₄₆, R₅₂, R₅₆, R₆₆=are independently A, G or absent;

R₇, R₁₂, R₂₅, R₃₃, R₄₄, R₄₅, R₅₃, R₅₈, R₆₃, R₆₈=are independently A, G, U or absent;

R₆₉=A, U or absent;

R₃₉=C or absent;

R₅, R₆₇=are independently C, G or absent;

R₂, R₄, R₁₃, R₁₅, R₄₈, R₅₅=are independently C, G, U or absent;

R₆, R₁₁, R₂₂, R₂₈, R₃₀, R₃₄, R₃₅, R₆₀, R₆₁, R₇₁=are independently C, U or absent;

R₁₀, R₁₉, R₅₁=are independently G or absent;

R₁, R₃, R₂₀, R₄₂=are independently G, U or absent;

R₈, R₁₇, R₂₁, R₃₆, R₅₄=are independently U or absent;

[R₄₇]_(x)=N or absent;

wherein, e.g., x=1-271 (e.g., x=1-250, x=1-225, x=1-200, x=1-175, x=1-150, x=1-125, x=1-100, x=1-75, x=1-50, x=1-40, x=1-30, x=1-29, x=1-28, x=1-27, x=1-26, x=1-25, x=1-24, x=1-23, x=1-22, x=1-21, x=1-20, x=1-19, x=1-18, x=1-17, x=1-16, x=1-15, x=1-14, x=1-13, x=1-12, x=1-11, x=1-10, x=10-271, x=20-271, x=30-271, x=40-271, x=50-271, x=60-271, x=70-271, x=80-271, x=100-271, x=125-271, x=150-271, x=175-271, x=200-271, x=225-271, x=1, x=2, x=3, x=4, x=5, x=6, x=7, x=8, x=9, x=10, x=11, x=12, x=13, x=14, x=15, x=16, x=17, x=18, x=19, x=20, x=21, x=22, x=23, x=24, x=25, x=26, x=27, x=28, x=29, x=30, x=40, x=50, x=60, x=70, x=80, x=90, x=100, x=110, x=125, x=150, x=175, x=200, x=225, x=250, or x=271), provided that the TREM has one or both of the following properties: no more than 15% of the residues are N; or no more than 20 residues are absent.

Variable Region Consensus Sequence

In an embodiment, a TREM disclosed herein comprises a variable region at position R₄₇. In an embodiment, the variable region is 1-271 ribonucleotides in length (e.g. 1-250, 1-225, 1-200, 1-175, 1-150, 1-125, 1-100, 1-75, 1-50, 1-40, 1-30, 1-29, 1-28, 1-27, 1-26, 1-25, 1-24, 1-23, 1-22, 1-21, 1-20, 1-19, 1-18, 1-17, 1-16, 1-15, 1-14, 1-13, 1-12, 1-11, 1-10, 10-271, 20-271, 30-271, 40-271, 50-271, 60-271, 70-271, 80-271, 100-271, 125-271, 150-271, 175-271, 200-271, 225-271, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 40, 50, 60, 70, 80, 90, 100, 110, 125, 150, 175, 200, 225, 250, or 271 ribonucleotides). In an embodiment, the variable region comprises any one, all or a combination of Adenine, Cytosine, Guanine or Uracil.

In an embodiment, the variable region comprises a ribonucleic acid (RNA) sequence encoded by a deoxyribonucleic acid (DNA) sequence disclosed in Table 4, e.g., any one of SEQ ID NOs: 452-561 disclosed in Table 4.

TABLE 4 Exemplary variable region sequences. SEQ ID NO SEQUENCE 1 452 AAAATATAAATATATTTC 2 453 AAGCT 3 454 AAGTT 4 455 AATTCTTCGGAATGT 5 456 AGA 6 457 AGTCC 7 458 CAACC 8 459 CAATC 9 460 CAGC 10 461 CAGGCGGGTTCTGCCCGCGC 11 462 CATACCTGCAAGGGTATC 12 463 CGACCGCAAGGTTGT 13 464 CGACCTTGCGGTCAT 14 465 CGATGCTAATCACATCGT 15 466 CGATGGTGACATCAT 16 467 CGATGGTTTACATCGT 17 468 CGCCGTAAGGTGT 18 469 CGCCTTAGGTGT 19 470 CGCCTTTCGACGCGT 20 471 CGCTTCACGGCGT 21 472 CGGCAGCAATGCTGT 22 473 CGGCTCCGCCTTC 23 474 CGGGTATCACAGGGTC 24 475 CGGTGCGCAAGCGCTGT 25 476 CGTACGGGTGACCGTACC 26 477 CGTCAAAGACTTC 27 478 CGTCGTAAGACTT 28 479 CGTTGAATAAACGT 29 480 CTGTC 30 481 GGCC 31 482 GGGGATT 32 483 GGTC 33 484 GGTTT 34 485 GTAG 35 486 TAACTAGATACTTTCAGAT 36 487 TACTCGTATGGGTGC 37 488 TACTTTGCGGTGT 38 489 TAGGCGAGTAACATCGTGC 39 490 TAGGCGTGAATAGCGCCTC 40 491 TAGGTCGCGAGAGCGGCGC 41 492 TAGGTCGCGTAAGCGGCGC 42 493 TAGGTGGTTATCCACGC 43 494 TAGTC 44 495 TAGTT 45 496 TATACGTGAAAGCGTATC 46 497 TATAGGGTCAAAAACTCTATC 47 498 TATGCAGAAATACCTGCATC 48 499 TCCCCATACGGGGGC 49 500 TCCCGAAGGGGTTC 50 501 TCTACGTATGTGGGC 51 502 TCTCATAGGAGTTC 52 503 TCTCCTCTGGAGGC 53 504 TCTTAGCAATAAGGT 54 505 TCTTGTAGGAGTTC 55 506 TGAACGTAAGTTCGC 56 507 TGAACTGCGAGGTTCC 57 508 TGAC 58 509 TGACCGAAAGGTCGT 59 510 TGACCGCAAGGTCGT 60 511 TGAGCTCTGCTCTC 61 512 TGAGGCCTCACGGCCTAC 62 513 TGAGGGCAACTTCGT 63 514 TGAGGGTCATACCTCC 64 515 TGAGGGTGCAAATCCTCC 65 516 TGCCGAAAGGCGT 66 517 TGCCGTAAGGCGT 67 518 TGCGGTCTCCGCGC 68 519 TGCTAGAGCAT 69 520 TGCTCGTATAGAGCTC 70 521 TGGACAATTGTCTGC 71 522 TGGACAGATGTCCGT 72 523 TGGACAGGTGTCCGC 73 524 TGGACGGTTGTCCGC 74 525 TGGACTTGTGGTC 75 526 TGGAGATTCTCTCCGC 76 527 TGGCATAGGCCTGC 77 528 TGGCTTATGTCTAC 78 529 TGGGAGTTAATCCCGT 79 530 TGGGATCTTCCCGC 80 531 TGGGCAGAAATGTCTC 81 532 TGGGCGTTCGCCCGC 82 533 TGGGCTTCGCCCGC 83 534 TGGGGGATAACCCCGT 84 535 TGGGGGTTTCCCCGT 85 536 TGGT 86 537 TGGTGGCAACACCGT 87 538 TGGTTTATAGCCGT 88 539 TGTACGGTAATACCGTACC 89 540 TGTCCGCAAGGACGT 90 541 TGTCCTAACGGACGT 91 542 TGTCCTATTAACGGACGT 92 543 TGTCCTTCACGGGCGT 93 544 TGTCTTAGGACGT 94 545 TGTGCGTTAACGCGTACC 95 546 TGTGTCGCAAGGCACC 96 547 TGTTCGTAAGGACTT 97 548 TTCACAGAAATGTGTC 98 549 TTCCCTCGTGGAGT 99 550 TTCCCTCTGGGAGC 100 551 TTCCCTTGTGGATC 101 552 TTCCTTCGGGAGC 102 553 TTCTAGCAATAGAGT 103 554 TTCTCCACTGGGGAGC 104 555 TTCTCGAGAGGGAGC 105 556 TTCTCGTATGAGAGC 106 557 TTTAAGGTTTTCCCTTAAC 107 558 TTTCATTGTGGAGT 108 559 TTTCGAAGGAATCC 109 560 TTTCTTCGGAAGC 110 561 TTTGGGGCAACTCAAC

Corresponding Nucleotide Positions

To determine if a selected nucleotide position in a candidate sequence corresponds to a selected position in a reference sequence (e.g., SEQ ID NO: 622, SEQ ID NO: 993, SEQ ID NO: 1079), one or more of the following Evaluations is performed.

Evaluation A:

1. The candidate sequence is aligned with each of the consensus sequences in Tables 9 and 10. The consensus sequence(s) having the most positions aligned (and which has at least 60% of the positions of the candidate sequence aligned) is selected.

The alignment is performed as is follows. The candidate sequence and an isodecoder consensus sequence from Tables 10A-10B are aligned based on a global pairwise alignment calculated with the Needleman-Wunsch algorithm when run with match scores from Table 11, a mismatch penalty of −1, a gap opening penalty of −1, and a gap extension penalty of −0.5, and no penalty for end gaps. The alignment with the highest overall alignment score is then used to determine the percent similarity between the candidate and the consensus sequence by counting the number of matched positions in the alignment, dividing it by the larger of the number of non-N bases in the candidate sequence or the consensus sequence, and multiplying the result by 100. In cases where multiple alignments (of the candidate and a single consensus sequence) tie for the same score, the percent similarity is the largest percent similarity calculated from the tied alignments. This process is repeated for the candidate sequence with each of the remaining isodecoder consensus sequences in Tables 10A-10B, and the alignment resulting in the greatest percent similarity is selected. If this alignment has a percent similarity equal to or greater than 60%, it is considered a valid alignment and used to relate positions in the candidate sequence to those in the consensus sequence, otherwise the candidate sequence is considered to have not aligned to any of the isodecoder consensus sequences. If there is a tie at this point, all tied consensus sequences are taken forward to step 2 in the analysis.

2. Using the selected consensus sequence(s) from step 1, one determines the consensus sequence position number that aligns with the selected position (e.g., a modified position) in the candidate sequence. One then assigns the position number of the aligned position in the consensus sequence to the selected position in the candidate sequence, in other words, the selected position in the candidate sequence is numbered according to the numbering of the consensus sequence. If there were tied consensus sequences from step one, and they give different position numbers in this step 2, then all such position numbers are taken forward to step 5.

3. The reference sequence is aligned with the consensus sequence chosen in step 1. The alignment is performed as described in step 1.

4. From the alignment in step 3, one determines the consensus sequence position number that aligns with the selected position (e.g., a modified position) in the reference sequence. One then assigns the position number of the aligned position in the consensus sequence to the selected position in the reference sequence, in other words, the selected position in the reference sequence is numbered according to the numbering of the consensus sequence. If there is a tie at this point, all tied consensus sequences are taken forward to step 5 in the analysis.

5. If a value for a position number determined for the reference sequence in step 2 is the same as the value for the position number determined for the candidate sequence in step 4, the positions are defined as corresponding.

Evaluation B:

The reference sequence (e.g., a TREM sequence described herein) and the candidate sequence are aligned with one another. The alignment is performed as follows.

The reference sequence and the candidate sequence are aligned based on a global pairwise alignment calculated with the Needleman-Wunsch algorithm when run with match scores from Table 11, a mismatch penalty of −1, a gap opening penalty of −1, and a gap extension penalty of −0.5, and no penalty for end gaps. The alignment with the highest overall alignment score is then used to determine the percent similarity between the candidate and reference sequence by counting the number of matched based in the alignment, dividing it by the larger of the number of non-N bases in the candidate or reference sequence, and multiplying the result by 100. In cases where multiple alignments tie for the same score, the percent similarity is the largest percent similarity calculated from the tied alignments. If this alignment has a percent similarity equal to or greater than 60%, it is considered a valid alignment and used to relate positions in the candidate sequence to those in the reference sequence, otherwise the candidate sequence is considered to have not aligned to the reference sequence.

If the selected nucleotide position in the reference sequence (e.g., a modified position) is paired with a selected nucleotide position (e.g., a modified position) in the candidate sequence, the positions are defined as corresponding.

If the selected position in the reference sequence and the candidate sequence are found to be corresponding in at least one of Evaluations A and B, the positions correspond. Thus, e.g., if two positions are found to be corresponding under Evaluation A, but do not correspond under Evaluation B, the positions are defined as corresponding.

The numbering given above is used for ease of presentation and does not imply a required sequence. If more than one Evaluation is performed, they can be performed in any order.

TABLE 10A Consensus sequence computationally generated for each isodecoder by aligning members of the isodecoder family SEQ ID Amino NO. Acid Anticodon Consensus sequence 1200 Ala AGC GGGGAATTAGCTCAAGTGGTAGAGCGCTTG CTTAGCATGCAAGAGGTAGTGGGATCGATG CCCACATTCTCCA 1201 Ala CGC GGGGATGTAGCTCAGTGGTAGAGCGCATGC TTCGCATGTATGAGGTCCCGGGTTCGATCCC CGGCATCTCCA 1202 Ala TGC GGGGGTGTAGCTCAGTGGTAGAGCGCATGC TTTGCATGTATGAGGCCCCGGGTTCGATCCC CGGCACCTCCA 1203 Arg ACG GGGCCAGTGGCGCAATGGATAACGCGTCTG ACTACGGATCAGAAGATTCCAGGTTCGACTC CTGGCTGGCTCG 1204 Arg CCG GGCCGCGTGGCCTAATGGATAAGGCGTCTG ATTCCGGATCAGAAGATTGAGGGTTCGAGTC CCTTCGTGGTCG 1205 Arg CCT GCCCCAGTGGCCTAATGGATAAGGCACTGG CCTCCTAAGCCAGGGATTGTGGGTTCGAGTC CCACCTGGGGTA 1206 Arg TCG GACCGCGTGGCCTAATGGATAAGGCGTCTG ACTTCGGATCAGAAGATTGAGGGTTCGAGTC CCTCCGTGGTCG 1207 Arg TCT GGCTCTGTGGCGCAATGGATNAGCGCATTG GACTTCTAATTCAAAGGTTGCGGGTTCGAGT CCCNCCAGAGTCG 1208 Asn GTT GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG GCTGTTAACCGNAAAGGTTGGTGGTTCGAGC CCACCCAGGGACG 1209 Asp GTC TCCTCGTTAGTATAGTGGTGAGTATCCCCGC CTGTCACGCGGGAGACCGGGGTTCGATTCCC CGACGGGGAG 1210 Cys GCA GGGGGTATAGCTCAGNGGGTAGAGCATTTG ACTGCAGATCAAGAGGTCCCCGGTTCAAATC CGGGTGCCCCCT 1211 Gln CTG GGTTCCATGGTGTAATGGTNAGCACTCTGGA CTCTGAATCCAGCGATCCGAGTTCAAGTCTC GGTGGAACCT 1212 Gln TTG GGTCCCATGGTGTAATGGTTAGCACTCTGGA CTTTGAATCCAGCGATCCGAGTTCAAATCTC GGTGGGACCT 1213 Glu CTC TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG CTCTCACCGCCGCGGCCCGGGTTCGATTCCC GGTCAGGGAA 1214 Glu TTC TCCCTGGTGGTCTAGTGGCTAGGATTCGGCG CTTTCACCGCNGCGGCCCGGGTTCGATTCCC GGTCAGGGAA 1215 Gly CCC GCATTGGTGGTTCAGTGGTAGAATTCTCGCC TCCCACGCNGGAGACCCGGGTTCGATTCCCG GCCAATGCA 1216 Gly GCC GCATTGGTGGTTCAGTGGTAGAATTCTCGCC TGCCACGCGGGAGGCCCGGGTTCGATTCCCG GCCAATGCA 1217 Gly TCC GCGTTGGTGGTATAGTGGTGAGCATAGCTGC CTTCCAAGCAGTTGACCCGGGTTCGATTCCC GGCCAACGCA 1218 Ile AAT GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT GCTAATAACGCCAAGGTCGCGGGTTCGATCC CCGTACGGGCCA 1219 Ile TAT GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT ACTTATAATGCCGAGGTTGTGAGTTCGAGCC TCACCTGGAGCA 1220 Leu AAG GGTAGCGTGGCCGAGCGGTCTAAGGCGCTG GATTAAGGCTCCAGTCTCTTCGGGGGCGTGG GTTCGAATCCCACCGCTGCCA 1221 Leu CAA GTCAGGATGGCCGAGTGGTCNTAAGGCGCC AGACTCAAGTTCTGGTCTCCGNATGGAGGCG TGGGTTCGAATCCCACTTCTGACA 1222 Leu CAG GTCAGGATGGCCGAGCGGTCTAAGGCGCTG CGTTCAGGTCGCAGTCTCCCCTGGAGGCGTG GGTTCGAATCCCACTCCTGACA 1223 Leu TAA ACCAGGATGGCCGAGTGGTTAAGGCGTTGG ACTTAAGATCCAATGGACAGATGTCCGCGTG GGTTCGAACCCCACTCCTGGTA 1224 Leu TAG GGTAGCGTGGCCGAGCGGTCTAAGGCGCTG GATTTAGGCTCCAGTCTCTTCGGNGGCGTGG GTTCGAATCCCACCGCTGCCA 1225 Lys CTT GCCCGGCTAGCTCAGTCGGTAGAGCATGAG ACTCTTAATCTCAGGGTCGTGGGTTCGAGCC CCACGTTGGGCGNNN 1226 Lys TTT GCCTGGATAGCTCAGTCGGTAGAGCATCAG ACTTTTAATCTGAGGGTCCAGGGTTCAAGTC CCTGTTCAGGCG 1227 Met CAT GCCCTCTTAGCGCAGTNGGCAGCGCGTCAGT CTCATAATCTGAAGGTCCTGAGTTCGAGCCT CAGAGAGGGCA 1228 Phe GAA GCCGAAATAGCTCAGTTGGGAGAGCGTTAG ACTGAAGATCNTAAAGGTCCCTGGTTCAATC CCGGGTTTCGGCA 1229 Pro AGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCT TAGGATGCGAGAGGTCCCGGGTTCAAATCC CGGACGAGCCC 1230 Pro CGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCT TCGGGTGCGAGAGGTCCCGGGTTCAAATCCC GGACGAGCCC 1231 Pro TGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCT TTGGGTGCGAGAGGTCCCGGGTTCAAATCCC GGACGAGCCC 1232 Ser AGA GTAGTCGTGGCCGAGTGGTTAAGGCGATGG ACTAGAAATCCATTGGGGTTTCCCCGCGCAG GTTCGAATCCTGCCGACTACG 1233 Ser CGA GCTGTGATGGCCGAGTGGTTAAGGCGTTGG ACTCGAAATCCAATGGGGTCTCCCCGCGCAG GTTCGAATCCTGCTCACAGCG 1234 Ser GCT GACGAGGNNTGGCCGAGTGGTTAAGGCGAT GGACTGCTAATCCATTGTGCTCTGCACGCGT GGGTTCGAATCCCATCCTCGTCG 1235 Ser TGA GTAGTCGTGGCCGAGTGGTTAAGGCGATGG ACTTGAAATCCATTGGGGTCTCCCCGCGCAG GTTCGAATCCTGCCGGCTACG 1236 Thr AGT GGCTCCGTGGCTTAGCTGGTTAAAGCGCCTG TCTAGTAAACAGGAGATCCTGGGTTCGAATC CCAGCGGGGCCT 1237 Thr CGT GGCNCTGTGGCTNAGTNGGNTAAAGCGCCG GTCTCGTAAACCNGGAGATCNTGGGTTCGA ATCCCANCNGGGCCT 1238 Thr TGT GGCTCCATAGCTCAGNGGGTTAGAGCACTG GTCTTGTAAACCAGGGGTCGCGAGTTCAAAT CTCGCTGGGGCCT 1239 Trp CCA GACCTCGTGGCGCAACGGTAGCGCGTCTGA CTCCAGATCAGAAGGTTGCGTGTTCAAATCA CGTCGGGGTCA 1240 Tyr GTA CCTTCGATAGCTCAGCTGGTAGAGCGGAGG ACTGTAGATCCTTAGGTCGCTGGTTCGATTC CGGCTCGAAGGA 1241 Val AAC GTTTCCGTAGTGTAGTGGTTATCACGTTCGC CTAACACGCGAAAGGTCCCCGGTTCGAAAC CGGGCGGAAACA 1242 Val CAC GTTTCCGTAGTGTAGTGGTTATCACGTTCGC CTCACACGCGAAAGGTCCCCGGTTCGAAAC CGGGCGGAAACA 1243 Val TAC GGTTCCATAGTGTAGTGGTTATCACGTCTGC TTTACACGCAGAAGGTCCTGGGTTCGAGCCC CAGTGGAACCA 1244 iMet CAT AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG CCCATAACCCAGAGGTCGATGGATCGAAAC CATCCTCTGCTA

TABLE 10B Consensus sequence computationally generated for each isodecoder by aligning members of the isodecoder family SEQ ID Amino NO Acid Anticodon Consensus sequence 1245 Ala AGC GGGGAATTAGCTCAAGTGGTAGAGCGCTTGC TTAGCATGCAAGAGGTAGTGGGATCGATGCC CACATTCTCCANNN 1246 Ala CGC GGGGATGTAGCTCAGTGGTAGAGCGCATGCT TCGCATGTATGAGGTCCCGGGTTCGATCCCC GGCATCTCCANNN 1247 Ala TGC GGGGGTGTAGCTCAGTGGTAGAGCGCATGCT TTGCATGTATGAGGCCCCGGGTTCGATCCCC GGCACCTCCANNN 1248 Arg ACG GGGCCAGTGGCGCAATGGATAACGCGTCTGA CTACGGATCAGAAGATTCCAGGTTCGACTCC TGGCTGGCTCGNNN 1249 Arg CCG GGCCGCGTGGCCTAATGGATAAGGCGTCTGA TTCCGGATCAGAAGATTGAGGGTTCGAGTCC CTTCGTGGTCGNNN 1250 Arg CCT GCCCCAGTGGCCTAATGGATAAGGCACTGGC CTCCTAAGCCAGGGATTGTGGGTTCGAGTCC CACCTGGGGTANNN 1251 Arg TCG GACCGCGTGGCCTAATGGATAAGGCGTCTGA CTTCGGATCAGAAGATTGAGGGTTCGAGTCC CTCCGTGGTCGNNN 1252 Arg TCT GGCTCTGTGGCGCAATGGATNAGCGCATTGG ACTTCTAATTCAAAGGTTGCGGGTTCGAGTC CCNCCAGAGTCGNNN 1253 Asn GTT GTCTCTGTGGCGCAATCGGTTAGCGCGTTCG GCTGTTAACCGNAAAGGTTGGTGGTTCGAGC CCACCCAGGGACGNNN 1254 Asp GTC TCCTCGTTAGTATAGTGGTGAGTATCCCCGCC TGTCACGCGGGAGACCGGGGTTCGATTCCCC GACGGGGAGNNN 1255 Cys GCA GGGGGTATAGCTCAGNGGGTAGAGCATTTGA CTGCAGATCAAGAGGTCCCCGGTTCAAATCC GGGTGCCCCCTNNN 1256 Gln CTG GGTTCCATGGTGTAATGGTNAGCACTCTGGA CTCTGAATCCAGCGATCCGAGTTCAAGTCTC GGTGGAACCTNNN 1257 Gln TTG GGTCCCATGGTGTAATGGTTAGCACTCTGGA CTTTGAATCCAGCGATCCGAGTTCAAATCTC GGTGGGACCTNNN 1258 Glu CTC TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG CTCTCACCGCCGCGGCCCGGGTTCGATTCCC GGTCAGGGAANNN 1259 Glu TTC TCCCTGGTGGTCTAGTGGCTAGGATTCGGCG CTTTCACCGCNGCGGCCCGGGTTCGATTCCC GGTCAGGGAANNN 1260 Gly CCC GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT CCCACGCNGGAGACCCGGGTTCGATTCCCGG CCAATGCANNN 1261 Gly GCC GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT GCCACGCGGGAGGCCCGGGTTCGATTCCCGG CCAATGCANNN 1262 Gly TCC GCGTTGGTGGTATAGTGGTGAGCATAGCTGC CTTCCAAGCAGTTGACCCGGGTTCGATTCCC GGCCAACGCANNN 1263 Ile AAT GGCCGGTTAGCTCAGTTGGTTAGAGCGTGGT GCTAATAACGCCAAGGTCGCGGGTTCGATCC CCGTACGGGCCANNN 1264 Ile TAT GCTCCAGTGGCGCAATCGGTTAGCGCGCGGT ACTTATAATGCCGAGGTTGTGAGTTCGAGCC TCACCTGGAGCANNN 1265 Leu AAG GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG ATTAAGGCTCCAGTCTCTTCGGGGGCGTGGG TTCGAATCCCACCGCTGCCANNN 1266 Leu CAA GTCAGGATGGCCGAGTGGTCNTAAGGCGCCA GACTCAAGTTCTGGTCTCCGNATGGAGGCGT GGGTTCGAATCCCACTTCTGACANNN 1267 Leu CAG GTCAGGATGGCCGAGCGGTCTAAGGCGCTGC GTTCAGGTCGCAGTCTCCCCTGGAGGCGTGG GTTCGAATCCCACTCCTGACANNN 1268 Leu TAA ACCAGGATGGCCGAGTGGTTAAGGCGTTGGA CTTAAGATCCAATGGACAGATGTCCGCGTGG GTTCGAACCCCACTCCTGGTANNN 1269 Leu TAG GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGG ATTTAGGCTCCAGTCTCTTCGGNGGCGTGGG TTCGAATCCCACCGCTGCCANNN 1270 Lys CTT GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA CTCTTAATCTCAGGGTCGTGGGTTCGAGCCCC ACGTTGGGCGNNNNNN 1271 Lys TTT GCCTGGATAGCTCAGTCGGTAGAGCATCAGA CTTTTAATCTGAGGGTCCAGGGTTCAAGTCCC TGTTCAGGCGNNN 1272 Met CAT GCCCTCTTAGCGCAGTNGGCAGCGCGTCAGT CTCATAATCTGAAGGTCCTGAGTTCGAGCCT CAGAGAGGGCANNN 1273 Phe GAA GCCGAAATAGCTCAGTTGGGAGAGCGTTAGA CTGAAGATCNTAAAGGTCCCTGGTTCAATCC CGGGTTTCGGCANNN 1274 Pro AGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT AGGATGCGAGAGGTCCCGGGTTCAAATCCCG GACGAGCCCNNN 1275 Pro CGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT CGGGTGCGAGAGGTCCCGGGTTCAAATCCCG GACGAGCCCNNN 1276 Pro TGG GGCTCGTTGGTCTAGGGGTATGATTCTCGCTT TGGGTGCGAGAGGTCCCGGGTTCAAATCCCG GACGAGCCCNNN 1277 Ser AGA GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA CTAGAAATCCATTGGGGTTTCCCCGCGCAGG TTCGAATCCTGCCGACTACGNNN 1278 Ser CGA GCTGTGATGGCCGAGTGGTTAAGGCGTTGGA CTCGAAATCCAATGGGGTCTCCCCGCGCAGG TTCGAATCCTGCTCACAGCGNNN 1279 Ser GCT GACGAGGNNTGGCCGAGTGGTTAAGGCGAT GGACTGCTAATCCATTGTGCTCTGCACGCGT GGGTTCGAATCCCATCCTCGTCGNNN 1280 Ser TGA GTAGTCGTGGCCGAGTGGTTAAGGCGATGGA CTTGAAATCCATTGGGGTCTCCCCGCGCAGG TTCGAATCCTGCCGGCTACGNNN 1281 Thr AGT GGCTCCGTGGCTTAGCTGGTTAAAGCGCCTG TCTAGTAAACAGGAGATCCTGGGTTCGAATC CCAGCGGGGCCTNNN 1282 Thr CGT GGCNCTGTGGCTNAGTNGGNTAAAGCGCCGG TCTCGTAAACCNGGAGATCNTGGGTTCGAAT CCCANCNGGGCCTNNN 1283 Thr TGT GGCTCCATAGCTCAGNGGGTTAGAGCACTGG TCTTGTAAACCAGGGGTCGCGAGTTCAAATC TCGCTGGGGCCTNNN 1284 Trp CCA GACCTCGTGGCGCAACGGTAGCGCGTCTGAC TCCAGATCAGAAGGTTGCGTGTTCAAATCAC GTCGGGGTCANNN 1285 Tyr GTA CCTTCGATAGCTCAGCTGGTAGAGCGGAGGA CTGTAGATCCTTAGGTCGCTGGTTCGATTCCG GCTCGAAGGANNN 1286 Val AAC GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC TAACACGCGAAAGGTCCCCGGTTCGAAACCG GGCGGAAACANNN 1287 Val CAC GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC TCACACGCGAAAGGTCCCCGGTTCGAAACCG GGCGGAAACANNN 1288 Val TAC GGTTCCATAGTGTAGTGGTTATCACGTCTGCT TTACACGCAGAAGGTCCTGGGTTCGAGCCCC AGTGGAACCANNN 1289 iMet CAT AGCAGAGTGGCGCAGCGGAAGCGTGCTGGG CCCATAACCCAGAGGTCGATGGATCGAAACC ATCCTCTGCTANNN

TABLE 11 Score values alignment Candidate Reference Match Row nucleotide nucleotide score 1 A A 1 2 T T 1 3 U T 1 4 C C 1 5 G G 1 6 A N 0 7 T N 0 8 C N 0 9 G N 0 10 N A 0 11 N T 0 12 N C 0 13 N G 0 14 N N 0

Method of Making TREMs, TREM Core Fragments, and TREM Fragments

In vitro methods for synthesizing oligonucleotides are known in the art and can be used to make a TREM, a TREM core fragment or a TREM fragment disclosed herein. For example, a TREM, TREM core fragment or TREM fragment can be synthesized using solid state synthesis or liquid phase synthesis.

In an embodiment, a TREM, a TREM core fragment or a TREM fragment made according to an in vitro synthesis method disclosed herein has a different modification profile compared to a TREM expressed and isolated from a cell, or compared to a naturally occurring tRNA.

An exemplary method for making a modified TREM is provided in Example 1. The method provided in Example 1 can also be used to make a synthetic TREM core fragment or synthetic TREM fragment. Additional exemplary methods for making a synthetic TREM via 5′-Silyl-2′-Orthoester (2′-ACE) Chemistry is provided in Example 4. The method provided in Example 4 can also be used to make a synthetic TREM core fragment or synthetic TREM fragment. Additional synthetic methods are disclosed in Hartsel S A et al., (2005) Oligonucleotide Synthesis, 033-050, the entire contents of which are hereby incorporated by reference.

TREM Composition

In an embodiment, a TREM composition, e.g., a TREM pharmaceutical composition, comprises a pharmaceutically acceptable excipient. Exemplary excipients include those provided in the FDA Inactive Ingredient Database (https://www.accessdata.fda.gov/scripts/cder/iig/index. Cfm).

In an embodiment, a TREM composition, e.g., a TREM pharmaceutical composition, comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 30, 40, 50, 60, 70, 80, 90, 100 or 150 grams of TREM, TREM core fragment or TREM fragment. In an embodiment, a TREM composition, e.g., a TREM pharmaceutical composition, comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 30, 40, 50 or 100 milligrams of TREM, TREM core fragment or TREM fragment.

In an embodiment, a TREM composition, e.g., a TREM pharmaceutical composition, is at least 10, 20, 30, 40, 50, 60, 70, 80, 90, 95 or 99% dry weight TREMs, TREM core fragments or TREM fragments.

In an embodiment, a TREM composition comprises at least 1×10⁶ TREM molecules, at least 1×10⁷ TREM molecules, at least 1×10⁸ TREM molecules or at least 1×10⁹ TREM molecules.

In an embodiment, a TREM composition comprises at least 1×10⁶ TREM core fragment molecules, at least 1×10⁷ TREM core fragment molecules, at least 1×10⁸ TREM core fragment molecules or at least 1×10⁹ TREM core fragment molecules.

In an embodiment, a TREM composition comprises at least 1×10⁶ TREM fragment molecules, at least 1×10⁷ TREM fragment molecules, at least 1×10⁸ TREM fragment molecules or at least 1×10⁹ TREM fragment molecules.

In an embodiment, a TREM composition produced by any of the methods of making disclosed herein can be charged with an amino acid using an in vitro charging reaction as known in the art.

In an embodiment, a TREM composition comprise one or more species of TREMs, TREM core fragments, or TREM fragments. In an embodiment, a TREM composition comprises a single species of TREM, TREM core fragment, or TREM fragment. In an embodiment, a TREM composition comprises a first TREM, TREM core fragment, or TREM fragment species and a second TREM, TREM core fragment, or TREM fragment species. In an embodiment, the TREM composition comprises X TREM, TREM core fragment, or TREM fragment species, wherein X=2, 3, 4, 5, 6, 7, 8, 9, or 10.

In an embodiment, the TREM, TREM core fragment, or TREM fragment has at least 70, 75, 80, 85, 90, or 95, or has 100%, identity with a sequence encoded by a nucleic acid in Table 1.

In an embodiment, the TREM comprises a consensus sequence provided herein.

A TREM composition can be formulated as a liquid composition, as a lyophilized composition or as a frozen composition.

In some embodiments, a TREM composition can be formulated to be suitable for pharmaceutical use, e.g., a pharmaceutical TREM composition. In an embodiment, a pharmaceutical TREM composition is substantially free of materials and/or reagents used to separate and/or purify a TREM, TREM core fragment, or TREM fragment.

In some embodiments, a TREM composition can be formulated with water for injection.

In some embodiments, a TREM composition formulated with water for injection is suitable for pharmaceutical use, e.g., comprises a pharmaceutical TREM composition.

TREM Characterization

A TREM, TREM core fragment, or TREM fragment, or a TREM composition, e.g., a pharmaceutical TREM composition, produced by any of the methods disclosed herein can be assessed for a characteristic associated with the TREM, TREM core fragment, or TREM fragment or the TREM composition, such as purity, sterility, concentration, structure, or functional activity of the TREM, TREM core fragment, or TREM fragment. Any of the above-mentioned characteristics can be evaluated by providing a value for the characteristic, e.g., by evaluating or testing the TREM, TREM core fragment, or TREM fragment, or the TREM composition, or an intermediate in the production of the TREM composition. The value can also be compared with a standard or a reference value. Responsive to the evaluation, the TREM composition can be classified, e.g., as ready for release, meets production standard for human trials, complies with ISO standards, complies with cGMP standards, or complies with other pharmaceutical standards. Responsive to the evaluation, the TREM composition can be subjected to further processing, e.g., it can be divided into aliquots, e.g., into single or multi-dosage amounts, disposed in a container, e.g., an end-use vial, packaged, shipped, or put into commerce. In embodiments, in response to the evaluation, one or more of the characteristics can be modulated, processed or re-processed to optimize the TREM composition. For example, the TREM composition can be modulated, processed or re-processed to (i) increase the purity of the TREM composition; (ii) decrease the amount of fragments in the composition; (iii) decrease the amount of endotoxins in the composition; (iv) increase the in vitro translation activity of the composition; (v) increase the TREM concentration of the composition; or (vi) inactivate or remove any viral contaminants present in the composition, e.g., by reducing the pH of the composition or by filtration.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) has a purity of at least 30%, 40%, 50%, 60%, 70%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%, i.e., by mass.

In an embodiment, the TREM (e.g., TREM composition or an intermediate in the production of the TREM composition) has less than 0.1%, 0,5%, 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 15%, 20%, 25% TREM fragments relative to full length TREMs.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) has low levels or absence of endotoxins, e.g., a negative result as measured by the Limulus amebocyte lysate (LAL) test.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) has in-vitro translation activity, e.g., as measured by an assay described in Examples 12-13.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) has a TREM concentration of at least 0.1 ng/mL, 0.5 ng/mL, 1 ng/mL, 5 ng/mL, 10 ng/mL, 50 ng/mL, 0.1 ug/mL, 0.5 ug/mL, 1 ug/mL, 2 ug/mL, 5 ug/mL, 10 ug/mL, 20 ug/mL, 30 ug/mL, 40 ug/mL, 50 ug/mL, 60 ug/mL, 70 ug/mL, 80 ug/mL, 100 ug/mL, 200 ug/mL, 300 ug/mL, 500 ug/mL, 1000 ug/mL, 5000 ug/mL, 10,000 ug/mL, or 100,000 ug/mL.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) is sterile, e.g., the composition or preparation supports the growth of fewer than 100 viable microorganisms as tested under aseptic conditions, the composition or preparation meets the standard of USP <71>, and/or the composition or preparation meets the standard of USP <85>.

In an embodiment, the TREM, TREM core fragment, or TREM fragment (e.g., TREM composition or an intermediate in the production of the TREM composition) has an undetectable level of viral contaminants, e.g., no viral contaminants. In an embodiment, any viral contaminant, e.g., residual virus, present in the composition is inactivated or removed. In an embodiment, any viral contaminant, e.g., residual virus, is inactivated, e.g., by reducing the pH of the composition. In an embodiment, any viral contaminant, e.g., residual virus, is removed, e.g., by filtration or other methods known in the field.

TREM Administration

Any TREM composition or pharmaceutical composition described herein can be administered to a cell, tissue or subject, e.g., by direct administration to a cell, tissue and/or an organ in vitro, ex-vivo or in vivo. In-vivo administration may be via, e.g., by local, systemic and/or parenteral routes, for example intravenous, subcutaneous, intraperitoneal, intrathecal, intramuscular, ocular, nasal, urogenital, intradermal, dermal, enteral, intravitreal, intracerebral, intrathecal, or epidural.

Vectors and Carriers

In some embodiments the TREM, TREM core fragment, or TREM fragment or TREM composition described herein, is delivered to cells, e.g. mammalian cells or human cells, using a vector. The vector may be, e.g., a plasmid or a virus. In some embodiments, delivery is in vivo, in vitro, ex vivo, or in situ. In some embodiments, the virus is an adeno associated virus (AAV), a lentivirus, or an adenovirus. In some embodiments, the system or components of the system are delivered to cells with a viral-like particle or a virosome. In some embodiments, the delivery uses more than one virus, viral-like particle or virosome.

Carriers

A TREM, a TREM composition or a pharmaceutical TREM composition described herein may comprise, may be formulated with, or may be delivered in, a carrier.

Viral Vectors

The carrier may be a viral vector (e.g., a viral vector comprising a sequence encoding a TREM, a TREM core fragment or a TREM fragment). The viral vector may be administered to a cell or to a subject (e.g., a human subject or animal model) to deliver a TREM, a TREM core fragment or a TREM fragment, a TREM composition or a pharmaceutical TREM composition.

A viral vector may be systemically or locally administered (e.g., injected). Viral genomes provide a rich source of vectors that can be used for the efficient delivery of exogenous genes into a mammalian cell. Viral genomes are known in the art as useful vectors for delivery because the polynucleotides contained within such genomes are typically incorporated into the nuclear genome of a mammalian cell by generalized or specialized transduction. These processes occur as part of the natural viral replication cycle, and do not require added proteins or reagents in order to induce gene integration. Examples of viral vectors include a retrovirus (e.g., Retroviridae family viral vector), adenovirus (e.g., Ad5, Ad26, Ad34, Ad35, and Ad48), parvovirus (e.g., adeno-associated viruses), coronavirus, negative strand RNA viruses such as orthomyxovirus (e.g., influenza virus), rhabdovirus (e.g., rabies and vesicular stomatitis virus), paramyxovirus (e.g., measles and Sendai), positive strand RNA viruses, such as picornavirus and alphavirus, and double stranded DNA viruses including adenovirus, herpesvirus (e.g., Herpes Simplex virus types 1 and 2, Epstein-Barr virus, cytomegalovirus, replication deficient herpes virus), and poxvirus (e.g., vaccinia, modified vaccinia Ankara (MVA), fowlpox and canarypox). Other viruses include Norwalk virus, togavirus, flavivirus, reoviruses, papovavirus, hepadnavirus, human papilloma virus, human foamy virus, and hepatitis virus, for example. Examples of retroviruses include: avian leukosis-sarcoma, avian C-type viruses, mammalian C-type, B-type viruses, D-type viruses, oncoretroviruses, HTLV-BLV group, lentivirus, alpharetrovirus, gammaretrovirus, spumavirus (Coffin, J. M., Retroviridae: The viruses and their replication, Virology (Third Edition) Lippincott-Raven, Philadelphia, 1996). Other examples include murine leukemia viruses, murine sarcoma viruses, mouse mammary tumor virus, bovine leukemia virus, feline leukemia virus, feline sarcoma virus, avian leukemia virus, human T-cell leukemia virus, baboon endogenous virus, Gibbon ape leukemia virus, Mason Pfizer monkey virus, simian immunodeficiency virus, simian sarcoma virus, Rous sarcoma virus and lentiviruses. Other examples of vectors are described, for example, in U.S. Pat. No. 5,801,030, the teachings of which are incorporated herein by reference. In some embodiments the system or components of the system are delivered to cells with a viral-like particle or a virosome.

Cell and Vesicle-Based Carriers

A TREM, a TREM core fragment or a TREM fragment, a TREM composition or a pharmaceutical TREM composition described herein can be administered to a cell in a vesicle or other membrane-based carrier.

In embodiments, a TREM, a TREM core fragment or a TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein is administered in or via a cell, vesicle or other membrane-based carrier. In one embodiment, the TREM, TREM core fragment, TREM fragment, or TREM composition or pharmaceutical TREM composition can be formulated in liposomes or other similar vesicles. Liposomes are spherical vesicle structures composed of a uni- or multilamellar lipid bilayer surrounding internal aqueous compartments and a relatively impermeable outer lipophilic phospholipid bilayer. Liposomes may be anionic, neutral or cationic. Liposomes are biocompatible, nontoxic, can deliver both hydrophilic and lipophilic drug molecules, protect their cargo from degradation by plasma enzymes, and transport their load across biological membranes and the blood brain barrier (BBB) (see, e.g., Spuch and Navarro, Journal of Drug Delivery, vol. 2011, Article ID 469679, 12 pages, 2011. doi:10.1155/2011/469679 for review).

Vesicles can be made from several different types of lipids; however, phospholipids are most commonly used to generate liposomes as drug carriers. Methods for preparation of multilamellar vesicle lipids are known in the art (see for example U.S. Pat. No. 6,693,086, the teachings of which relating to multilamellar vesicle lipid preparation are incorporated herein by reference). Although vesicle formation can be spontaneous when a lipid film is mixed with an aqueous solution, it can also be expedited by applying force in the form of shaking by using a homogenizer, sonicator, or an extrusion apparatus (see, e.g., Spuch and Navarro, Journal of Drug Delivery, vol. 2011, Article ID 469679, 12 pages, 2011. doi:10.1155/2011/469679 for review). Extruded lipids can be prepared by extruding through filters of decreasing size, as described in Templeton et al., Nature Biotech, 15:647-652, 1997, the teachings of which relating to extruded lipid preparation are incorporated herein by reference.

Lipid nanoparticles are another example of a carrier that provides a biocompatible and biodegradable delivery system for the TREM, TREM core fragment, TREM fragment, or TREM composition or pharmaceutical TREM composition described herein. Nanostructured lipid carriers (NLCs) are modified solid lipid nanoparticles (SLNs) that retain the characteristics of the SLN, improve drug stability and loading capacity, and prevent drug leakage. Polymer nanoparticles (PNPs) are an important component of drug delivery. These nanoparticles can effectively direct drug delivery to specific targets and improve drug stability and controlled drug release. Lipid-polymer nanoparticles (PLNs), a new type of carrier that combines liposomes and polymers, may also be employed. These nanoparticles possess the complementary advantages of PNPs and liposomes. A PLN is composed of a core-shell structure; the polymer core provides a stable structure, and the phospholipid shell offers good biocompatibility. As such, the two components increase the drug encapsulation efficiency rate, facilitate surface modification, and prevent leakage of water-soluble drugs. For a review, see, e.g., Li et al. 2017, Nanomaterials 7, 122; doi:10.3390/nano7060122.

Exemplary lipid nanoparticles are disclosed in International Application PCT/US2014/053907, the entire contents of which are hereby incorporated by reference. For example, an LNP described in paragraphs [403-406] or [410-413] of PCT/US2014/053907 can be used as a carrier for the TREM, TREM core fragment, TREM fragment, or TREM composition or pharmaceutical TREM composition described herein.

Additional exemplary lipid nanoparticles are disclosed in U.S. Pat. No. 10,562,849 the entire contents of which are hereby incorporated by reference. For example, an LNP of formula (I) as described in columns 1-3 of U.S. Pat. No. 10,562,849 can be used as a carrier for the TREM, TREM core fragment, TREM fragment, or TREM composition or pharmaceutical TREM composition described herein.

Lipids that can be used in nanoparticle formations (e.g., lipid nanoparticles) include, for example those described in Table 4 of WO2019217941, which is incorporated by reference, e.g., a lipid-containing nanoparticle can comprise one or more of the lipids in Table 4 of WO2019217941. Lipid nanoparticles can include additional elements, such as polymers, such as the polymers described in Table 5 of WO2019217941, incorporated by reference.

In some embodiments, conjugated lipids, when present, can include one or more of PEG-diacylglycerol (DAG) (such as 1-(monomethoxy-polyethyleneglycol)-2,3-dimyristoylglycerol (PEG-DMG)), PEG-dialkyloxypropyl (DAA), PEG-phospholipid, PEG-ceramide (Cer), a pegylated phosphatidylethanoloamine (PEG-PE), PEG succinate diacylglycerol (PEGS-DAG) (such as 4-0-(2′,3′-di(tetradecanoyloxy)propyl-1-0-(w-methoxy(polyethoxy)ethyl) butanedioate (PEG-S-DMG)), PEG dialkoxypropylcarbam, N-(carbonyl-methoxypoly ethylene glycol 2000)-1,2-distearoyl-sn-glycero-3-phosphoethanolamine sodium salt, and those described in Table 2 of WO2019051289 (incorporated by reference), and combinations of the foregoing.

In some embodiments, sterols that can be incorporated into lipid nanoparticles include one or more of cholesterol or cholesterol derivatives, such as those in WO2009/127060 or US2010/0130588, which are incorporated by reference. Additional exemplary sterols include phytosterols, including those described in Eygeris et al (2020), incorporated herein by reference.

In some embodiments, the lipid particle comprises an ionizable lipid, a non-cationic lipid, a conjugated lipid that inhibits aggregation of particles, and a sterol. The amounts of these components can be varied independently and to achieve desired properties. For example, in some embodiments, the lipid nanoparticle comprises an ionizable lipid is in an amount from about 20 mol % to about 90 mol % of the total lipids (in other embodiments it may be 20-70% (mol), 30-60% (mol) or 40-50% (mol); about 50 mol % to about 90 mol % of the total lipid present in the lipid nanoparticle), a non-cationic lipid in an amount from about 5 mol % to about 30 mol % of the total lipids, a conjugated lipid in an amount from about 0.5 mol % to about 20 mol % of the total lipids, and a sterol in an amount from about 20 mol % to about 50 mol % of the total lipids. The ratio of total lipid to nucleic acid can be varied as desired. For example, the total lipid to nucleic acid (mass or weight) ratio can be from about 10:1 to about 30:1.

In some embodiments, the lipid to nucleic acid ratio (mass/mass ratio; w/w ratio) can be in the range of from about 1:1 to about 25:1, from about 10:1 to about 14:1, from about 3:1 to about 15:1, from about 4:1 to about 10:1, from about 5:1 to about 9:1, or about 6:1 to about 9:1. The amounts of lipids and nucleic acid can be adjusted to provide a desired N/P ratio, for example, N/P ratio of 3, 4, 5, 6, 7, 8, 9, 10 or higher. Generally, the lipid nanoparticle formulation's overall lipid content can range from about 5 mg/ml to about 30 mg/mL.

Some non-limiting example of lipid compounds that may be used (e.g., in combination with other lipid components) to form lipid nanoparticles for the delivery of compositions described herein, e.g., nucleic acid (e.g., RNA) described herein includes,

In some embodiments an LNP comprising Formula (i) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (ii) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (iii) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (v) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (vi) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (viii) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (ix) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

wherein X¹ is O, NR or a direct bond, X² is C2-5 alkylene, X³ is C(═O) or a direct bond, R¹ is H or Me, R³ is Ci-3 alkyl, R² is Ci-3 alkyl, or R² taken together with the nitrogen atom to which it is attached and 1-3 carbon atoms of X² form a 4-, 5-, or 6-membered ring, or X¹ is NR¹, R¹ and R² taken together with the nitrogen atoms to which they are attached from a 5- or 6-membered ring, or R² taken together with R³ and the nitrogen atom to which they are attached form a 5-, 6-, or 7-membered ring, Y¹ is C2-12 alkylene. Y² is selected from

n is 0 to 3, R₄ is Ci-15 alkyl, Z is Ci-6 alkylene or a direct bond, Z² is

(in either orientation) or absent, provided that if Z¹ is a direct bond, Z² is absent R⁵ is C5-9 alkyl or C6-10 alkoxy, R⁶ is C5-9 alkyl or C6-10 alkoxy, W is methylene or a direct bond, and R⁷ is 1-1 or Me, or a salt thereof, provided that if R³ and R² are C2 alkyls, X¹ is O, X² is linear C3 alkylene, X is C(═O), Y¹ is linear Ce alkylene, (Y²)n-R⁴ is

R⁴ is linear C5 alkyl, Z¹ is C2 alkylene, Z² is absent, W is methylene, and R⁷ is H, R⁵ and R⁶ are not Cx alkoxy.

In some embodiments an LNP comprising Formula (xii) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising Formula (xi) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprises a compound of Formula (xiii) and a compound of Formula (xiv).

In some embodiments, an LNP comprising Formula (xv) is used to deliver a TREM composition described herein to the liver and/or hepatocyte cells.

In some embodiments an LNP comprising a formulation of Formula (xvi) is used to deliver a TREM composition described herein to the lung endothelial cells.

In some embodiments, a lipid compound used to form lipid nanoparticles for the delivery of compositions described herein, e.g., a TREM described herein is made by one of the following reactions:

In some embodiments, a composition described herein (e.g., TREM composition) is provided in an LNP that comprises an ionizable lipid. In some embodiments, the ionizable lipid is heptadecan-9-yl 8-((2-hydroxyethyl)(6-oxo-6-(undecyloxy)hexyl)amino)octanoate (SM-102); e.g., as described in Example 1 of U.S. Pat. No. 9,867,888 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is 9Z,12Z)-3-((4,4-bis(octyloxy)butanoyl)oxy)-2-((((3-(diethylamino)propoxy)carbonyl)oxy)methyl)propyl octadeca-9,12-dienoate (LP01), e.g., as synthesized in Example 13 of WO2015/095340 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is Di((Z)-non-2-en-1-yl) 9-((4-dimethylamino)-butanoyl)oxy)heptadecanedioate (L319), e.g. as synthesized in Example 7, 8, or 9 of US2012/0027803 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is 1,1′-((2-(4-(2-((2-(Bis(2-hydroxydodecyl)amino)ethyl)(2-hydroxydodecyl) amino)ethyl)piperazin-1-yl)ethyl)azanediyl)bis(dodecan-2-ol) (C12-200), e.g., as synthesized in Examples 14 and 16 of WO2010/053572 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is Imidazole cholesterol ester (ICE) lipid (3S,10R,13R,17R)-10,13-dimethyl-17-((R)-6-methylheptan-2-yl)-2, 3, 4, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17-tetradecahydro-1H-cyclopenta[a]phenanthren-3-yl 3-(1H-imidazol-4-yl)propanoate, e.g., Structure (I) from WO2020/106946 (incorporated by reference herein in its entirety).

In some embodiments, an ionizable lipid may be a cationic lipid, an ionizable cationic lipid, e.g., a cationic lipid that can exist in a positively charged or neutral form depending on pH, or an amine-containing lipid that can be readily protonated. In some embodiments, the cationic lipid is a lipid capable of being positively charged, e.g., under physiological conditions. Exemplary cationic lipids include one or more amine group(s) which bear the positive charge. In some embodiments, the lipid particle comprises a cationic lipid in formulation with one or more of neutral lipids, ionizable amine-containing lipids, biodegradable alkyne lipids, steroids, phospholipids including polyunsaturated lipids, structural lipids (e.g., sterols), PEG, cholesterol and polymer conjugated lipids. In some embodiments, the cationic lipid may be an ionizable cationic lipid. An exemplary cationic lipid as disclosed herein may have an effective pKa over 6.0. In embodiments, a lipid nanoparticle may comprise a second cationic lipid having a different effective pKa (e.g., greater than the first effective pKa), than the first cationic lipid. A lipid nanoparticle may comprise between 40 and 60 mol percent of a cationic lipid, a neutral lipid, a steroid, a polymer conjugated lipid, and a therapeutic agent, e.g., a TREM described herein, encapsulated within or associated with the lipid nanoparticle. In some embodiments, the TREM is co-formulated with the cationic lipid. The TREM may be adsorbed to the surface of an LNP, e.g., an LNP comprising a cationic lipid. In some embodiments, the TREM may be encapsulated in an LNP, e.g., an LNP comprising a cationic lipid. In some embodiments, the lipid nanoparticle may comprise a targeting moiety, e.g., coated with a targeting agent. In embodiments, the LNP formulation is biodegradable. In some embodiments, a lipid nanoparticle comprising one or more lipid described herein, e.g., Formula (i), (ii), (ii), (vii) and/or (ix) encapsulates at least 1%, at least 5%, at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 92%, at least 95%, at least 97%, at least 98% or 100% of a TREM.

Exemplary ionizable lipids that can be used in lipid nanoparticle formulations include, without limitation, those listed in Table 1 of WO2019051289, incorporated herein by reference. Additional exemplary lipids include, without limitation, one or more of the following formulae: X of US2016/0311759; I of US20150376115 or in US2016/0376224; I, II or III of US20160151284; I, IA, II, or IIA of US20170210967; I-c of US20150140070; A of US2013/0178541; I of US2013/0303587 or US2013/0123338; I of US2015/0141678; II, III, IV, or V of US2015/0239926; I of US2017/0119904; I or II of WO2017/117528; A of US2012/0149894; A of US2015/0057373; A of WO2013/116126; A of US2013/0090372; A of US2013/0274523; A of US2013/0274504; A of US2013/0053572; A of WO2013/016058; A of WO2012/162210; I of US2008/042973; I, II, III, or IV of US2012/01287670; I or II of US2014/0200257; I, II, or III of US2015/0203446; I or III of US2015/0005363; I, IA, IB, IC, ID, II, IIA, IIB, IIC, IID, or III-XXIV of US2014/0308304; of US2013/0338210; I, II, III, or IV of WO2009/132131; A of US2012/01011478; I or XXXV of US2012/0027796; XIV or XVII of US2012/0058144; of US2013/0323269; I of US2011/0117125; I, II, or III of US2011/0256175; I, II, III, IV, V, VI, VII, VIII, IX, X, XI, XII of US2012/0202871; I, II, III, IV, V, VI, VII, VIII, X, XII, XIII, XIV, XV, or XVI of US2011/0076335; I or II of US2006/008378; I of US2013/0123338; I or X-A-Y-Z of US2015/0064242; XVI, XVII, or XVIII of US2013/0022649; I, II, or III of US2013/0116307; I, II, or III of US2013/0116307; I or II of US2010/0062967; I-X of US2013/0189351; I of US2014/0039032; V of US2018/0028664; I of US2016/0317458; I of US2013/0195920; 5, 6, or 10 of U.S. Pat. No. 10,221,127; III-3 of WO2018/081480; I-5 or I-8 of WO2020/081938; 18 or 25 of U.S. Pat. No. 9,867,888; A of US2019/0136231; II of WO2020/219876; 1 of US2012/0027803; OF-02 of US2019/0240349; 23 of U.S. Pat. No. 10,086,013; cKK-E12/A6 of Miao et al (2020); C12-200 of WO2010/053572; 7C1 of Dahlman et al (2017); 304-013 or 503-013 of Whitehead et al; TS-P4C2 of U.S. Pat. No. 9,708,628; I of WO2020/106946; I of WO2020/106946.

In some embodiments, the ionizable lipid is MC3 (6Z,9Z,28Z,31Z)-heptatriaconta-6,9,28,31-tetraen-19-yl-4-(dimethylamino) butanoate (DLin-MC3-DMA or MC3), e.g., as described in Example 9 of WO2019051289A9 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is the lipid ATX-002, e.g., as described in Example 10 of WO2019051289A9 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is (13Z,16Z)-A,A-dimethyl-3-nonyldocosa-13,16-dien-1-amine (Compound 32), e.g., as described in Example 11 of WO2019051289A9 (incorporated by reference herein in its entirety). In some embodiments, the ionizable lipid is Compound 6 or Compound 22, e.g., as described in Example 12 of WO2019051289A9 (incorporated by reference herein in its entirety).

Exemplary non-cationic lipids include, but are not limited to, distearoyl-sn-glycero-phosphoethanolamine, distearoylphosphatidylcholine (DSPC), dioleoylphosphatidylcholine (DOPC), dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylglycerol (DOPG), dipalmitoylphosphatidylglycerol (DPPG), dioleoyl-phosphatidylethanolamine (DOPE), palmitoyloleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), dioleoyl-phosphatidylethanolamine 4-(N-maleimidomethyl)-cyclohexane-1-carboxylate (DOPE-mal), dipalmitoyl phosphatidyl ethanolamine (DPPE), dimyristoylphosphoethanolamine (DMPE), distearoyl-phosphatidyl-ethanolamine (DSPE), monomethyl-phosphatidylethanolamine (such as 16-O-monomethyl PE), dimethyl-phosphatidylethanolamine (such as 16-O-dimethyl PE), 18-1-trans PE, 1-stearoyl-2-oleoyl-phosphatidyethanolamine (SOPE), hydrogenated soy phosphatidylcholine (HSPC), egg phosphatidylcholine (EPC), dioleoylphosphatidylserine (DOPS), sphingomyelin (SM), dimyristoyl phosphatidylcholine (DMPC), dimyristoyl phosphatidylglycerol (DMPG), distearoylphosphatidylglycerol (DSPG), dierucoylphosphatidylcholine (DEPC), palmitoyloleyolphosphatidylglycerol (POPG), dielaidoyl-phosphatidylethanolamine (DEPE), lecithin, phosphatidylethanolamine, lysolecithin, lysophosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, sphingomyelin, egg sphingomyelin (ESM), cephalin, cardiolipin, phosphatidicacid, cerebrosides, dicetylphosphate, lysophosphatidylcholine, dilinoleoylphosphatidylcholine, or mixtures thereof. It is understood that other diacylphosphatidylcholine and diacylphosphatidylethanolamine phospholipids can also be used. The acyl groups in these lipids are preferably acyl groups derived from fatty acids having C10-C24 carbon chains, e.g., lauroyl, myristoyl, paimitoyl, stearoyl, or oleoyl. Additional exemplary lipids, in certain embodiments, include, without limitation, those described in Kim et al. (2020) dx.doi.org/10.1021/acs.nanolett.0c01386, incorporated herein by reference. Such lipids include, in some embodiments, plant lipids found to improve liver transfection with mRNA (e.g., DGTS).

Other examples of non-cationic lipids suitable for use in the lipid nanoparticles include, without limitation, nonphosphorous lipids such as, e.g., stearylamine, dodeeylamine, hexadecylamine, acetyl palmitate, glycerol ricinoleate, hexadecyl stereate, isopropyl myristate, amphoteric acrylic polymers, triethanolamine-lauryl sulfate, alkyl-aryl sulfate polyethyloxylated fatty acid amides, dioctadecyl dimethyl ammonium bromide, ceramide, sphingomyelin, and the like. Other non-cationic lipids are described in WO2017/099823 or US patent publication US2018/0028664, the contents of which is incorporated herein by reference in their entirety.

In some embodiments, the non-cationic lipid is oleic acid or a compound of Formula I, II, or IV of US2018/0028664, incorporated herein by reference in its entirety. The non-cationic lipid can comprise, for example, 0-30% (mol) of the total lipid present in the lipid nanoparticle. In some embodiments, the non-cationic lipid content is 5-20% (mol) or 10-15% (mol) of the total lipid present in the lipid nanoparticle. In embodiments, the molar ratio of ionizable lipid to the neutral lipid ranges from about 2:1 to about 8:1 (e.g., about 2:1, 3:1, 4:1, 5:1, 6:1, 7:1, or 8:1).

In some embodiments, the lipid nanoparticles do not comprise any phospholipids.

In some aspects, the lipid nanoparticle can further comprise a component, such as a sterol, to provide membrane integrity. One exemplary sterol that can be used in the lipid nanoparticle is cholesterol and derivatives thereof. Non-limiting examples of cholesterol derivatives include polar analogues such as 5a-choiestanol, 53-coprostanol, choiesteryl-(2′-hydroxy)-ethyl ether, choiesteryl-(4′-hydroxy)-butyl ether, and 6-ketocholestanol; non-polar analogues such as 5a-cholestane, cholestenone, 5a-cholestanone, 5p-cholestanone, and cholesteryl decanoate; and mixtures thereof. In some embodiments, the cholesterol derivative is a polar analogue, e.g., choiesteryl-(4′-hydroxy)-butyl ether. Exemplary cholesterol derivatives are described in PCT publication WO2009/127060 and US patent publication US2010/0130588, each of which is incorporated herein by reference in its entirety.

In some embodiments, the component providing membrane integrity, such as a sterol, can comprise 0-50% (mol) (e.g., 0-10%, 10-20%, 20-30%, 30-40%, or 40-50%) of the total lipid present in the lipid nanoparticle. In some embodiments, such a component is 20-50% (mol) 30-40% (mol) of the total lipid content of the lipid nanoparticle.

In some embodiments, the lipid nanoparticle can comprise a polyethylene glycol (PEG) or a conjugated lipid molecule. Generally, these are used to inhibit aggregation of lipid nanoparticles and/or provide steric stabilization. Exemplary conjugated lipids include, but are not limited to, PEG-lipid conjugates, polyoxazoline (POZ)-lipid conjugates, polyamide-lipid conjugates (such as ATTA-lipid conjugates), cationic-polymer lipid (CPL) conjugates, and mixtures thereof. In some embodiments, the conjugated lipid molecule is a PEG-lipid conjugate, for example, a (methoxy polyethylene glycol)-conjugated lipid.

Exemplary PEG-lipid conjugates include, but are not limited to, PEG-diacylglycerol (DAG) (such as 1-(monomethoxy-polyethyleneglycol)-2,3-dimyristoylglycerol (PEG-DMG)), PEG-dialkyloxypropyl (DAA), PEG-phospholipid, PEG-ceramide (Cer), a pegylated phosphatidylethanoloamine (PEG-PE), PEG succinate diacylglycerol (PEGS-DAG) (such as 4-O-(2′,3′-di(tetradecanoyloxy)propyl-1-0-(w-methoxy(polyethoxy)ethyl) butanedioate (PEG-S-DMG)), PEG dialkoxypropylcarbam, N-(carbonyl-methoxypolyethylene glycol 2000)-1,2-distearoyl-sn-glycero-3-phosphoethanolamine sodium salt, or a mixture thereof. Additional exemplary PEG-lipid conjugates are described, for example, in U.S. Pat. Nos. 5,885,613, 6,287,591, US2003/0077829, US2003/0077829, US2005/0175682, US2008/0020058, US2011/0117125, US2010/0130588, US2016/0376224, US2017/0119904, and US/099823, the contents of all of which are incorporated herein by reference in their entirety. In some embodiments, a PEG-lipid is a compound of Formula III, III-a-I, III-a-2, III-b-1, III-b-2, or V of US2018/0028664, the content of which is incorporated herein by reference in its entirety. In some embodiments, a PEG-lipid is of Formula II of US20150376115 or US2016/0376224, the content of both of which is incorporated herein by reference in its entirety. In some embodiments, the PEG-DAA conjugate can be, for example, PEG-dilauryloxypropyl, PEG-dimyristyloxypropyl, PEG-dipalmityloxypropyl, or PEG-distearyloxypropyl. The PEG-lipid can be one or more of PEG-DMG, PEG-dilaurylglycerol, PEG-dipalmitoylglycerol, PEG-disterylglycerol, PEG-dilaurylglycamide, PEG-dimyristylglycamide, PEG-dipalmitoylglycamide, PEG-disterylglycamide, PEG-cholesterol (1-[8′-(Cholest-5-en-3[beta]-oxy)carboxamido-3′,6′-dioxaoctanyl] carbamoyl-[omega]-methyl-poly(ethylene glycol), PEG-DMB (3,4-Ditetradecoxylbenzyl-[omega]-methyl-poly(ethylene glycol) ether), and 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000]. In some embodiments, the PEG-lipid comprises PEG-DMG, 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000]. In some embodiments, the PEG-lipid comprises a structure selected from:

In some embodiments, lipids conjugated with a molecule other than a PEG can also be used in place of PEG-lipid. For example, polyoxazoline (POZ)-lipid conjugates, polyamide-lipid conjugates (such as ATTA-lipid conjugates), and cationic-polymer lipid (GPL) conjugates can be used in place of or in addition to the PEG-lipid.

Exemplary conjugated lipids, i.e., PEG-lipids, (POZ)-lipid conjugates, ATTA-lipid conjugates and cationic polymer-lipids are described in the PCT and LIS patent applications listed in Table 2 of WO2019051289A9, the contents of all of which are incorporated herein by reference in their entirety.

In some embodiments, the PEG or the conjugated lipid can comprise 0-20% (mol) of the total lipid present in the lipid nanoparticle. In some embodiments, PEG or the conjugated lipid content is 0.5-10% or 2-5% (mol) of the total lipid present in the lipid nanoparticle. Molar ratios of the ionizable lipid, non-cationic-lipid, sterol, and PEG/conjugated lipid can be varied as needed. For example, the lipid particle can comprise 30-70% ionizable lipid by mole or by total weight of the composition, 0-60% cholesterol by mole or by total weight of the composition, 0-30% non-cationic-lipid by mole or by total weight of the composition and 1-10% conjugated lipid by mole or by total weight of the composition. Preferably, the composition comprises 30-40% ionizable lipid by mole or by total weight of the composition, 40-50% cholesterol by mole or by total weight of the composition, and 10-20% non-cationic-lipid by mole or by total weight of the composition. In some other embodiments, the composition is 50-75% ionizable lipid by mole or by total weight of the composition, 20-40% cholesterol by mole or by total weight of the composition, and 5 to 10% non-cationic-lipid, by mole or by total weight of the composition and 1-10% conjugated lipid by mole or by total weight of the composition. The composition may contain 60-70% ionizable lipid by mole or by total weight of the composition, 25-35% cholesterol by mole or by total weight of the composition, and 5-10% non-cationic-lipid by mole or by total weight of the composition. The composition may also contain up to 90% ionizable lipid by mole or by total weight of the composition and 2 to 15% non-cationic lipid by mole or by total weight of the composition. The formulation may also be a lipid nanoparticle formulation, for example comprising 8-30% ionizable lipid by mole or by total weight of the composition, 5-30% non-cationic lipid by mole or by total weight of the composition, and 0-20% cholesterol by mole or by total weight of the composition; 4-25% ionizable lipid by mole or by total weight of the composition, 4-25% non-cationic lipid by mole or by total weight of the composition, 2 to 25% cholesterol by mole or by total weight of the composition, 10 to 35% conjugate lipid by mole or by total weight of the composition, and 5% cholesterol by mole or by total weight of the composition; or 2-30% ionizable lipid by mole or by total weight of the composition, 2-30% non-cationic lipid by mole or by total weight of the composition, 1 to 15% cholesterol by mole or by total weight of the composition, 2 to 35% conjugate lipid by mole or by total weight of the composition, and 1-20% cholesterol by mole or by total weight of the composition; or even up to 90% ionizable lipid by mole or by total weight of the composition and 2-10% non-cationic lipids by mole or by total weight of the composition, or even 100% cationic lipid by mole or by total weight of the composition. In some embodiments, the lipid particle formulation comprises ionizable lipid, phospholipid, cholesterol and a PEG-ylated lipid in a molar ratio of 50:10:38.5:1.5. In some other embodiments, the lipid particle formulation comprises ionizable lipid, cholesterol and a PEG-ylated lipid in a molar ratio of 60:38.5:1.5.

In some embodiments, the lipid particle comprises ionizable lipid, non-cationic lipid (e.g. phospholipid), a sterol (e.g., cholesterol) and a PEG-ylated lipid, where the molar ratio of lipids ranges from 20 to 70 mole percent for the ionizable lipid, with a target of 40-60, the mole percent of non-cationic lipid ranges from 0 to 30, with a target of 0 to 15, the mole percent of sterol ranges from 20 to 70, with a target of 30 to 50, and the mole percent of PEG-ylated lipid ranges from 1 to 6, with a target of 2 to 5.

In some embodiments, the lipid particle comprises ionizable lipid/non-cationic-lipid/sterol/conjugated lipid at a molar ratio of 50:10:38.5:1.5.

In an aspect, the disclosure provides a lipid nanoparticle formulation comprising phospholipids, lecithin, phosphatidylcholine and phosphatidylethanolamine.

In some embodiments, one or more additional compounds can also be included. Those compounds can be administered separately, or the additional compounds can be included in the lipid nanoparticles of the invention. In other words, the lipid nanoparticles can contain other compounds in addition to the nucleic acid or at least a second nucleic acid, different than the first. Without limitations, other additional compounds can be selected from the group consisting of small or large organic or inorganic molecules, monosaccharides, disaccharides, trisaccharides, oligosaccharides, polysaccharides, peptides, proteins, peptide analogs and derivatives thereof, peptidomimetics, nucleic acids, nucleic acid analogs and derivatives, an extract made from biological materials, or any combinations thereof.

In some embodiments, LNPs are directed to specific tissues by the addition of targeting domains. For example, biological ligands may be displayed on the surface of LNPs to enhance interaction with cells displaying cognate receptors, thus driving association with and cargo delivery to tissues wherein cells express the receptor. In some embodiments, the biological ligand may be a ligand that drives delivery to the liver, e.g., LNPs that display GalNAc result in delivery of nucleic acid cargo to hepatocytes that display asialoglycoprotein receptor (ASGPR). The work of Akinc et al. Mol Ther 18(7):1357-1364 (2010) teaches the conjugation of a trivalent GalNAc ligand to a PEG-lipid (GalNAc-PEG-DSG) to yield LNPs dependent on ASGPR for observable LNP cargo effect (see, e.g., FIG. 6 of Akinc et al. 2010, supra). Other ligand-displaying LNP formulations, e.g., incorporating folate, transferrin, or antibodies, are discussed in WO2017223135, which is incorporated herein by reference in its entirety, in addition to the references used therein, namely Kolhatkar et al., Curr Drug Discov Technol. 2011 8:197-206; Musacchio and Torchilin, Front Biosci. 2011 16:1388-1412; Yu et al., Mol Membr Biol. 2010 27:286-298; Patil et al., Crit Rev Ther Drug Carrier Syst. 2008 25:1-61; Benoit et al., Biomacromolecules. 2011 12:2708-2714; Zhao et al., Expert Opin Drug Deliv. 2008 5:309-319; Akinc et al., Mol Ther. 2010 18:1357-1364; Srinivasan et al., Methods Mol Biol. 2012 820:105-116; Ben-Arie et al., Methods Mol Biol. 2012 757:497-507; Peer 2010 J Control Release. 20:63-68; Peer et al., Proc Natl Acad Sci USA. 2007 104:4095-4100; Kim et al., Methods Mol Biol. 2011 721:339-353; Subramanya et al., Mol Ther. 2010 18:2028-2037; Song et al., Nat Biotechnol. 2005 23:709-717; Peer et al., Science. 2008 319:627-630; and Peer and Lieberman, Gene Ther. 2011 18:1127-1133.

In some embodiments, LNPs are selected for tissue-specific activity by the addition of a Selective ORgan Targeting (SORT) molecule to a formulation comprising traditional components, such as ionizable cationic lipids, amphipathic phospholipids, cholesterol and poly(ethylene glycol) (PEG) lipids. The teachings of Cheng et al. Nat Nanotechnol 15(4):313-320 (2020) demonstrate that the addition of a supplemental “SORT” component precisely alters the in vivo RNA delivery profile and mediates tissue-specific (e.g., lungs, liver, spleen) gene delivery and editing as a function of the percentage and biophysical property of the SORT molecule.

In some embodiments, the LNPs comprise biodegradable, ionizable lipids. In some embodiments, the LNPs comprise (9Z,12Z)-3-((4,4-bis(octyloxy)butanoyl)oxy)-2-((((3-(diethylamino)propoxy)carbonyl)oxy)methyl)propyl octadeca-9,12-dienoate, also called 3-((4,4-bis(octyloxy)butanoyl)oxy)-2-((((3-(diethylamino)propoxy)carbonyl)oxy)methyl)propyl (9Z,12Z)-octadeca-9,12-dienoate) or another ionizable lipid. See, e.g, lipids of WO2019/067992, WO/2017/173054, WO2015/095340, and WO2014/136086, as well as references provided therein. In some embodiments, the term cationic and ionizable in the context of LNP lipids is interchangeable, e.g., wherein ionizable lipids are cationic depending on the pH.

In some embodiments, the average LNP diameter of the LNP formulation may be between 10s of nm and 100s of nm, e.g., measured by dynamic light scattering (DLS). In some embodiments, the average LNP diameter of the LNP formulation may be from about 40 nm to about 150 nm, such as about 40 nm, 45 nm, 50 nm, 55 nm, 60 nm, 65 nm, 70 nm, 75 nm, 80 nm, 85 nm, 90 nm, 95 nm, 100 nm, 105 nm, 110 nm, 115 nm, 120 nm, 125 nm, 130 nm, 135 nm, 140 nm, 145 nm, or 150 nm. In some embodiments, the average LNP diameter of the LNP formulation may be from about 50 nm to about 100 nm, from about 50 nm to about 90 nm, from about 50 nm to about 80 nm, from about 50 nm to about 70 nm, from about 50 nm to about 60 nm, from about 60 nm to about 100 nm, from about 60 nm to about 90 nm, from about 60 nm to about 80 nm, from about 60 nm to about 70 nm, from about 70 nm to about 100 nm, from about 70 nm to about 90 nm, from about 70 nm to about 80 nm, from about 80 nm to about 100 nm, from about 80 nm to about 90 nm, or from about 90 nm to about 100 nm. In some embodiments, the average LNP diameter of the LNP formulation may be from about 70 nm to about 100 nm. In a particular embodiment, the average LNP diameter of the LNP formulation may be about 80 nm. In some embodiments, the average LNP diameter of the LNP formulation may be about 100 nm. In some embodiments, the average LNP diameter of the LNP formulation ranges from about 1 mm to about 500 mm, from about 5 mm to about 200 mm, from about 10 mm to about 100 mm, from about 20 mm to about 80 mm, from about 25 mm to about 60 mm, from about 30 mm to about 55 mm, from about 35 mm to about 50 mm, or from about 38 mm to about 42 mm.

A LNP may, in some instances, be relatively homogenous. A polydispersity index may be used to indicate the homogeneity of a LNP, e.g., the particle size distribution of the lipid nanoparticles. A small (e.g., less than 0.3) polydispersity index generally indicates a narrow particle size distribution. A LNP may have a polydispersity index from about 0 to about 0.25, such as 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24, or 0.25. In some embodiments, the polydispersity index of a LNP may be from about 0.10 to about 0.20.

The zeta potential of a LNP may be used to indicate the electrokinetic potential of the composition. In some embodiments, the zeta potential may describe the surface charge of an LNP. Lipid nanoparticles with relatively low charges, positive or negative, are generally desirable, as more highly charged species may interact undesirably with cells, tissues, and other elements in the body. In some embodiments, the zeta potential of a LNP may be from about −10 mV to about +20 mV, from about −10 mV to about +15 mV, from about −10 mV to about +10 mV, from about −10 mV to about +5 mV, from about −10 mV to about 0 mV, from about −10 mV to about −5 mV, from about −5 mV to about +20 mV, from about −5 mV to about +15 mV, from about −5 mV to about +10 mV, from about −5 mV to about +5 mV, from about −5 mV to about 0 mV, from about 0 mV to about +20 mV, from about 0 mV to about +15 mV, from about 0 mV to about +10 mV, from about 0 mV to about +5 mV, from about +5 mV to about +20 mV, from about +5 mV to about +15 mV, or from about +5 mV to about +10 mV.

The efficiency of encapsulation of a TREM describes the amount of TREM that is encapsulated or otherwise associated with a LNP after preparation, relative to the initial amount provided. The encapsulation efficiency is desirably high (e.g., close to 100%). The encapsulation efficiency may be measured, for example, by comparing the amount of TREM in a solution containing the lipid nanoparticle before and after breaking up the lipid nanoparticle with one or more organic solvents or detergents. An anion exchange resin may be used to measure the amount of free protein or nucleic acid (e.g., RNA) in a solution. Fluorescence may be used to measure the amount of free TREM in a solution. For the lipid nanoparticles described herein, the encapsulation efficiency of a TREM may be at least 50%, for example 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%. In some embodiments, the encapsulation efficiency may be at least 80%. In some embodiments, the encapsulation efficiency may be at least 90%. In some embodiments, the encapsulation efficiency may be at least 95%.

A LNP may optionally comprise one or more coatings. In some embodiments, a LNP may be formulated in a capsule, film, or table having a coating. A capsule, film, or tablet including a composition described herein may have any useful size, tensile strength, hardness or density.

Additional exemplary lipids, formulations, methods, and characterization of LNPs are taught by WO2020061457, which is incorporated herein by reference in its entirety.

In some embodiments, in vitro or ex vivo cell lipofections are performed using Lipofectamine MessengerMax (Thermo Fisher) or TransIT-mRNA Transfection Reagent (Mirus Bio). In certain embodiments, LNPs are formulated using the GenVoy_ILM ionizable lipid mix (Precision NanoSystems). In certain embodiments, LNPs are formulated using 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane (DLin-KC2-DMA) or dilinoleylmethyl-4-dimethylaminobutyrate (DLin-MC3-DMA or MC3), the formulation and in vivo use of which are taught in Jayaraman et al. Angew Chem Int Ed Engl 51(34):8529-8533 (2012), incorporated herein by reference in its entirety.

LNP formulations optimized for the delivery of CRISPR-Cas systems, e.g., Cas9-gRNA RNP, gRNA, Cas9 mRNA, are described in WO2019067992 and WO2019067910, both incorporated by reference.

Additional specific LNP formulations useful for delivery of nucleic acids are described in U.S. Pat. Nos. 8,158,601 and 8,168,775, both incorporated by reference, which include formulations used in patisiran, sold under the name ONPATTRO.

Exosomes can also be used as drug delivery vehicles for the TREM, TREM core fragment, TREM fragment, or TREM compositions or pharmaceutical TREM composition described herein. For a review, see Ha et al. July 2016. Acta Pharmaceutica Sinica B. Volume 6, Issue 4, Pages 287-296; https://doi.org/10.1016/j.apsb.2016.02.001.

Ex vivo differentiated red blood cells can also be used as a carrier for a TREM, TREM core fragment, TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein. See, e.g., WO2015073587; WO2017123646; WO2017123644; WO2018102740; wO2016183482; WO2015153102; WO2018151829; WO2018009838; Shi et al. 2014. Proc Natl Acad Sci USA. 111(28): 10131-10136; U.S. Pat. No. 9,644,180; Huang et al. 2017. Nature Communications 8: 423; Shi et al. 2014. Proc Natl Acad Sci USA. 111(28): 10131-10136.

Fusosome compositions, e.g., as described in WO2018208728, can also be used as carriers to deliver the TREM, TREM core fragment, TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein.

Virosomes and virus-like particles (VLPs) can also be used as carriers to deliver a TREM, TREM core fragment, TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein to targeted cells.

Plant nanovesicles, e.g., as described in WO2011097480A1, WO2013070324A1, or WO2017004526A1 can also be used as carriers to deliver the TREM, TREM core fragment, TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein.

Delivery without a Carrier

A TREM, a TREM core fragment or a TREM fragment, a TREM composition or a pharmaceutical TREM composition described herein can be administered to a cell without a carrier, e.g., via naked delivery of the TREM, a TREM core fragment or a TREM fragment, a TREM composition or a pharmaceutical TREM composition.

In some embodiments, naked delivery as used herein refers to delivery without a carrier. In some embodiments, delivery without a carrier, e.g., naked delivery, comprises delivery with a moiety, e.g., a targeting peptide.

In some embodiments, a TREM, a TREM core fragment or a TREM fragment, or TREM composition, or pharmaceutical TREM composition described herein is delivered to a cell without a carrier, e.g., via naked delivery. In some embodiments, the delivery without a carrier, e.g., naked delivery, comprises delivery with a moiety, e.g., a targeting peptide.

Use of TREMs

A TREM composition (e.g., a pharmaceutical TREM composition described herein) can modulate a function in a cell, tissue or subject. In embodiments, a TREM composition (e.g., a pharmaceutical TREM composition) described herein is contacted with a cell or tissue, or administered to a subject in need thereof, in an amount and for a time sufficient to modulate (increase or decrease) one or more of the following parameters: adaptor function (e.g., cognate or non-cognate adaptor function), e.g., the rate, efficiency, robustness, and/or specificity of initiation or elongation of a polypeptide chain; ribosome binding and/or occupancy; regulatory function (e.g., gene silencing or signaling); cell fate; mRNA stability; protein stability; protein transduction; protein compartmentalization. A parameter may be modulated, e.g., by at least 5% (e.g., at least 10%, 15%, 20%, 25%, 30%, 40%. 50%. 60%. 70%, 80%, 90%, 100%, 150%, 200% or more) compared to a reference tissue, cell or subject (e.g., a healthy, wild-type or control cell, tissue or subject).

All references and publications cited herein are hereby incorporated by reference.

The following examples are provided to further illustrate some embodiments of the present invention, but are not intended to limit the scope of the invention; it will be understood by their exemplary nature that other procedures, methodologies, or techniques known to those skilled in the art may alternatively be used.

EXAMPLES

Table of Contents for Examples Example 1 Synthesis of modified TREMs Example 2 Synthesis of guanosine 2′-O-MOE phosphoramidite Example 3 Synthesis of 5,6 dihydrouridine Example 4 Synthesis of a TREM via 5′-Silyl-2′-Orthoester (2′-ACE) Chemistry Example 5 Synthesis of an arginine TREM having a 2′-O-MOE modification Example 6 Method of synthesizing a glutamine TREM having a pseudouridine modification Example 7 HPLC and MS analysis of modified TREMs Example 8 Analysis of modified TREMs via anion-exchange HPLC Example 9 Analysis of TREMs via PAGE Purification and Analysis Example 10 Deprotection of synthesized TREM Example 11 Characterization of chemically modified TREMs for readthrough of a premature termination codon (PTC) in a reporter protein Example 12 Correction of a mis sense mutation in an ORF with administration of a TREM Example 13 Evaluation of protein expression levels of SMC-containing ORF with administration of a TREM Example 14 Modulation of translation rate of SMC-containing ORF with TREM administration

Example 1: Synthesis of a Modified TREM

Generally, TREM molecules (e.g., modified TREMs) may be chemically synthesized and purified by HPLC according to standard solid phase synthesis methods using phosphoramidite chemistry. (see, e.g., Scaringe S. et al. (2004) Curr Protoc Nucleic Acid Chem, 2.10.1-2.10.16; Usman N. et al. (1987) J. Am. Chem. Soc, 109, 7845-7854). Individually modified TREM molecules containing one or more 2′-methoxy (2′OMe), 2′ fluoro (2′F), 2′-methoxyethyl (2′-MOE), or phosphorothioate (PS) modifications were prepared using either TREM-Arg-TGA, TREM-Ser-TAG, or TREM-Gln-TAA sequences as a framework according to phosphoramidite technology on solid phase used in oligonucleotide synthesis. For clarity, the arginine non-cognate TREM molecule named TREM-Arg-TGA contains the sequence of ARG-UCU-TREM body but with the anticodon sequence corresponding to UCA instead of UCU (i.e., SEQ ID NO: 622). Simlarly, a serine non-cognate TREM molecule named TREM-Ser-TAG contains the sequence of SER-GCU-TREM body but with the anticodon sequence corresponding to CUA instead of GCU (i.e., SEQ ID NO: 993). A glutamine non-cognate TREM molecule named TREM-Gln-TAA contains the sequence of GLN-CUG-TREM body but with the anticodon sequence corresponding to UUA instead of CUG (i.e., SEQ ID NO: 1079).

To make the 2′OMe modified TREMs, the following 2′-O-methyl phosphoramidites were used: (5′-O-dimethoxytrityl-N6-(benzoyl)-2′-O-methyl-adenosine-3′-O-(2-cyanoethyl-N,N-diisopropy-lamino) phosphoramidite, 5′-O-dimethoxy-trityl-N4-(acetyl)-2′-O-methyl-cytidine-3′-O-(2-cyanoethyl-N,N-diisopropyl-amino) phosphoramidite, (5′-O -dimethoxytrityl-N2-(isobutyryl)-2′-O-methyl-guanosine-3′-O-(2-cyano-ethyl-N,N-diisopropylamino)-phosphoramidite, and 5′-O-dimethoxy-trityl-2′-O-methyluridine-3′-O -(2-cyanoethyl-N,N-diisopropylamino)phosphoramidite. To make the 2′-deoxy and 2′-F modified TREMs, analogous 2′-deoxy and 2′-fluoro-phosphoramidites with the same protecting groups as the 2′-O-methyl RNA amidites were used. To make the 2′-MOE modified TREMs, the following 2′-MOE-phosphoramidites were used: 5′-O-(4,4′-Dimethoxytrityl)-2′-O-methoxyethyl-N6-benzoyl-adenosine-3′-O-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite, 5′-O-(4,4′-Dimethoxytrityl)-2′-O-methoxyethyl-5-methyl-N4-benzoyl-cytidine-3′-O-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite, 5′-O-(4,4′-Dimethoxytrityl)-2′-O-methoxyethyl-N2-isobutyryl-guanosine-3′-O-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite, 5′-O-(4,4′-Dimethoxytrityl)-2′-O-methoxyethyl-5-methyl-uridine-3′-O-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite.

During the oligonucleotide synthesis via this phosphoramidites approach, the phosphorothioate was introduced by oxidizing the phosphite triester using a sulfur transfer reagent, such as tetraethylthiuram disulfide (TETD), bis(O,O-diisopropoxy phosphinothioyl) disulfide (Stec's reagent), 3H-1,2-benzodithiol-3-one-1,1,-dioxide (Beaucage reagent), phenylacetyl disulfide (PADS), 3-ethoxy-1,2,4-dithiazoline-5-one (EDITH), 1,2-dithiazole-5-thione (xanthane hydride or ADTT), 3-((dimethylamino-methylidene)amino)-3H-1,2,4-dithiazole-3-thione (DDTT), dimethylthiuram disulfide (DTD), 3-phenyl-1,2,4-dithiazoline-5-one (PolyOrg Sulfa or POS).

Tables 15-22 below describe a series of singly and multiply modified TREMs synthesized according to this procedure. The sequences of each of these TREMs are provided in the table, wherein r: ribonucleotide; m: 2′-OMe; *: PS linkage; f: 2′-fluoro; moe: 2′-moe; d: deoxyribonucleotide; 5MeC: 5-methylcytosine. Thus, for example, mA represents 2′-O-methyl adenosine, moe5MeC represents 2′-MOE nucleotide with 5-methylcytosine nucleobase, and dA represents an adenosine deoxyribonucleotide.

Example 2: Synthesis of Guanosine 2′-O-MOE Phosphoramidite

This example describes the synthesis of guanosine 2′-O-MOE phosphoramidite. Guanosine 2′-O-MOE phosphoramidite is prepared and purified according to previously published procedures (Wen K. et al. (2002) The Journal of Organic Chemistry, 67(22), 7887-7889).

Briefly, guanosine and imidazole are dried by co-evaporation with pyridine, dissolved in dry DMF, and treated with bis(diisopropylchlorosilyl) methane added dropwise at 0° C. The temperature is gradually increased to 25° C. and then held for 5 h. The reaction mixture is poured into ice water, and the precipitated white solid filtered to afford compound 1. To a solution of compound 1, BrCH2CH2OCH3, and TBAI in DMF at −20° C. is added with sodium bis (trimethylsilyl)amide, and the mixture is stirred for 4 hours under argon. After the reaction is quenched with methanol, the THF is evaporated and the residue is precipitated in ice to furnish compound 2. TBAF is added to a solution of compound 2 at 25° C. and then the mixture is stirred at 35° C. for 5 hours. The solvent is then evaporated under reduced pressure, and the residue is filtered in a short pad of silica gel using 10% methanol in dichloromethane to afford guanosine 2′-O-MOE phosphoramidite.

Example 3: Synthesis of 5,6 Dihydrouridine

This example describes the synthesis of 5,6 dihydrouridine. 5,6 dihydrouridine phosphoramidite is prepared and purified according to previously published procedures (Hanze A R et al., (1967) Journal of the American Chemical Society, 89(25), 6720-6725). Briefly, oxygen is bubbled through a solution uridine in the presence of platinum black. The reaction is followed by spotting the reaction mixture on silica gel thin layer chromatographic plates and developing in methanol-chloroform (1:1). After 1 hour, the mixture is cooled and centrifuged and the clear liquid lyophilized to yield the 5,6 dihydrouridine product.

Example 4: Synthesis of a TREM Via 5′-Silyl-2′-Orthoester (2′-ACE) Chemistry

This example describes the synthesis of a TREM via 5′-Silyl-2′-Orthoester (2′-ACE) Chemistry summarized from (Hartsel S A et al., (2005) Oligonucleotide Synthesis, 033-050).

Protected Ribonucleoside Monomers

5′-O-silyl-2′-O-ACE protected phosphoramidites are prepared and purified according to previously published procedures (Hartsel S A et al., (2005) Oligonucleotide Synthesis, 033-050). Briefly, monomer synthesis begins from standard base-protected ribonucleosides [rA(ibu), rC(acetyl), rG(ibu) and U]. Orthogonal, 5′-silyl-2′-ACE protection and amidite preparation is then accomplished in five general steps:

-   -   1. Simultaneous transient protection of the 5′- and 3′-hydroxyl         groups with 1,1,3,3tetraispropyldisiloxane (TIPS).     -   2. Regiospecific conversion of the 2′-hydroxyl to the         2′-O-orthoester using tris(acetoxyethyl)orthoformate (ACE         orthoformate).     -   3. Removal of the 5′,3′-TIPS protection.     -   4. Introduction of the 5′-O-silyl ether protecting group using         benzhydryloxybis-(trimethylsilyloxy)-chlorosilane (BzH-Cl).     -   5. Phosphitylation of the 3′-OH with         bis(N,N′-diisopropylamino)methoxyphosphine.

The fully protected, phosphitylated monomer is an oil. For ease of handling and dissolution, the phosphoramidite solution is evaporated to dryness in a tared flask to enable quantitation of yields. The phosphoramidite oil is then dissolved in anhydrous acetonitrile, distributed into synthesis vials in 1.0-mmol aliquots, and evaporated to dryness under vacuum in the presence of potassium hydroxide (KOH) and P2O5.

Synthesis of Oligoribonucleosides

TABLE 12 Synthesis Delivery Reaction Step Reagent Time Time Deblock 3% DCA in DCM 35 Activator 0.5M S-ethyl-tetrazole 6 Coupling 0.1M amidite8.0 30 0.5M S-ethyl-tetrazole 8 30 Repeat Coupling Oxidation t-Butyl hydroperoxide 20 10 Repeat Oxidation Delivery Capping 1-methylimidazole and 12 10 acetic anhydride Desilylation TEAHF 35

5′-silyl-2′-ACE oligoribonucleotide synthesis begins with the appropriately modified 3′-terminal nucleoside attached through the 3′-hydroxyl to a polystyrene support. The solid support contained in an appropriate reaction cartridge is then placed on the appropriate column position on the instrument. A synthesis cycle is created using the delivery times and wait steps outlined in Table 12.

-   -   1. Initial detritylation: The first step in the synthesis cycle         is the removal of the 5′ O-DMT from the nucleoside-bound         polystyrene support using 3% DCA in DCM.     -   2. Coupling: The 5-ethylthio-1H-tetrazole solution is delivered         to the solid support, followed by simultaneous delivery of an         equal quantity of activator and phosphoramidite solution.         Depending on the desired sequence and synthesis scale, excess         activator and activator plus amidite are alternately delivered         repeatedly to increase coupling efficiency, which is typically         in excess of 99% per coupling reaction. The         5-ethylthio-1H-tetrazole activates coupling by protonating the         diisopropyl amine attached to the trivalent phosphorous.         Nucleophilic attack of the 5-ethylthio-1H-tetrazole leads to the         formation of the tetrazolide intermediate that reacts with the         free 5′-OH of the support-bound nucleoside forming the         internucleotide phosphite linkage.     -   3. Oxidation: In the next step of chain elongation, the         phosphorous(III) linkage is oxidized for 10-20 s to the more         stable and ultimately desired P(V) linkage using         t-butylhydroperoxide.     -   4. Capping: Although delivery of excess activator and         phosphoramidite increases coupling efficiency, a small         percentage of unreacted nucleoside may remain support-bound. To         prevent the introduction of mixed sequences, the unreacted 5′-OH         are “capped” or blocked by acetylating the primary hydroxyl.         This acetylation is achieved through simultaneous delivery of         1-methylimidazole and acetic anhydride.     -   5. 5′-Desilylation: Before the next nucleoside in the sequence         can be added to the growing oligonucleotide chain, the 5′-silyl         group is removed with fluoride ion. This requires the delivery         of triethylamine trihydrogenfluoride for 45 s. The desilylation         is rapid and quantitative and no wait step is required.         Steps 2-5 are repeated for each subsequent nucleotide until the         desired sequence is constructed.

Oligonucleotide Deprotection

A two-stage rapid deprotection strategy is employed to remove phosphate backbone protection, release the oligonucleotide from the solid support, and remove the exocyclic amine protecting groups on A, G, and C. The treatment also removes the acetyl moiety from the acetoxyethyl orthoester, resulting in the 2′-bis-hydroxyethyl protected intermediate that is now 10 times more labile to final acid deprotection. In the first deprotection step, S2Na2 is used to selectively remove the methyl protection from the internucleotide phosphate, leaving the oligoribonucleotide attached to the polystyrene support. This configuration allows any residual reagent to be thoroughly washed away before proceeding. Alternatively, a multicolumn, manifold approach can also be used.

-   -   1. A syringe barrel is attached to one of the two luer fittings         on the synthesis column. 2 mL of the S2Na2 reagent is drawn into         a second syringe and attached to the opposite side of the         synthesis column. The S2Na2 reagent is gently pushed through the         column and into the empty syringe barrel continuing back and         forth several times. The column, filled with reagent is allowed         to sit at room temperature for 10 min.     -   2. S2Na2 reagent is removed from the column. Using a clean         syringe, the column is washed thoroughly with water. In the         second deprotection step, 40% 1-methylamine in water is used to         free the oligoribonucleotide from the solid support, deprotect         the exocyclic base amines, and deacylate the 2′-orthoester         leaving the deprotected species.

N-Methylamine Deprotection

-   -   1. The solid support resin is transferred from the column into a         4-mL vial     -   2. 2 mL 40% methylamine is added and heated for 12 min at 60° C.     -   3. The methylamine is removed and is transferred into a fresh         vial.     -   4. The oligonucleotide solution is evaporated to dryness in a         SpeedVac or similar device. Oligonucleotide yields are measured         using an ultraviolet (UV) spectrophotometer (absorbance at 260         nm).

Example 5: Synthesis of an Arginine TREM Having a 2′-O-MOE Modification

This example describes the synthesis of an Arg TREM having one 2′-O-MOE modification. The 2′-O-MOE modification can be placed on a nucleotide on any domain or linker of the Arg TREM, or at any position in said domain or linker.

A 2′-ACE RNA oligoribonucleotide synthesis is performed on a modified Applied Biosystems 394 DNA/RNA synthesizer or similar instrument. 2′-O-MOE amidites are synthesized as in Example 2. An oligonucleotide sequence: GGCUCCGUGGCGCAAUGGAUAGCGCAUUGGACUUCUAAUUCAAAGGUUCCGGGUU CG(A-MOE)GUCCCGGCGGAGUCG (SEQ ID NO: 1290) is synthesized following the protocol described in example 4. A similar method can be used to add a 2′-O-MOE modification on a TREM specifying any one of the other 19 amino acids.

Example 6: Synthesis of a Glutamine TREM Having a Pseudouridine Modification

This example describes the synthesis of a Gln TREM having a pseudouridine modification. The modification can be placed on a nucleotide on any domain or linker of the Gln TREM, or at any position in said domain or linker.

A 2′-ACE RNA oligoribonucleotide synthesis is performed on a modified Applied Biosystems 394 DNA/RNA synthesizer or similar instrument. Pseudouridine (P) amidites are obtained from Glen Research or similar provider. An oligonucleotide sequence: GGUUCCAUGGUGPAAUGGUAAGCACUCUGGACUCTGAAUCCAGCGAUCCGAGUUC GAGUCUCGGUGGAACCUCCA (SEQ ID NO: 1291) is synthesized following the protocol described in example 4.

A similar method can be used to add a pseudouridine modification on a TREM specifying any one of the other 19 amino acids.

Example 7: HPLC and MS Analysis of Modified TREMs

Chemically modified TREM molecules may be analyzed by HPLC, for example, to evaluate the purity and homogeneity of the compositions. A Waters Aquity UPLC system using a Waters BEH C18 column (2.1 mm×50 mm×1.7 m) may be used for this analysis. Samples may be prepared by dissolving 0.5 nmol of the TREM in 75 μL of water and injecting 2 μL of the solution. The buffers used may be 50 mM dimethylhexylammonium acetate with 10% CH₃CN (acetonitrile) as buffer A and 50 mM dimethylhexylammonium acetate with 75% CH₃CN as buffer B (gradient 25-75% buffer B over 5 mins), with a flow rate of 0.5 mL/min at 60° C. ESI-LCMS data for the chemically modified TREMs may be acquired on a Thermo Ultimate 3000-LTQ-XL mass spectrometer.

Tables 15-22 below describe a series of singly and multiply modified TREMs synthesized according to the protocol outlined in Example 1. The calculated and detected molecular weights for each sequence were determined as outlined herein.

Example 8: Analysis of Modified TREMs Via Anion-Exchange HPLC

This example describes the quality control of a synthesized TREM via anion-exchange HPLC. Using the Dionex DNA-Pac-PA-100 column, a gradient is employed using HPLC buffer A and HPLC buffer B. 0.5 ODUs of a sample that has been dissolved in H2O or Tris buffer, pH 7.5 is injected onto the gradient. The gradient employed is based on oligonucleotide length and can be applied according to Table 13. The parameters provided in Table 14 can be used to program a linear gradient on the HPLC analyzer.

TABLE 13 Oligonucleotide length and gradient percentages Length Gradient (bases) (% B) 0-5  0-30  6-10 10-40 11-16 20-50 17-32 30-60 33-50 40-70 >50 50-80

TABLE 14 Parameters for a linear gradient on HPLC analyzer Time Flow % % (min) (mL/min) Buffer A Buffer B 0 1.5 100 0 1 1.5 100 0 3 1.5 70a 30a 15 1.5 40a 60a 15.5 2.5 0 100 17 2.5 0 100 17.25 2.5 100 0 23 2.5 100 0 s23.1 1.5 100 0 24 1.5 100 0 25 0.1 100 0

Example 9: Analysis of TREMs Via PAGE Purification and Analysis

This example describes the quality control of a synthesized TREM via PAGE Purification and Analysis. Gel purification and analysis of 2′-ACE protected RNA follows standard protocols for denaturing PAGE (Ellington and Pollard (1998) In Current Protocols in Molecular Biology, Chanda, V). Briefly, the 2′-ACE protected oligo is resuspended in 200 mL of gel loading buffer. Invitrogen™ NuPAGE™ 4-12% Bis-Tris Gels or similar gel is prepared in gel apparatus. Samples are loaded and gel ran at 50-120 W, maintaining the apparatus at 40° C. When complete, the gel is exposed to ultraviolet (UV) light at 254 nm to visualize the purity of the RNA using UV shadowing. If necessary, the desired gel band is excised with a clean razor blade. The gel slice is crushed and 0.3M NaOAc elution buffer is added to the gel particles, and soaked overnight. The mixture is decanted and filtered through a Sephadex column such as Nap-10 or Nap-25.

Example 10: Deprotection of Synthesized TREM

This example describes the deprotection of a TREM made according to an in vitro synthesis method. The 2′-protecting groups are removed using 100 mM acetic acid, pH 3.8. The formic acid and ethylene glycol byproducts are removed by incubating at 60° C. for 30 min followed by lyophilization or SpeedVac-ing to dryness. After this final deprotection step, the oligonucleotides are ready for use.

Example 11. Characterization of Chemically Modified TREMs for Readthrough of a Premature Termination Codon (PTC) in a Reporter Protein

This example describes an assay to test the ability of a non-cognate chemically modified TREM to readthrough a PTC in a cell line expressing a reporter protein having a PTC. This Example describes analysis of chemically modified arginine, serine, and glutamine non-cognate TREM (i.e., Arg-TGA, Ser-TAG, and Gln-TAA), though a non-cognate TREM specifying any one of the othe amino acids can also be used.

A cell line engineered to stably express the NanoLuc reporter construct containing a premature termination codon (PTC) may be generated using the FlpIn system according to the manufacturer's instructions. Delivery of the chemically modified TREMs into the NanoLuc reporter cells is carried out via a reverse transfection reaction using lipofectamine RNAiMAX (ThermoFisher Scientific, USA) according to manufacturer instructions. Briefly, 5 uL of a 2.5 uM solution of chemically modified TREM sample are diluted in a 20 uL RNAiMAX/OptiMEM mixture. After 30 min gentle mixing at room temperature, the 25 uL TREM/transfection mixture is added to a 96-well plate and kept still for 20-30 min before adding the cells. The NanoLuc reporter cells are harvested and diluted to 4×10⁵ cells/mL in complete growth medium, and 100 uL of the diluted cell suspension is added and mixed to the plate containing the TREM. After 24 h, 100 uL complete growth medium is added to the 96-well plate for cell health.

To monitor the efficacy of the chemically modified TREM to read through the PTC in the reporter construct 48 hours after TREM delivery into cells, a NanoGlo bioluminescent assay (Promega, USA) may be performed according to manufacturer instruction. Briefly, cell media is replaced and allowed to equilibrate to room temperature. NanoGlo reagent is prepared by mixing the buffer with substrate in a 50:1 ratio. 50 uL of mixed NanoGlo reagent is added to the 96-well plate and mixed on the shaker at 600 rpm for 10 min. After 2 min, the plate is centrifuged at 1000 g, followed by a 5 min incubation step at room temperature before measuring sample bioluminescence. As a positive control, a host cell expressing the NanoLuc reporter construct without a PTC is used. As a negative control, a host cell expressing the NanoLuc reporter construct with a PTC is used, but no TREM is transfected. The efficacy of the chemically modified TREMs are measured as a ratio of the NanoLuc luminescence in the experimental sample to the NanoLuc luminescence of the positive control or as a ratio of the NanoLuc luminescence in the experimental sample to the NanoLuc luminescence of the negative control. It is expected that if the sample TREM is functional, it may be able to read-through the stop mutation in the NanoLuc reporter and produce a luminescent reading higher than the luminescent reading measured in the negative control. If the sample TREM is not functional, the stop mutation is not rescued, and luminescence less or equal to the negative control is detected.

The impacts of chemical modification type and position were evaluated in singly and multiply modified TREM sequences as outlined in Table 15-22 below. Tables 15-19 describe the activity of an exemplary chemically modified TREM-Arg-TGA sequence, in which 2′-OMe (Table 15), 2′-F (Table 16), 2′-MOE (Table 17), 2′-deoxy (Table 18), and PS (Table 19) modifications were installed at every position in the TREM sequence. Additional TREM sequences were also modified at every position with a 2′-OMe modification, namely Ser-TAG (Table 20) and Gln-TAA (Table 21). In addition, a selection of multiply modified TREM sequences were prepared according to Examples 1 and 9 and tested as outlined herein; these data are summarized in Table 22. In these tables, the sequences are annotated as follows: r: ribonucleotide; m: 2′-OMe; *: PS linkage; f: 2′-fluoro; moe: 2′-moe; d: deoxyribonucleotide; 5MeC: 5-methylcytosine. Thus, for example, mA represents 2′-O-methyl adenosine, moe5MeC represents 2′-MOE nucleotide with 5-methylcytosine nucleobase, and dA represents an adenosine deoxyribonucleotide.

In addition, in these tables, the results of the activity screen are reported as log 2 fold changes compared with the appropriate unmodified TREM, wherein “1” indicates less than a −0.05 log 2 fold change; “2” indicates greater than or equal to −0.05 and less than 0.55 log 2 fold change; and “3” indicates greater than or equal to 0.55 log 2 fold change. The results for the all the singly modified TREM-Arg-TGA screens is compared in FIG. 1 . The results show that certain modifications were tolerated at many positions, but particular sites were sensitive to modification or exhibited improved activity when modified. For example, neither 2′-OMe and 2′-MOE were tolerated at positions 33 in the Arg-TGA sequence, yet 2′-F and 2′-deoxy (DNA) improved the activity at positions 33. 2′OMe was particularly active at positions 1 and 73. 2′-deoxy (DNA) was also well tolerated at position 31. PS modification improved activity when incorporated in-between positions 35 and 36, in-between 37 and 38, in-between 38 and 39, in-between 54 and 55, and in-between positions 55 and 56.

TABLE 15 2′OMe-Modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 622 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24509.24 24508 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 623 OME 1 mGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24526.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 624 OME 2 rGmGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24516.6 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 625 OME 3 rGrGmCrUrCrCrGrUrGrGrCrGrCr 24523.24 24526.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 626 OME 4 rGrGrCmUrCrCrGrUrGrGrCrGrCr 24523.21 24517.6 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 627 OME 5 rGrGrCrUmCrCrGrUrGrGrCrGrCr 24523.24 24516.5 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 628 OME 6 rGrGrCrUrCmCrGrUrGrGrCrGrCr 24523.24 24511 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 629 OME 7 rGrGrCrUrCrCmGrUrGrGrCrGrCr 24523.24 24516.5 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 630 OME 8 rGrGrCrUrCrCrGmUrGrGrCrGrCr 24523.21 24511.6 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 631 OME 9 rGrGrCrUrCrCrGrUmGrGrCrGrCr 24523.24 24514.9 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 632 OME rGrGrCrUrCrCrGrUrGmGrCrGrCr 24523.24 24535.3 3 10 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 633 OME rGrGrCrUrCrCrGrUrGrGmCrGrCr 24523.24 24532.9 2 11 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 634 OME rGrGrCrUrCrCrGrUrGrGrCmGrCr 24523.24 24530.5 3 12 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 635 OME rGrGrCrUrCrCrGrUrGrGrCrGmCr 24523.24 24529.9 3 13 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 636 OME rGrGrCrUrCrCrGrUrGrGrCrGrCm 24523.24 24530 2 14 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 637 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531.3 2 15 AmArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 638 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24530.2 2 16 ArAmUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 639 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530 3 17 ArArUmGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 640 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530.3 3 18 ArArUrGmGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 641 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531 1 19 ArArUrGrGmArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 642 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24531.5 3 20 ArArUrGrGrAmUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 643 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24521.2 1 21 ArArUrGrGrArUmArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 644 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.8 3 22 ArArUrGrGrArUrAmGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 645 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.9 2 23 ArArUrGrGrArUrArGmCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 646 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.7 2 24 ArArUrGrGrArUrArGrCmGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 647 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.9 2 25 ArArUrGrGrArUrArGrCrGmCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 648 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.3 1 26 ArArUrGrGrArUrArGrCrGrCmAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 649 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.7 2 27 ArArUrGrGrArUrArGrCrGrCrAm UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 650 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.9 2 28 ArArUrGrGrArUrArGrCrGrCrAr UmUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 651 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.8 3 29 ArArUrGrGrArUrArGrCrGrCrAr UrUmGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 652 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530 3 30 ArArUrGrGrArUrArGrCrGrCrAr UrUrGmGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 653 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.8 1 31 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGmArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 654 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24522.68 24524.9 1 32 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrAmCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 655 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.9 1 33 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCmUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 656 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.8 1 34 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUmUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 657 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24522.68 24530 1 35 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUmCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 658 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.8 1 36 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCmArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 659 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530 1 37 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrAmArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 660 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.7 1 38 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArAmArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 661 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.7 1 39 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArAmUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 662 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24529.5 1 40 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUm UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 663 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531.3 2 41 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UmCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 664 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.9 3 42 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCmArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 665 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531.9 3 43 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrAmArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 666 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.6 2 44 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArAmArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 667 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531 3 45 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArAmGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 668 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531.6 1 46 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGmGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 669 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24530.5 1 47 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGmUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 670 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24511.6 2 48 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUmUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 671 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24514.6 2 49 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUmCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 672 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24512.7 3 50 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCmCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 673 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24519.7 2 51 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCmGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 674 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24517.3 3 52 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGmGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 675 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24520.5 2 53 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGm GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 676 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24516.7 2 54 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GmUrUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 677 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24521.6 1 55 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUmUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 678 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24515.3 3 56 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUmCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 679 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24523.7 2 57 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCmGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 680 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24516.6 1 58 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGmArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 681 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24532.2 3 59 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrAmGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 682 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24516.5 1 60 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGmUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 683 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24520.7 3 61 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUmCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 684 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24516.8 2 62 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCmCrCrGrGr CrGrGrArGrUrCrGrCrCrA 685 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24523.2 1 63 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCmCrGrGr CrGrGrArGrUrCrGrCrCrA 686 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24529.6 2 64 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCmGrGr CrGrGrArGrUrCrGrCrCrA 687 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530.9 3 65 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGmGr CrGrGrArGrUrCrGrCrCrA 688 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24523.2 3 66 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGm CrGrGrArGrUrCrGrCrCrA 689 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530 2 67 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC mGrGrArGrUrCrGrCrCrA 690 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24521.2 3 68 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGmGrArGrUrCrGrCrCrA 691 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530.4 3 69 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGmArGrUrCrGrCrCrA 692 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24521.1 1 70 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrAmGrUrCrGrCrCrA 693 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.21 24530.5 3 71 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGmUrCrGrCrCrA 694 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24520.2 3 72 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUmCrGrCrCrA 695 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24530.6 3 73 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCmGrCrCrA 696 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24519.1 2 74 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGmCrCrA 697 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24531.5 2 75 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCmCrA 698 OME rGrGrCrUrCrCrGrUrGrGrCrGrCr 24523.24 24520.2 2 76 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCmA

TABLE 16 2′F-Modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 699 F 1 fGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24513.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 700 F 2 rGfGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.7 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 701 F 3 rGrGfCrUrCrCrGrUrGrGrCrGrCr 24510.67 24509.1 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 702 F 4 rGrGrCfUrCrCrGrUrGrGrCrGrCr 24510.68 24514 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 703 F 5 rGrGrCrUfCrCrGrUrGrGrCrGrCr 24510.67 24515 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 704 F 6 rGrGrCrUrCfCrGrUrGrGrCrGrCr 24510.67 24513.8 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 705 F 7 rGrGrCrUrCrCfGrUrGrGrCrGrCr 24510.67 24516.7 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 706 F 8 rGrGrCrUrCrCrGfUrGrGrCrGrCr 24510.68 24517 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 707 F 9 rGrGrCrUrCrCrGrUfGrGrCrGrCr 24510.67 24518.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 708 F 10 rGrGrCrUrCrCrGrUrGfGrCrGrCr 24510.67 24518.2 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 709 F 11 rGrGrCrUrCrCrGrUrGrGfCrGrCr 24510.67 24517.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 710 F 12 rGrGrCrUrCrCrGrUrGrGrCfGrCr 24510.67 24518.1 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 711 F 13 rGrGrCrUrCrCrGrUrGrGrCrGfCr 24510.67 24518.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 712 F 14 rGrGrCrUrCrCrGrUrGrGrCrGrCf 24510.68 24518.1 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 713 F 15 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519.2 2 AfArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 714 F 16 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.5 2 ArAfUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 715 F 17 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.3 1 ArArUfGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 716 F 18 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.6 2 ArArUrGfGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 717 F 19 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24517.5 2 ArArUrGrGfArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 718 F 20 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.4 3 ArArUrGrGrAfUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 719 F 21 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519 1 ArArUrGrGrArUfArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 720 F 22 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.5 2 ArArUrGrGrArUrAfGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 721 F 23 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.2 2 ArArUrGrGrArUrArGfCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 722 F 24 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.3 1 ArArUrGrGrArUrArGrCfGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 723 F 25 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.6 2 ArArUrGrGrArUrArGrCrGfCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 724 F 26 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24514.8 1 ArArUrGrGrArUrArGrCrGrCfAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 725 F 27 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519.2 1 ArArUrGrGrArUrArGrCrGrCrAf UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 726 F 28 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.5 2 ArArUrGrGrArUrArGrCrGrCrAr UfUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 727 F 29 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.3 3 ArArUrGrGrArUrArGrCrGrCrAr UrUfGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 728 F 30 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.9 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGfGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 729 F 31 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24517.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGfArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 730 F 32 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.1 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrAfCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 731 F 33 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24517.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCfUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 732 F 34 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.8 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUfUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 733 F 35 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUfCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 734 F 36 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.7 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCfArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 735 F 37 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24517.6 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrAfArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 736 F 38 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArAfArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 737 F 39 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519.8 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArAfUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 738 F 40 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24508.1 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUf UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 739 F 41 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UfCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 740 F 42 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519.8 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCfArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 741 F 43 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.5 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrAfArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 742 F 44 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArAfArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 743 F 45 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArAfGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 744 F 46 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.8 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGfGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 745 F 47 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGfUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 746 F 48 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUfUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 747 F 49 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUfCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 748 F 50 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.6 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCfCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 749 F 51 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCfGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 750 F 52 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.1 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGfGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 751 F 53 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGf GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 752 F 54 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.9 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GfUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 753 F 55 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24520.3 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUfUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 754 F 56 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.6 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUfCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 755 F 57 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCfGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 756 F 58 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGfArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 757 F 59 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrAfGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 758 F 60 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.2 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGfUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 759 F 61 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUfCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 760 F 62 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.8 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCfCrCrGrGrC rGrGrArGrUrCrGrCrCrA 761 F 63 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCfCrGrGrC rGrGrArGrUrCrGrCrCrA 762 F 64 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCfGrGrC rGrGrArGrUrCrGrCrCrA 763 F 65 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGfGrC rGrGrArGrUrCrGrCrCrA 764 F 66 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24519.1 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGfC rGrGrArGrUrCrGrCrCrA 765 F 67 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC fGrGrArGrUrCrGrCrCrA 766 F 68 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGfGrArGrUrCrGrCrCrA 767 F 69 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24519.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGfArGrUrCrGrCrCrA 768 F 70 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.4 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrAfGrUrCrGrCrCrA 769 F 71 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24520.2 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGfUrCrGrCrCrA 770 F 72 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUfCrGrCrCrA 771 F 73 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24517.9 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCfGrCrCrA 772 F 74 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGfCrCrA 773 F 75 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.67 24518.2 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCfCrA 774 F 76 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24510.68 24518.3 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCfA

TABLE 17 2'MOE-Modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 775 MOE 1 moeGrGrCrUrCrCrGrUrGrGrCrGr 24566.69 24565.5 3 CrArArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 776 MOE 2 rGmoeGrCrUrCrCrGrUrGrGrCrGr 24566.69 24565.4 2 CrArArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 777 MOE 3 rGrGmoe5MeCrUrCrCrGrUrGrGr 24580.68 24580.5 2 CrGrCrArArUrGrGrArUrArGrCr GrCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 778 MOE 4 rGrGrCmoeTrCrCrGrUrGrGrCrGr 24580.69 24579.3 3 CrArArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 779 MOE 5 rGrGrCrUmoe5MeCrCrGrUrGrGr 24580.68 24579.6 1 CrGrCrArArUrGrGrArUrArGrCr GrCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 780 MOE 6 rGrGrCrUrCmoe5MeCrGrUrGrGr 24580.68 24579.6 2 CrGrCrArArUrGrGrArUrArGrCr GrCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 781 MOE rGrGrCrUrCrCrGrUrGmoeGrCrGr 24566.69 24568.3 2 10 CrArArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 782 MOE rGrGrCrUrCrCrGrUrGrGmoe5Me 24580.68 24579 1 11 CrGrCrArArUrGrGrArUrArGrCr GrCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 783 MOE rGrGrCrUrCrCrGrUrGrGrCmoeGr 24566.69 24566.6 2 12 CrArArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 784 MOE rGrGrCrUrCrCrGrUrGrGrCrGmoe 24580.68 24580 2 13 5MeCrArArUrGrGrArUrArGrCrG rCrArUrUrGrGrArCrUrUrCrArAr ArUrUrCrArArArGrGrUrUrCrCr GrGrGrUrUrCrGrArGrUrCrCrCrG rGrCrGrGrArGrUrCrGrCrCrA 785 MOE rGrGrCrUrCrCrGrUrGrGrCrGrC 24566.69 24567.7 3 14 moeArArUrGrGrArUrArGrCrGrCrA rUrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 786 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24561.7 3 15 AmoeArUrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 787 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24581.7 3 16 ArAmoeTrGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 788 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.4 3 17 ArArUmoeGrGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 789 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24568.6 2 18 ArArUrGmoeGrArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 790 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24563.8 1 19 ArArUrGrGmoeArUrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 791 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24580.2 3 20 ArArUrGrGrAmoeTrArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 792 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24565.4 1 21 ArArUrGrGrArUmoeArGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 793 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.2 1 22 ArArUrGrGrArUrAmoeGrCrGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 794 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24579.5 1 23 ArArUrGrGrArUrArGmoe5MeCr GrCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 795 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.3 1 24 ArArUrGrGrArUrArGrCmoeGrCr ArUrUrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 796 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24578.8 2 25 ArArUrGrGrArUrArGrCrGmoe5 MeCrArUrUrGrGrArCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 797 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24580.3 2 27 ArArUrGrGrArUrArGrCrGrCrAm oeTrUrGrGrArCrUrUrCrArArArU rUrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 798 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24582.9 1 28 ArArUrGrGrArUrArGrCrGrCrAr UmoeTrGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 799 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24568.3 3 29 ArArUrGrGrArUrArGrCrGrCrAr UrUmoeGrGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 800 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.7 2 30 ArArUrGrGrArUrArGrCrGrCrAr UrUrGmoeGrArCrUrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 801 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24580.4 1 32 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrAmoe5MeCrUrUrCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 802 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24574.5 1 33 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCmoeTrUrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 803 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24581.3 1 34 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUmoeTrCrArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 804 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24581 1 35 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUmoe5MeCrAr ArArUrUrCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 805 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.6 1 36 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCmoeArArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 806 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24572.4 1 37 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrAmoeArAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 807 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24561.6 1 38 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArAmoeAr UrUrCrArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 808 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24583.5 1 41 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr Umoe5MeCrArArArGrGrUrUrCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 809 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.9 1 42 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCmoeArArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 810 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.9 2 43 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrAmoeArArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 811 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.9 3 44 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArAmoeArGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 812 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24561 3 45 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArAmoeGrGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 813 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24560.1 1 46 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGmoeGrUrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 814 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24575.8 3 47 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGmoeTrUrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 815 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24580.5 1 48 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUmoeTrCrCrGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 816 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24578.4 3 49 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUmoe5MeCr CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 817 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24578.8 3 50 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCmoe5Me CrGrGrGrUrUrCrGrArGrUrCrCrC rGrGrCrGrGrArGrUrCrGrCrCrA 818 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.5 1 51 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCmoeGr GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 819 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.2 3 52 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGmoe GrGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 820 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.8 2 53 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrG moeGrUrUrCrGrArGrUrCrCrCrGrG rCrGrGrArGrUrCrGrCrCrA 821 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24582.3 3 54 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GmoeTrUrCrGrArGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 822 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24575.3 1 55 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUmoeTrCrGrArGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 823 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24581.5 3 56 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUmoe5MeCrGrArGrUrCrCr CrGrGrCrGrGrArGrUrCrGrCrCrA 824 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24565.3 3 57 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCmoeGrArGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 825 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24570.7 1 58 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGmoeArGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 826 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24562.1 3 59 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrAmoeGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 827 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24581 1 60 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGmoeTrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 828 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24579.7 1 61 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUmoe5MeCrCr CrGrGrCrGrGrArGrUrCrGrCrCrA 829 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24579.3 1 62 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCmoe5MeCr CrGrGrCrGrGrArGrUrCrGrCrCrA 830 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.3 1 64 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCmoeGr GrCrGrGrArGrUrCrGrCrCrA 831 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24563.6 3 65 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGmoe GrCrGrGrArGrUrCrGrCrCrA 832 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24577.9 1 66 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrG moe5MeCrGrGrArGrUrCrGrCrCrA 833 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24566.7 1 67 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC moeGrGrArGrUrCrGrCrCrA 834 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24567.3 2 68 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGmoeGrArGrUrCrGrCrCrA 835 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24565.9 1 69 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGmoeArGrUrCrGrCrCrA 836 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.69 24579.5 1 71 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGmoeTrCrGrCrCrA 837 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24583.5 3 72 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUmoe5MeCrGrCrCrA 838 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24569.6 3 73 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCmoeGrCrCrA 839 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24580.9 1 74 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGmoe5MeCrCrA 840 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24580.68 24579.7 2 75 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCmoe5MeCrA 841 MOE rGrGrCrUrCrCrGrUrGrGrCrGrCr 24566.69 24568.2 2 76 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCmoeA

TABLE 18 2′-Deoxy-Modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 842 DNA 1 dGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24493.1 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 843 DNA 2 rGdGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24493 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 844 DNA 3 rGrGdCrUrCrCrGrUrGrGrCrGrCr 24492.71 24491.8 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 845 DNA 4 rGrGrCdUrCrCrGrUrGrGrCrGrCr 24492.69 24490.9 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 846 DNA 5 rGrGrCrUdCrCrGrUrGrGrCrGrCr 24492.71 24492.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 847 DNA 6 rGrGrCrUrCdCrGrUrGrGrCrGrCr 24492.71 24491.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 848 DNA 7 rGrGrCrUrCrCdGrUrGrGrCrGrCr 24492.69 24492.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 849 DNA 8 rGrGrCrUrCrCrGdUrGrGrCrGrCr 24492.69 24493.5 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 850 DNA 9 rGrGrCrUrCrCrGrUdGrGrCrGrCr 24492.69 24491.2 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 851 DNA rGrGrCrUrCrCrGrUrGdGrCrGrCr 10 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24491.9 1 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 852 DNA rGrGrCrUrCrCrGrUrGrGdCrGrCr 11 ArArUrGrGrArUrArGrCrGrCrAr 24492.71 24491.5 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 853 DNA rGrGrCrUrCrCrGrUrGrGrCdGrCr 12 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24491.4 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 854 DNA rGrGrCrUrCrCrGrUrGrGrCrGdCr 13 ArArUrGrGrArUrArGrCrGrCrAr 24492.71 24491.6 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 855 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCd 14 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24497.4 3 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 856 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24497.3 3 15 AdArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 857 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 16 ArAdUrGrGrArUrArGrCrGrCrAr 24492.69 24497.3 3 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 858 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 17 ArArUdGrGrArUrArGrCrGrCrAr 24492.69 24497.3 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 859 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 18 ArArUrGdGrArUrArGrCrGrCrAr 24492.69 24492.7 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 860 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 19 ArArUrGrGdArUrArGrCrGrCrAr 24492.69 24497.3 1 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 861 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 20 ArArUrGrGrAdUrArGrCrGrCrAr 24492.69 24497.8 3 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 862 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 21 ArArUrGrGrArUdArGrCrGrCrAr 24492.69 24494.8 1 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 863 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.2 3 22 ArArUrGrGrArUrAdGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 864 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24491.7 3 23 ArArUrGrGrArUrArGdCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 865 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24 ArArUrGrGrArUrArGrCdGrCrAr 24492.69 24490.7 1 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 866 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 25 ArArUrGrGrArUrArGrCrGdCrAr 24492.71 24491.8 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 867 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24494.3 2 26 ArArUrGrGrArUrArGrCrGrCdAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 868 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24504.9 2 27 ArArUrGrGrArUrArGrCrGrCrAd UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 869 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24493.8 1 28 ArArUrGrGrArUrArGrCrGrCrAr UdUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 870 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24494.2 2 29 ArArUrGrGrArUrArGrCrGrCrAr UrUdGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 871 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24492.6 2 30 ArArUrGrGrArUrArGrCrGrCrAr UrUrGdGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 872 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24492.2 1 31 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGdArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 873 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24490.7 2 32 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrAdCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 874 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.5 3 33 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCdUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 875 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.7 1 34 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUdUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 876 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24494.9 1 35 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUdCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 877 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491 1 36 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCdArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 878 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24495.2 1 37 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrAdArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 879 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24494.4 2 38 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArAdArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 880 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.5 1 39 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArAdUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 881 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.2 2 40 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUd UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 882 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24494.2 2 41 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UdCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 883 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.6 2 42 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCdArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 884 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24493.7 1 43 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrAdArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 885 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.4 2 44 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArAdArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 886 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24493.1 1 45 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArAdGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 887 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24494 1 46 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGdGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 888 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.1 2 47 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGdUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 889 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490 2 48 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUdUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 890 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24494.4 2 49 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUdCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 891 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24494 1 50 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCdCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 892 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24497.3 1 51 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCdGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 893 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.9 1 52 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGdGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 894 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.3 1 53 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGd GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 895 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24489.7 3 54 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GdUrUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 896 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.8 1 55 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUdUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 897 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 56 ArArUrGrGrArUrArGrCrGrCrAr 24492.71 24493 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUdCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 898 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 57 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24494.9 1 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCdGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 899 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 58 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24493.4 2 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGdArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 900 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 59 ArArUrGrGrArUrArGrCrGrCrAr 24492.69 24491.3 3 UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrAdGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 901 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.3 2 60 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGdUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 902 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24493.3 2 61 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUdCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 903 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24494.6 3 62 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCdCrCrGrGr CrGrGrArGrUrCrGrCrCrA 904 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24491.7 3 63 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCdCrGrGr CrGrGrArGrUrCrGrCrCrA 905 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.8 2 64 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCdGrGr CrGrGrArGrUrCrGrCrCrA 906 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.9 2 65 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGdGr CrGrGrArGrUrCrGrCrCrA 907 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24491.5 2 66 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGd CrGrGrArGrUrCrGrCrCrA 908 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.5 2 67 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC dGrGrArGrUrCrGrCrCrA 909 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24490.5 1 68 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGdGrArGrUrCrGrCrCrA 910 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24494.2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGdArGrUrCrGrCrCrA 911 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24500.8 2 70 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrAdGrUrCrGrCrCrA 912 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24491.1 2 71 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGdUrCrGrCrCrA 913 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24501.2 3 72 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUdCrGrCrCrA 914 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24501.4 1 73 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCdGrCrCrA 915 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24499.8 2 74 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGdCrCrA 916 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.71 24501.9 2 75 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCdCrA 917 DNA rGrGrCrUrCrCrGrUrGrGrCrGrCr 24492.69 24501.9 3 76 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCdA

TABLE 19 Phosphorothioate-Modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 918 PS 1 rG*rGrCrUrCrCrGrUrGrGrCrGrC 24525.3 24528.7 3 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 919 PS 2 rGrG*rCrUrCrCrGrUrGrGrCrGrC 24525.3 24532.7 3 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 920 PS 3 rGrGrC*rUrCrCrGrUrGrGrCrGrC 24525.3 24521.1 3 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 921 rGrGrCrU*rCrCrGrUrGrGrCrGrC 24524.68 24532.3 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 922 rGrGrCrUrC*rCrGrUrGrGrCrGrC 24524.68 24532.4 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 923 PS 6 rGrGrCrUrCrC*rGrUrGrGrCrGrC 24524.68 24529.8 1 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 924 rGrGrCrUrCrCrG*rUrGrGrCrGrC 24524.68 24530.4 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 925 PS 8 rGrGrCrUrCrCrGrU*rGrGrCrGrC 24524.68 24529.8 1 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 926 PS 9 rGrGrCrUrCrCrGrUrG*rGrCrGrC 24524.68 24531.1 3 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 927 PS 10 rGrGrCrUrCrCrGrUrGrG*rCrGrC 24524.68 24529.8 2 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 928 PS 11 rGrGrCrUrCrCrGrUrGrGrC*rGrC 24524.68 24532.4 1 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 929 PS 12 rGrGrCrUrCrCrGrUrGrGrCrG*rC 24524.68 24531.2 1 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 930 PS 13 rGrGrCrUrCrCrGrUrGrGrCrGrC* 24524.68 24529.9 1 rArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 931 PS 14 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 A*rArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 932 PS 15 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24531.5 3 ArA*rUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 933 PS 16 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 ArArU*rGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 934 PS 17 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 ArArUrG*rGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 935 PS 18 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 ArArUrGrG*rArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 936 PS 19 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24525.3 24519.6 3 ArArUrGrGrA*rUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 937 PS 20 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 ArArUrGrGrArU*rArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 938 PS 21 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530 3 ArArUrGrGrArUrA*rGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 939 PS 22 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24531.5 2 ArArUrGrGrArUrArG*rCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 940 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.5 ArArUrGrGrArUrArGrC*rGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 941 PS 24 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24531.9 2 ArArUrGrGrArUrArGrCrG*rCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 942 PS 25 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.8 2 ArArUrGrGrArUrArGrCrGrC*rAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 943 PS 26 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24531.4 2 ArArUrGrGrArUrArGrCrGrCrA*r UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 944 PS 27 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.8 2 ArArUrGrGrArUrArGrCrGrCrAr U*rUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 945 PS 28 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrU*rGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 946 PS 29 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrG*rGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 947 PS 30 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrG*rArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 948 PS 31 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrA*rCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 949 PS 32 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24523.9 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArC*rUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 950 PS 33 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24518.8 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrU*rUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 951 PS 34 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.9 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrU*rCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 952 PS 35 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.8 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrC*rArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 953 PS 36 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24518.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrA*rArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 954 PS 37 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArA*rArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 955 PS 38 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24519.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArA*rUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 956 PS 39 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.7 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArU*r UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 957 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.8 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr U*rCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 958 PS 41 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.9 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrC*rArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 959 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.8 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrA*rArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 960 PS 43 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.4 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArA*rArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 961 PS 44 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24518.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArA*rGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 962 PS 45 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArG*rGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 963 PS 46 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24520.2 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrG*rUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 964 PS 47 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrU*rUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 965 PS 48 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24518.7 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrU*rCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 966 PS 49 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrC*rCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 967 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.4 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrC*rGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 968 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.8 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrG*rGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 969 PS 52 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24526 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrG*r GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrCrA 970 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.7 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr G*rUrUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 971 PS 54 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrU*rUrCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 972 PS 55 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.7 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrU*rCrGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 973 PS 56 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrC*rGrArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 974 PS 57 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.5 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrG*rArGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 975 PS 58 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24525.3 24520.8 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrA*rGrUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 976 PS 59 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.8 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArG*rUrCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 977 PS 60 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrU*rCrCrCrGrGr CrGrGrArGrUrCrGrCrCrA 978 PS 61 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24529.4 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrC*rCrCrGrGr CrGrGrArGrUrCrGrCrCrA 979 PS 62 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24530.7 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrC*rCrGrGr CrGrGrArGrUrCrGrCrCrA 980 PS 63 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24528.3 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrC*rGrGr CrGrGrArGrUrCrGrCrCrA 981 PS 64 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.9 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrG*rGr CrGrGrArGrUrCrGrCrCrA 982 PS 65 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24523.8 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrG*r CrGrGrArGrUrCrGrCrCrA 983 PS 66 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.4 1 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC *rGrGrArGrUrCrGrCrCrA 984 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.7 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rG*rGrArGrUrCrGrCrCrA 985 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrG*rArGrUrCrGrCrCrA 986 PS 69 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24522.6 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrA*rGrUrCrGrCrCrA 987 PS 70 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24524.9 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArG*rUrCrGrCrCrA 988 PS 71 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24525.1 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrU*rCrGrCrCrA 989 PS 72 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24524.68 24525.3 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrC*rGrCrCrA 990 PS 73 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24525.3 24520.4 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrG*rCrCrA 991 PS 74 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24525.3 24533.1 3 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrC*rCrA 992 PS 75 rGrGrCrUrCrCrGrUrGrGrCrGrCr 24525.3 24533.2 2 ArArUrGrGrArUrArGrCrGrCrAr UrUrGrGrArCrUrUrCrArArArUr UrCrArArArGrGrUrUrCrCrGrGr GrUrUrCrGrArGrUrCrCrCrGrGrC rGrGrArGrUrCrGrCrC*rA

TABLE 20 2′OMe-Modified TREMs (TREM-Ser-TAG) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 993 rGrArCrGrArGrGrUrGrGrCrCrGr 27323.32 27329.5 2 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 994 OME 1 mGrArCrGrArGrGrUrGrGrCrCrG 27337.32 27343.3 3 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 995 OME 2 rGmArCrGrArGrGrUrGrGrCrCrG 27337.32 27342.9 2 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 996 OME 3 rGrAmCrGrArGrGrUrGrGrCrCrG 27337.32 27342.3 1 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 997 OME 4 rGrArCmGrArGrGrUrGrGrCrCrG 27337.32 27339.3 3 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 998 OME 5 rGrArCrGmArGrGrUrGrGrCrCrG 27337.32 27338.7 3 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 999 OME 6 rGrArCrGrAmGrGrUrGrGrCrCrG 27337.32 27338.8 1 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1000 OME 7 rGrArCrGrArGmGrUrGrGrCrCrG 27337.32 27341.2 1 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1001 OME 8 rGrArCrGrArGrGmUrGrGrCrCrG 27337.32 27341.4 1 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1002 OME 9 rGrArCrGrArGrGrUmGrGrCrCrG 27337.32 27338.5 1 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1003 OME rGrArCrGrArGrGrUrGmGrCrCrG 27337.32 27338.4 2 10 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1004 OME rGrArCrGrArGrGrUrGrGmCrCrG 27337.32 27339.3 1 11 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1005 OME rGrArCrGrArGrGrUrGrGrCmCrG 27337.32 27336.2 1 12 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1006 OME rGrArCrGrArGrGrUrGrGrCrCmG 27337.32 27344.3 1 13 rArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1007 OME rGrArCrGrArGrGrUrGrGrCrCrG 27337.32 27332.8 1 14 mArGrUrGrGrUrUrArArGrGrCrG rArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1008 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 1 15 AmGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1009 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.7 1 16 ArGmUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1010 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338 2 17 ArGrUmGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1011 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27339 2 18 ArGrUrGmGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1012 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.1 1 19 ArGrUrGrGmUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1013 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.2 1 20 ArGrUrGrGrUmUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1014 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.3 1 21 ArGrUrGrGrUrUmArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1015 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337 1 22 ArGrUrGrGrUrUrAmArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1016 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.3 1 23 ArGrUrGrGrUrUrArAmGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1017 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27340.9 2 24 ArGrUrGrGrUrUrArArGmGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1018 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.8 1 25 ArGrUrGrGrUrUrArArGrGmCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1019 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.8 1 26 ArGrUrGrGrUrUrArArGrGrCmGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1020 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27339.7 2 27 ArGrUrGrGrUrUrArArGrGrCrGm ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1021 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.9 1 28 ArGrUrGrGrUrUrArArGrGrCrGr AmUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1022 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.8 2 29 ArGrUrGrGrUrUrArArGrGrCrGr ArUmGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1023 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.5 2 30 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGmGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1024 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 1 31 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGmArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1025 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27340.4 2 32 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrAmCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1026 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.2 1 33 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCmUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1027 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.4 3 34 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUmCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1028 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.8 1 35 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCmUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1029 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.1 1 36 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUmArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1030 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338 1 37 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrAmArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1031 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27340.8 3 38 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArAmArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1032 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 3 39 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArAmUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1033 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.6 2 40 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUm CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCrA 1034 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337 2 41 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CmCrArUrUrGrUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1035 rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCmArUrUrGrUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1036 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.3 2 43 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrAmUrUrGrUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1037 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.3 1 44 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUmUrGrUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1038 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.1 1 45 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUmGrUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1039 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.3 2 46 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGmUrGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1040 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.2 2 47 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUmGrCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1041 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338 1 48 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGmCrUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1042 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.6 1 49 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCmUrCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1043 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.8 1 50 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUmCrUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1044 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.4 1 51 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCmUrGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1045 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.7 1 52 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUmGr CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1046 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27341.4 1 53 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGm CrArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1047 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27341.3 1 54 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC mArCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1048 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.6 1 55 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rAmCrGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1049 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 1 56 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCmGrCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1050 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.1 1 57 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGmCrGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1051 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.6 1 58 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCmGrUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1052 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.6 2 59 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGmUrGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1053 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.7 1 60 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUmGrGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1054 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.4 3 61 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGmGrGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1055 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.2 1 62 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGmGrUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1056 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.3 1 63 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGmUrUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1057 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.9 1 64 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUmUrCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1058 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.2 1 65 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUmCrG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1059 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336 1 66 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCmG rArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1060 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.5 1 67 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrG mArArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1061 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.9 1 68 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr AmArUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1062 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27341.1 1 69 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArAmUrCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1063 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.9 1 70 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUmCrCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1064 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.1 1 71 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCmCrCrArUrCrCrUrCrGr UrCrGrCrCrA 1065 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.7 1 72 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCmCrArUrCrCrUrCrGr UrCrGrCrCrA 1066 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.4 2 73 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCmArUrCrCrUrCrGr UrCrGrCrCrA 1067 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.8 1 74 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrAmUrCrCrUrCrGr UrCrGrCrCrA 1068 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338 1 75 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUmCrCrUrCrGr UrCrGrCrCrA 1069 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.6 1 76 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCmCrUrCrGr UrCrGrCrCrA 1070 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27335.9 1 77 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCmUrCrGr UrCrGrCrCrA 1071 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.9 1 78 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUmCrGr UrCrGrCrCrA 1072 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.1 3 79 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCmGr UrCrGrCrCrA 1073 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.1 3 80 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGm UrCrGrCrCrA 1074 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336.5 2 81 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU mCrGrCrCrA 1075 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27336 3 82 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCmGrCrCrA 1076 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.4 1 83 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGmCrCrA 1077 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27338.7 1 84 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCmCrA 1078 OME rGrArCrGrArGrGrUrGrGrCrCrGr 27337.32 27337.9 1 85 ArGrUrGrGrUrUrArArGrGrCrGr ArUrGrGrArCrUrCrUrArArArUr CrCrArUrUrGrUrGrCrUrCrUrGrC rArCrGrCrGrUrGrGrGrUrUrCrGr ArArUrCrCrCrArUrCrCrUrCrGrU rCrGrCrCmA

TABLE 21 2′ OMe-Modified TREMs (TREM-Gln-TAA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 1079 rGrGrUrUrCrCrArUrGrGrUrGrUr 24055.37 24059.2 2 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1080 OME 1 mGrGrUrUrCrCrArUrGrGrUrGrU 24069.37 24071.7 3 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1081 OME 2 rGmGrUrUrCrCrArUrGrGrUrGrU 24069.37 24073.8 2 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1082 OME 3 rGrGmUrUrCrCrArUrGrGrUrGrU 24069.37 24069.7 1 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1083 OME 4 rGrGrUmUrCrCrArUrGrGrUrGrU 24069.37 24073 3 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1084 OME 5 rGrGrUrUmCrCrArUrGrGrUrGrU 24069.37 24071.3 2 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1085 OME 6 rGrGrUrUrCmCrArUrGrGrUrGrU 24069.37 24074.2 1 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1086 OME 7 rGrGrUrUrCrCmArUrGrGrUrGrU 24069.37 24074 1 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1087 OME 8 rGrGrUrUrCrCrAmUrGrGrUrGrU 24069.37 24069 1 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1088 OME 9 rGrGrUrUrCrCrArUmGrGrUrGrU 24069.37 24070.3 1 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1089 OME rGrGrUrUrCrCrArUrGmGrUrGrU 24069.37 24069.2 2 10 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1090 OME rGrGrUrUrCrCrArUrGrGmUrGrU 24069.37 24069.4 1 11 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1091 OME rGrGrUrUrCrCrArUrGrGrUmGrU 24069.37 24068.5 3 12 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1092 OME rGrGrUrUrCrCrArUrGrGrUrGmU 24069.37 24068.4 3 13 rArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1093 OME rGrGrUrUrCrCrArUrGrGrUrGrU 24069.37 24070.9 2 14 mArArUrGrGrUrArArGrCrArCrU rCrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1094 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.3 2 15 AmArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1095 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.5 2 16 ArAmUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1096 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.6 3 17 ArArUmGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1097 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.4 3 18 ArArUrGmGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1098 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.3 1 19 ArArUrGrGmUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1099 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074 1 20 ArArUrGrGrUmArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1100 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.8 1 21 ArArUrGrGrUrAmArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1101 rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.9 ArArUrGrGrUrArAmGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1102 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 3 23 ArArUrGrGrUrArArGmCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1103 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24075.6 1 24 ArArUrGrGrUrArArGrCmArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1104 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.4 1 25 ArArUrGrGrUrArArGrCrAmCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1105 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 1 26 ArArUrGrGrUrArArGrCrArCmUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1106 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 2 27 ArArUrGrGrUrArArGrCrArCrUm CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1107 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 3 28 ArArUrGrGrUrArArGrCrArCrUr CmUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1108 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.7 3 29 ArArUrGrGrUrArArGrCrArCrUr CrUmGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1109 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.5 3 30 ArArUrGrGrUrArArGrCrArCrUr CrUrGmGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1110 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.2 1 31 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGmArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1111 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.1 1 32 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrAmCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1112 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.7 1 33 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCmUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1113 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.4 2 34 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUmUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1114 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.7 1 35 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUmUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1115 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.3 1 36 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUmArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1116 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.3 1 37 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrAmArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1117 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 3 38 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArAmArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1118 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.6 3 39 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArAmUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1119 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.3 2 40 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUm CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCrA 1120 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074 3 41 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CmCrArGrCrGrArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1121 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.6 2 42 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCmArGrCrGrArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1122 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.3 1 43 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrAmGrCrGrArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1123 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.6 3 44 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGmCrGrArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1124 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.5 1 45 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCmGrArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1125 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.5 1 46 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGmArUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1126 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.8 1 47 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrAmUrCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1127 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.2 3 48 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUmCrCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1128 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.5 3 49 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCmCrGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1129 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24073.5 2 50 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCmGrArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1130 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24074.5 3 51 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGmArGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1131 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24072.4 3 52 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrAmGr UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1132 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24069.5 3 53 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGm UrUrCrGrArGrUrCrUrCrGrGrUr GrGrArArCrCrUrCrCrA 1133 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.7 1 54 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU mUrCrGrArGrUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1134 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.3 2 55 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUmCrGrArGrUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1135 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24069.5 2 56 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCmGrArGrUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1136 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.2 1 57 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGmArGrUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1137 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.8 3 58 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrAmGrUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1138 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.2 1 59 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGmUrCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1139 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068 3 60 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUmCrUrCrGrGrUrG rGrArArCrCrUrCrCrA 1140 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.1 3 61 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCmUrCrGrGrUrG rGrArArCrCrUrCrCrA 1141 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.1 1 62 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUmCrGrGrUrG rGrArArCrCrUrCrCrA 1142 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.6 3 63 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCmGrGrUrG rGrArArCrCrUrCrCrA 1143 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24069.3 3 64 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGmGrUrG rGrArArCrCrUrCrCrA 1144 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.3 3 65 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGmUrG rGrArArCrCrUrCrCrA 1145 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.7 3 66 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUmG rGrArArCrCrUrCrCrA 1146 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067 2 67 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrG mGrArArCrCrUrCrCrA 1147 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24068.3 3 68 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GmArArCrCrUrCrCrA 1148 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.6 3 69 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrAmArCrCrUrCrCrA 1149 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067 1 70 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArAmCrCrUrCrCrA 1150 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.2 3 71 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCmCrUrCrCrA 1151 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24066.9 3 72 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCmUrCrCrA 1152 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067 3 73 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUmCrCrA 1153 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.6 3 74 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCmCrA 1154 OME rGrGrUrUrCrCrArUrGrGrUrGrUr 24069.37 24067.3 3 75 ArArUrGrGrUrArArGrCrArCrUr CrUrGrGrArCrUrUrUrArArArUr CrCrArGrCrGrArUrCrCrGrArGrU rUrCrGrArGrUrCrUrCrGrGrUrGr GrArArCrCrUrCrCmA

TABLE 22 Additional modified TREMs (TREM-Arg-TGA) and related data SEQ Calculated Detected ID NO. Mod Sequence MW MW Results 1155 CCA rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23569.11 23574.5 3 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCr G 1156 m1 ,m73 mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24536.69 24536.1 3 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm GrCrCrA 1157 m1, m52, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24550.69 24548.1 3 m73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGmGrGrUrUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC mGrCrCrA 1158 m1, m50, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24564.69 24564.3 3 m52, m73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCmCrGmGrGrUrUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC mGrCrCrA 1159 m1, m18, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24578.69 24585.7 3 m50, m52, ArUrGmGrArUrArGrCrGrCrArUrUr m73 GrGrArCrUrUrCrArArArUrUrCrArA rArGrGrUrUrCmCrGmGrGrUrUrCrG rArGrUrCrCrCrGrGrCrGrGrArGrUr CmGrCrCrA 1160 m8, m52 rGrGrCrUrCrCrGmUrGrGrCrGrCrAr 24536.69 24536.7 3 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGmGrGrUrUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC rGrCrCrA 1161 m1, m17, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24592.7 24591.3 3 m18, m50, ArUmGmGrArUrArGrCrGrCrArUrU m52, m73 rGrGrArCrUrUrCrArArArUrUrCrAr ArArGrGrUrUrCmCrGmGrGrUrUrCr GrArGrUrCrCrCrGrGrCrGrGrArGrU rCmGrCrCrA 1162 m39, m52 rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24536.69 24539.1 2 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArAmUrUrCrArAr ArGrGrUrUrCrCrGmGrGrUrUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC rGrCrCrA 1163 m52, m62 rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24536.68 24535.5 3 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGmGrGrUrUrCrGr ArGrUrCmCrCrGrGrCrGrGrArGrUr CrGrCrCrA 1164 moe (1); moeG*rGrCrUrCrCrGrUrGrGrCrGrC 24582.69 24581.7 3 PS (1) rArArUrGrGrArUrArGrCrGrCrArUr UrGrGrArCrUrUrCrArArArUrUrCrA rArArGrGrUrUrCrCrGrGrGrUrUrCr GrArGrUrCrCrCrGrGrCrGrGrArGrU rCrGrCrCrA 1165 m (1); mG*rGrCrUrCrCrGrUrGrGrCrGrCrA 24538.69 24545.5 3 PS (1) rArUrGrGrArUrArGrCrGrCrArUrUr GrGrArCrUrUrCrArArArUrUrCrArA rArGrGrUrUrCrCrGrGrGrUrUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC rGrCrCrA 1166 m (1); mG*rG*rCrUrCrCrGrUrGrGrCrGrCr 24586.69 24594.9 3 PS (1, 2, ArArUrGrGrArUrArGrCrGrCrArUrU 74, 75) rGrGrArCrUrUrCrArArArUrUrCrAr ArArGrGrUrUrCrCrGrGrGrUrUrCrG rArGrUrCrCrCrGrGrCrGrGrArGrUr CrGrC*rC*rA 1167 m (1, 2); mG*mG*rCrUrCrCrGrUrGrGrCrGrC 24600.69 24603.5 3 PS (1, 2, rArArUrGrGrArUrArGrCrGrCrArUr 74, 75) UrGrGrArCrUrUrCrArArArUrUrCrA rArArGrGrUrUrCrCrGrGrGrUrUrCr GrArGrUrCrCrCrGrGrCrGrGrArGrU rCrGrC*rC*rA 1168 m (1, 2, mG*mG*rCrUrCrCrGrUrGrGrCrGrC 24628.68 24632.7 3 74, 75); rArArUrGrGrArUrArGrCrGrCrArUr PS (1, 2, UrGrGrArCrUrUrCrArArArUrUrCrA 74, 75) rArArGrGrUrUrCrCrGrGrGrUrUrCr GrArGrUrCrCrCrGrGrCrGrGrArGrU rCrGmC*mC*rA 1169 m (1, 2, mG*mG*rCrUrCrCrGrUrGrGrCrGrC 24642.69 24646.2 3 74, 75, rArArUrGrGrArUrArGrCrGrCrArUr 76); PS UrGrGrArCrUrUrCrArArArUrUrCrA (1, 2, rArArGrGrUrUrCrCrGrGrGrUrUrCr 74, 75) GrArGrUrCrCrCrGrGrCrGrGrArGrU rCrGmC*mC*mA 1170 mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24634.7 24632.6 3 ArUrGrGrArUrArGrCrGrCrArUrUm GmGrArCrUrUrCrArArArUrUrCrAr ArArGrGrUrUrCmCrGmGrGrUrUm CrGrArGrUrCrCrCrGmGrCrGrGrAr GmUrCmGrCrCrA 1171 mGrGrCmUrCrCrGrUrGrGrCrGrCrA 24662.7 24667.1 2 rArUrGrGrAmUrArGrCrGrCrArUrU mGmGrArCrUrUrCrArArArUrUrCrA rArArGrGrUrUrCmCrGmGrGrUrUm CrGrArGrUrCrCrCrGmGrCrGrGrAr GmUrCmGrCrCrA 1172 mGrGrCmUrCrCrGrUrGrGrCrGmCr 24774.7 24779.4 3 ArArUmGmGrAmUrArGrCrGmCrAr UrUmGmGrArCrUrUrCrArArArUrU rCrArArArGrGrUrUmCmCrGmGrGr UrUmCrGrAmGrUrCrCrCrGmGrCrG rGmArGmUmCmGrCrCrA 1173 mGrGrCmUrCrCrGrUrGmGmCmGm 24872.7 24881.5 1 CrArArUmGmGrAmUrArGrCrGmCr ArUrUmGmGrArCrUrUrCrArArArU rUrCrArArAmGrGrUrUmCmCrGmG rGrUrUmCrGrAmGrUmCrCrCrGmG mCrGmGmArGmUmCmGrCrCrA 1174 mGrGrCmUrCmCrGrUrGmGmCmG 24984.71 24992.1 1 mCrArArUmGmGrAmUrAmGrCrG mCrArUrUmGmGrArCrUrUrCrArAr ArUrUmCmAmArAmGrGrUrUmCm CrGmGrGrUrUmCrGrAmGrUmCmC rCrGmGmCmGmGmArGmUmCmGr CrCmA 1175 N-1; rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24193.48 24197.4 m73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm GrCrC 1176 N-2; rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23888.3 23889.2 3 m73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm GrC 1177 N-3; rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23583.11 23583.8 1 m73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm G 1178 N-3, m1, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23597.12 23598.2 1 73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm G 1179 N-2; m1, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23902.3 23904.4 3 73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm GrC 1180 N-1; m1, mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 24207.48 24208.3 3 73 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCm GrCrC 1181 m1-6, mGmGmCmUmCmCrGrUrGmGmC 24774.69 24779.6 3 DS1, mGmCrArArUrGrGrArUrAmGmCm DS2, TS1 GmCrArUrUrGrGrArCrUrUrCrArAr ArUrUrCrArArArGrGrUrUmCmCm GmGmGrUrUrCrGrArGrUrCrCrCrGr GrCrGrGrArGrUrCrGrCrCrA 1182 m1- mGmGmCmUmCmCrGrUrGmGmC 24788.69 24782.3 3 6, DS1, mGmCrArArUrGrGrArUrAmGmCm DS2, GmCrArUrUrGrGrArCrUrUrCrArAr TS1, ArUrUrCrArArArGrGrUrUmCmCm m73 GmGmGrUrUrCrGrArGrUrCrCrCrGr GrCrGrGrArGrUrCmGrCrCrA 1183 N-3, mGmGmCmUmCmCrGrUrGmGmC 23849.11 23854.6 1 m1- mGmCrArArUrGrGrArUrAmGmCm 6, DS1, GmCrArUrUrGrGrArCrUrUrCrArAr DS2, ArUrUrCrArArArGrGrUrUmCmCm TS1, GmGmGrUrUrCrGrArGrUrCrCrCrGr m73 GrCrGrGrArGrUrCmG 1184 N-3, m1 mGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23583.11 23587.8 3 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrUrCrGrA rGrUrCrCrCrGrGrCrGrGrArGrUrCr G 1185 N-3,  mGmGmCmUmCmCrGrUrGrGrCrGr 23653.11 23646.8 3 m1-6 CrArArUrGrGrArUrArGrCrGrCrArU rUrGrGrArCrUrUrCrArArArUrUrCr ArArArGrGrUrUrCrCrGrGrGrUrUrC rGrArGrUrCrCrCrGrGrCrGrGrArGr UrCrG 1186 N-3, PS rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23585.11 23589.6 3 54 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrU*rUrCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC rG 1187 N-3, PS rGrGrCrUrCrCrGrUrGrGrCrGrCrAr 23585.11 23589.9 55 ArUrGrGrArUrArGrCrGrCrArUrUrG rGrArCrUrUrCrArArArUrUrCrArAr ArGrGrUrUrCrCrGrGrGrUrU*rCrGr ArGrUrCrCrCrGrGrCrGrGrArGrUrC rG

Example 12: Correction of a Missense Mutation in an ORF with Administration of a TREM

This example describes the administration of a TREM to correct a missense mutation. In this example, a TREM translates a reporter with a missense mutation into a wild type (WT) protein by incorporation of the WT amino acid (at the missense position) in the protein.

Host Cell Modification

A cell line stably expressing a GFP reporter construct containing a missense mutation, for example T203I or E222G, which prevent GFP excitation at the 470 nm and 390 nm wavelengths, is generated using the FlpIn system according to manufacturer's instructions. Briefly, HEK293T (293T ATCC® CRL-3216) cells are co-transfected with an expression vector containing a GFP reporter with a missense mutation, such as pcDNA5/FRT-NanoLuc-TAA and a pOG44 Flp-Recombinase expression vector using Lipofectamine2000 according to manufacturer's instructions. After 24 hours, the media is replaced with fresh media. The next day, the cells are split 1:2 and selected with 100 ug/mL Hygromycin for 5 days. The remaining cells are expanded and tested for reporter construct expression.

Synthesis and Preparation of TREM

The TREM is synthesized as described in Example 1 and quality control methods as described in Examples 7-9 are performed. To ensure proper folding, the TREM is heated at 85° C. for 2 minutes and then snap cooled at 4° C. for 5 minutes.

Transfection of Non-Cognate TREM into Host Cells

To deliver the TREM to mammalian cells, 100 nM of TREM is transfected into cells expressing the ORF having a missense mutation using lipofectamine 2000 reagents according to the manufacturer's instructions. After 6-18 hours, the transfection media is removed and replaced with fresh complete media.

Missense Mutation Correction Assay

To monitor the efficacy of the TREM to correct the missense mutation in the reporter construct, 24-48 hours after TREM transfection, cell media is replaced, and cell fluorescence is measured. As a negative control, no TREM is transfected in the cells and as a positive control, cells expressing WT GFP are used for this assay. If the TREM is functional, it is expected that the GFP protein produced fluoresces when illuminated with a 390 nm excitation wavelength using a fluorimeter, as observed in the positive control. If the TREM is not functional, the GFP protein produced fluoresces only when excited with a 470 nm wavelength, as is observed in the negative control.

Example 13: Evaluation of Protein Expression Levels of SMC-Containing ORF with Administration of a TREM

This example describes administration of a TREM to alter expression levels of an SMC-containing ORF.

To create a system in which to study the effects of TREM administration on protein expression levels of an SMC-containing protein, in this example, from the PNPL3A gene coding for adiponutrin, a plasmid containing the PNPL3A rs738408 ORF sequence is transfected in the normal human hepatocyte cell line THLE-3, edited by CRISPR/Cas to contain a frameshift mutation in a coding exon of PNPLA3 to knock out endogenous PNPLA3 (THLE-3_PNPLA3KO cells). As a control, an aliquot of THLE-3_PNPLA3KO cells are transfected with a plasmid containing the wildtype PNPL3A ORF sequence.

Synthesis and Preparation of TREM

An arginine TREM is synthesized as described in Example 1 and quality control methods as described in Examples 7-9 are performed. To ensure proper folding, the TREM is heated at 85° C. for 2 minutes and then snap cooled at 4° C. for 5 minutes.

Evaluation of Protein Level of SMC-Containing ORF

A TREM is delivered to the THLE-3_PNPLA3KO cells containing the rs738408 ORF sequence as well as to the THLE-3_PNPLA3KO cells containing the wildtype PNPL3A ORF sequence. In this example, the TREM contains a proline isoacceptor containing an AGG anticodon, that base pairs to the CCT codon, i.e. with the sequence GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUU CAAAUCCCGGACGAGCCC (SEQ ID NO: 1292). A time course is performed ranging from 30 minutes to 6 hours with hour-long interval time points. At each time point, cells are trypsinized, washed and lysed. Cell lysates are analyzed by Western blotting and blots are probed with antibodies against the adiponutrin protein. A total protein loading control, such as GAPDH, actin or tubulin, is also probed as a loading control.

The methods described in this example can be adopted for use to evaluate the expression levels of the adiponutrin protein in rs738408 ORF containing cells.

Example 14: Modulation of Protein Translation Rate of SMC-Containing ORF with TREM Administration

This example describes administration of a TREM to alter the rate of protein translation of an SMC-containing ORF.

To monitor the effects of TREM addition on translation elongation rates, an in vitro translation system, in this example the RRL system from Promega, is used in which the fluorescence change over time of a reporter gene, in this example GFP, is a surrogate for translation rates.

Synthesis and Preparation of TREM

An arginine TREM is synthesized as described in Example 1 and quality control methods as described in Examples 7-9 are performed. To ensure proper folding, the TREM is heated at 85° C. for 2 minutes and then snap cooled at 4° C. for 5 minutes.

Evaluation of Protein Translation Rate of SMC-Containing ORF

First, a rabbit reticulocyte lysate that is depleted of the endogenous tRNA using an antisense oligonucleotide targeting the sequence between the anticodon and variable loop is generated (see, e.g., Cui et al. 2018. Nucleic Acids Res. 46(12):6387-6400). In this example, a TREM comprising an alanine isoacceptor containing an UGC anticodon, that base pairs to the GCA codon, i.e. with the sequence GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUUGCAUGUAUGAGGUCCCGGGUU CGAUCCCCGGCAUCUCCA (SEQ ID NO: 1293) is added to the in vitro translation assay lysate in addition to 0.1-0.5 ug/uL of mRNA coding for the wildtype TERT ORF fused to the GFP ORF by a linker or an mRNA coding for the rs2736098 TERT ORF fused to the GFP ORF by a linker. The progress of GFP mRNA translation is monitored by fluorescence increase on a microplate reader at 37° C. using λ_(ex)485/λ_(em)528 with data points collected every 30 seconds over a period of 1 hour. The amount of fluorescence change over time is plotted to determine the rate of translation elongation of the wildtype ORF compared to the rs2736098 ORF with and without TREM addition. The methods described in this example can be adopted for use to evaluate the translation rate of the rs2736098 ORF and the wildtype ORF in the presence or absence of TREM. 

What is claimed is:
 1. A method of delivering a tRNA-based effector molecule (TREM) to a cell or a subject, wherein the TREM comprises a non-naturally occurring modification at a nucleotide position corresponding to a selected nucleotide position of a reference sequence, wherein the reference sequence is SEQ ID NO: 622, and the selected nucleotide position is selected from nucleotide positions 2, 3, and 73 of SEQ ID NO:
 622. 2. The method of claim 1, wherein the TREM comprises an RNA sequence encoded by a DNA sequence at least 95% identical to SEQ ID NO:
 43. 3. The method of claim 1, wherein the TREM comprises an RNA sequence encoded by a DNA sequence at least 95% identical to SEQ ID NO:
 200. 4. The method of claim 1, wherein the TREM comprises an RNA sequence encoded by a DNA sequence at least 95% identical to SEQ ID NO:
 90. 5. The method of claim 1, wherein the selected nucleotide position of the reference sequence is nucleotide position
 2. 6. The method of claim 1, wherein the selected nucleotide position of the reference sequence is nucleotide position
 3. 7. The method of claim 1, wherein the selected nucleotide position of the reference sequence is nucleotide position
 73. 8. The method of claim 1, wherein the non-naturally occurring modification comprises an internucleotide modification or a 2′-modification on a nucleotide sugar moiety.
 9. The method of claim 8, wherein the non-naturally occurring modification is selected from 2′-OMe, 2′-F, 2′-deoxy, 2′-MOE, and a phosphorothioate internucleotide modification.
 10. The method of claim 1, wherein the TREM further comprises a non-naturally occurring modification at a nucleotide position corresponding to nucleotide positions 16 or 52 of SEQ ID NO:
 622. 11. The method of claim 1, wherein TREM further comprises a non-naturally occurring modification at a selected nucleotide position within the ACH domain.
 12. The method of claim 1, wherein TREM does not comprise a non-naturally occurring modification a selected nucleotide position within the ACH domain.
 13. The method of claim 1, wherein the TREM is formulated as a lipid nanoparticle.
 14. The method of claim 1, wherein the TREM is delivered to a subject having a premature termination codon (PTC) disorder.
 15. The method of claim 1, wherein the correspondence between a selected nucleotide position in the TREM and a nucleotide position in the reference sequence SEQ ID NO: 622 is determined as follows: (a) aligning the sequence of SEQ ID NO: 622 and the sequence of the TREM based on a global pairwise alignment calculated with the Needleman-Wunsch algorithm to produce a plurality of alignments; (b) selecting the alignment from (a) with the highest overall alignment score within the plurality; (c) using the alignment selected in (b) to determine the percent similarity between the TREM sequence and the reference sequence SEQ ID NO: 622; and, wherein, if the nucleotide position in the sequence of SEQ ID NO: 622 is paired with a selected nucleotide position in the TREM sequence, the positions are corresponding.
 16. The method of claim 1, wherein the correspondence between a selected nucleotide position in the TREM and a nucleotide position in the reference sequence SEQ ID NO: 622 is determined as follows: (a) aligning the sequence of the TREM with a plurality of isodecoder consensus sequences, wherein the alignment is performed as follows; (i) aligning the TREM sequence and an isodecoder consensus sequence from the plurality based on a global pairwise alignment calculated with the Needleman-Wunsch algorithm; (ii) selecting the alignment from (i) with the highest overall alignment score within the plurality; (iii) using the alignment selected in (ii) to determine the percent similarity between the TREM sequence and the consensus sequence within the plurality by counting the number of matched positions in the alignment; (iv) repeating steps (i)-(iii) for each of the remaining isodecoder consensus sequences in the plurality, wherein the alignment resulting in the greatest percent similarity is selected; wherein if this alignment has a percent similarity equal to or greater than 60%, it is considered a valid alignment and used to relate positions in the TREM sequence to those in the consensus sequence, (b) comparing whether the value for a nucleotide position number determined for the TREM sequence in step (iv) is the same as the value for the position number determined for the reference sequence SEQ ID NO: 622, the positions are defined as corresponding.
 17. A method of delivering a tRNA-based effector molecule (TREM) to a cell or a subject, wherein the TREM has a sequence with 95% sequence identity to SEQ ID NO: 622 and comprises a non-naturally occurring modification at a nucleotide position selected from nucleotide positions 2, 3, 16, 52, and 73 of SEQ ID NO:
 622. 18. The method of claim 17, wherein the non-naturally occurring modification is selected from 2′-OMe, 2′-F, 2′-deoxy, 2′-MOE, and a phosphorothioate internucleotide modification. 